BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474673

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56060.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   551    2e-156


> AT1G56060.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G32210.1); 
Has 180 Blast hits to 180 proteins in 22 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20966528-20967144 
REVERSE LENGTH=436
Length=436

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 379/417 (91%), Gaps = 9/417 (2%)
 Strand=Plus/Plus

Query  1    CAGACATATCAATGGCTCAGTATCATCAACAACACGAAATGAAGCAGACAATGACAGAGA  60
            |||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct  1    CAGACATAGCAATGGCTCAGTATCATCAACAGCATGAAATGAAGCAGACAATGGCAGAGA  60

Query  61   CACCGTATGTGACAGCTCCGCCACCAATGGGTTACCCGGTGATGAAGAAGGAATCTCCCC  120
            ||| |||||||||||| |||||||| ||||||||||||||||||| ||| || |||||||
Sbjct  61   CACAGTATGTGACAGCGCCGCCACCGATGGGTTACCCGGTGATGATGAAAGACTCTCCCC  120

Query  121  AAACTGTGCAGCCTCCTAATCAGACG-CAGAGCAAAGGCACTGGTGGCTTTTTACGTGGA  179
            ||||||||||||||||| || ||  | ||||||||||||| |||||| ||||||||||||
Sbjct  121  AAACTGTGCAGCCTCCTCATGAG-GGTCAGAGCAAAGGCAGTGGTGGATTTTTACGTGGA  179

Query  180  TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCTTCCCA  239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  180  TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCCTCCCA  239

Query  240  C-A-AC-A--CACACAGCTTCTACGGAtctttttgtcttgattcttgattttttctctgt  294
            | | || |  |||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct  240  CTACACTATACACACAGCTTCTACTGATCTTTTTGTCTTGATTCTTGATGTTTTCTTTGT  299

Query  295  acctttttattaagttttggtttgAGTGTT-GCTATTTCTGATTTTGTTACATTTGGTTA  353
            || ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| 
Sbjct  300  ACATTTTTATAAAGTTTTGATT-GAGTGTTTGCTATTTCTGATTTTGTTACATTTGGTTG  358

Query  354  CTGTACTGTAATTACATCCTTATTATTTTGTACATTAGTTATTTCCCTGTTCTGAGT  410
             |||  ||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct  359  TTGTTTTGTAATTACATTCTTATTCTTTTGTATATTAGTTATTTCCCTGTTCTGAGT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19403351114


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5