BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474673 Length=410 Score E Sequences producing significant alignments: (Bits) Value AT1G56060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 551 2e-156 > AT1G56060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 180 Blast hits to 180 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20966528-20967144 REVERSE LENGTH=436 Length=436 Score = 551 bits (298), Expect = 2e-156 Identities = 379/417 (91%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 1 CAGACATATCAATGGCTCAGTATCATCAACAACACGAAATGAAGCAGACAATGACAGAGA 60 |||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 1 CAGACATAGCAATGGCTCAGTATCATCAACAGCATGAAATGAAGCAGACAATGGCAGAGA 60 Query 61 CACCGTATGTGACAGCTCCGCCACCAATGGGTTACCCGGTGATGAAGAAGGAATCTCCCC 120 ||| |||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||| Sbjct 61 CACAGTATGTGACAGCGCCGCCACCGATGGGTTACCCGGTGATGATGAAAGACTCTCCCC 120 Query 121 AAACTGTGCAGCCTCCTAATCAGACG-CAGAGCAAAGGCACTGGTGGCTTTTTACGTGGA 179 ||||||||||||||||| || || | ||||||||||||| |||||| |||||||||||| Sbjct 121 AAACTGTGCAGCCTCCTCATGAG-GGTCAGAGCAAAGGCAGTGGTGGATTTTTACGTGGA 179 Query 180 TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCTTCCCA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCCTCCCA 239 Query 240 C-A-AC-A--CACACAGCTTCTACGGAtctttttgtcttgattcttgattttttctctgt 294 | | || | |||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 240 CTACACTATACACACAGCTTCTACTGATCTTTTTGTCTTGATTCTTGATGTTTTCTTTGT 299 Query 295 acctttttattaagttttggtttgAGTGTT-GCTATTTCTGATTTTGTTACATTTGGTTA 353 || ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 300 ACATTTTTATAAAGTTTTGATT-GAGTGTTTGCTATTTCTGATTTTGTTACATTTGGTTG 358 Query 354 CTGTACTGTAATTACATCCTTATTATTTTGTACATTAGTTATTTCCCTGTTCTGAGT 410 ||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||| Sbjct 359 TTGTTTTGTAATTACATTCTTATTCTTTTGTATATTAGTTATTTCCCTGTTCTGAGT 415 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19403351114 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5