BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474675
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1639 0.0
> AT1G56080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G16520.1);
Has 196 Blast hits to 193 proteins in 50 species: Archae
- 2; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses
- 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr1:20974161-20976291
REVERSE LENGTH=1305
Length=1305
Score = 1639 bits (887), Expect = 0.0
Identities = 1052/1127 (93%), Gaps = 30/1127 (3%)
Strand=Plus/Plus
Query 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTGGGCAGCCGAAGATC 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTAGGCAGCCGAAGATC 60
Query 61 CCGAGAGACCTTTTTCGAGCAATGGAGTCTCAAAGCAGCGGTGACTTCAGCCTCTCCGAC 120
||||| | || ||| || || |||||||||| |||||||||||| ||||||||||
Sbjct 61 CCGAG-GGCC-CTTT---GCGAT---GTCTCAAAGCGGCGGTGACTTCAACCTCTCCGAC 112
Query 121 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGATCTCGCCAGGAAGATC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 113 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGACCTCGCCAGGAAGATC 172
Query 181 ACTTCCATGGCCATAGCTTCGAGGGTTTCGAATCTGGAATCACAAGTCTCCGGCTTGAGA 240
||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 173 ACTTCCATGGCTATCGCTTCAAGGGTTTCGAATCTGGAATCTCAAGTCTCCGGCTTGAGA 232
Query 241 CAGAAGCTTCTTGAGAAAGATCGGCTTGTCCGTGAACTTGAAGACAGAGTCTCTTCCTTT 300
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 233 CAGAAGCTTCTTGAGAAGGATCGGCTTGTTCATGAACTTGAAGACAGAGTCTCTTCCTTT 292
Query 301 GAAAGACTTTACCATGAGGCTGACTCTACTTTGAAGAATGTTGTTGATGAAAATATGAAA 360
||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct 293 GAAAGACTTTACCATGAAGCTGACTCGAGTTTGAAGAATGTTGTCGATGAAAATATGAAA 352
Query 361 CTAACTCAAGAACGAGATTCACTGGCTATCACTGCGAAGAAACTCGGTCGTGATTTTGCA 420
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 353 CTGACTCAAGAACGAGATTCACTGGCAATCACTGCGAAGAAACTCGGTCGTGATTATGCA 412
Query 421 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGACAATCCATCTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 413 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGATAATCCATCTCAA 472
Query 481 ACTGAGACAGCTGATGTCAGAGTGGTTCCTCGAGGCAAAGATGAGAATTCGAATGGCTTA 540
|||||||| |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 473 ACTGAGACTGCTGATGTCAGAATGGTTCCTCGAGGCAAAGATGAGAATTC-AA------A 525
Query 541 TCGGCGCACGGTTCCTACTCAAACAACCAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 600
| | | | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 T--G-G-A----TCCTACTCAAACAATGAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 577
Query 601 ATGACTCTGCAATTCTCTCCCG-GTTTTACACCAAGCGGAACACCAAAGATCTTATCTAC 659
||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 578 ATGACTCCGCAGTTCTCTCCCGCG-TTTACACCAAGCGGAACACCAAAGATCTTATCTAC 636
Query 660 TGGTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TGCTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 696
Query 720 ATCCCCAACAACTTCACATTATGATATACGTATGTGGTCTTCATCAAGCCAGCAGTCTTC 779
||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 697 ATCTCCAACATCTTCACATTATGATATACGTATGTGGTCTTCAACTAGCCAGCAATCTTC 756
Query 780 AGTAGCAAACTCTCCTCCTCGGTCGCATTCTACTTCAGCTCGCCATCCGCGGATTGATGG 839
|||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||
Sbjct 757 AGTAGCAAACTCTCCTCCACGCTCGCATTCTGTTTCAGCTCGGCATCCGCGGATTGATGG 816
Query 840 GAAAGAATTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GAAAGAGTTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 876
Query 900 GGCTAACATCAAGGAACTAAACGCTCGGAAGCAGAGCCGCGAGGAAACATTACAGAAAGC 959
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 877 GGCTAACATCAAGGAACTTAACGCCCGGAAGCAGGGCCGCGAGGAAACATTACAGAAAGC 936
Query 960 AGAGGAAATATTTGGAAAGGAAAACAATGATCTATACATATCGTTTAAGGGACTTCTCAC 1019
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 937 AGAGGAAATATTTGGAAAGGAAAACAATGATCTTTACATATCCTTTAAGGGACTTCTCAC 996
Query 1020 AAGTGGGCGTTGAAACAAAAAC--ACCAACTTCTAAGCTTTCTTTTCATGACCAATAATT 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 997 AAGTGGGCGTTGAAACAAAAACTCACCAACTTCTAAGCTTTCTTTTCATGACCAAT--T- 1053
Query 1078 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1124
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5