BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474677
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56090.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1417 0.0
> AT1G56090.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:20977695-20979357 REVERSE LENGTH=1285
Length=1285
Score = 1417 bits (767), Expect = 0.0
Identities = 1059/1189 (89%), Gaps = 64/1189 (5%)
Strand=Plus/Plus
Query 1 TTCACTCGCCATTATTGTTCctttcttcttcttcttcttcttctctggatctct-c-tcc 58
||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||
Sbjct 38 TTCACTCGCCATTATTGTTCC-CTCTTCTTCTTCTTCTTATTCTCTGGATCTCTCCTTCT 96
Query 59 ccctctcttctctctaca---atttctcttTATCAGTA-TAGTTAAATCTACGGTTTCTT 114
||||||||||| |||||| ||||| ||||| ||| | || ||||||| ||||||||||
Sbjct 97 CCCTCTCTTCTTTCTACAGTTATTTCGCTTTAGCAG-ATTACTTAAATCCACGGTTTCTT 155
Query 115 CTTCTCCGGGAGTATTTAT---G---GC----A-----TCAGGCAAGGAGGAGAAGGGGC 159
|||||||||||| |||||| | || | |||||||||| |||||| || |
Sbjct 156 CTTCTCCGGGAGCATTTATGGCGTCAGCGGTGACGGCGTCAGGCAAGGTGGAGAAAGGAC 215
Query 160 ATCAGCTATACAAAGACGGCAAGTATAAAGAGGCGCTTCTCTTCTTTACGGAGGCTCTTA 219
|||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 216 ATCAGCTATATAGAGACGGCAAGTATAAGGAGGCGCTTCTCTTCTATACGGAGGCTCTTA 275
Query 220 -TGGCTGCTAAAGCCAAGCCTCAGAAGATCGCTCTTCACAGCAACCGCGCCGCTTGTTTT 278
| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 276 CT-GCTGCTAAAGCTAAACCACAGAAGATCGCTCTTCACAGCAACCGCGCCGCTTGTTAC 334
Query 279 TTGAAATTGAACGATTTCAATAAGGCAGCAGAAGAATGCACTTGTGTTCTTGAGCTTGAT 338
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TTGAAATTGCACGATTTCATTAAGGCAGCAGAAGAATGCACTTGTGTTCTTGAGCTTGAT 394
Query 339 CAGAAACATAGTGGTGCGTTGAGT-CTGAGGGCTCAGACATTAGTCACTCTTAAAGAATA 397
||||||||||| || ||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 395 CAGAAACATAGCGGAGCGTTGA-TGCTGAGGGCTCAGACTTTAGTCACTCTTAAAGAATA 453
Query 398 CCAATCTGCTCTTTTTGATGTCACCAGACTTATGGAGTTGAACCCTGATTCCAAGGTTTA 457
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 454 CCAATCTGCTCTTTTTGATGTCACCAGGCTTATGGAGTTGAACCCTGATTCTGAGGTTTA 513
Query 458 TCAGAACCTTGAAGCTCGCTTGAGGACGCAGTTGTCCCTTGCTCCAATT-C-----CTg- 510
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 514 TCAGAACCTCGAAGCTCGCTTGAGGACGCAGTTGTCCCTTGCTCCAATTCCTGAGTCTGA 573
Query 511 a--ag-a-t-gaagaagagagtgacgcagaagaacaagacacacaagat-aagaaaagta 564
| || | | |||||||||||||| | | ||||||||| | ||||| ||| ||||||
Sbjct 574 AGCAGAATTGGAAGAAGAGAGTGA--C-GTTGAACAAGACGCTGAAGATAAAG-AAAGTA 629
Query 565 gacaagTTGAGTTTGGTGTTC-ACGAGAGAAGAGATCAGAGGTTTGAGTCGGTAGTTTCC 623
|| |||||||| |||||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 630 GAGAAGTTGAGCTTGGTG-TCAATGAGAGAAGAGATAAGAGGTTTGAGTCGGTAGTTTCC 688
Query 624 ATTAGAAGAGATATAGAGACCCA-AGGAGAAGATGCAGATATAAACAAGGGGGAAGTTGT 682
||||||||||| |||||| | | |||||||||||| | ||||||||||||||||||||
Sbjct 689 CTTAGAAGAGATCTAGAGA-CTACAGGAGAAGATGC-G--ATAAACAAGGGGGAAGTTGT 744
Query 683 TGCACCTAAAACACCAGAGGTTAGAGAACAGAACAGCAAGGAAGTGCCGTTGTTGTCTGG 742
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 745 TGCACCTAAAACACCAGAGGTTAGAGAACAGAACAGCAAGGAAGTGCC---AATGTCTGG 801
Query 743 AAAGCAATCTAATGCATGGCAAGCCATACCTAAGCCTAAGGGTCATTCAACACTCGATTA 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AAAGCAATCTAATGCATGGCAAGCCATACCTAAGCCTAAGGGTCATTCAACACTCGATTA 861
Query 803 CGCCCGTTGGGATACAGTTGAAGATGATTCCAGCGAAGAAGAAGACGATGAAGACAGCGA 862
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 862 CGCCCGTTGGAATACAGTTGAAGATGATTCCAGTGAAGAAGAAGACGATGAAGACAGCGA 921
Query 863 TGACAGTGATGAATCTCCACCCCAGTACAGATTCCGTGTCAAGACAGTCGGGGTGCGTCC 922
|||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 922 TGACAGTGATGAGTCGCCACCTCAGTACAGATTCCGTGTTAAGACAGTCGGGGTGCGTCC 981
Query 923 TGTGAAGTGAAAAACTGTAGATAGGAACATGGGATGGTTTACTT-CATCCTGATATATTG 981
|||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 982 TGTGAAGTGAAACATTGTAGATAGGAACATGGGATGGTTT-CTTTCATCCTGATATATTG 1040
Query 982 CATAGTGTTGCACAGAAGAGCTGTGAAAAA-GCATTAGAGAGAAGGGGCTAGTGTAGTGT 1040
|||| | | |||||| |||||||||||||| ||||||||| ||||||| ||||| | |
Sbjct 1041 CATA-T-T-GCACAGGAGAGCTGTGAAAAAAGCATTAGAGTGAAGGGGATAGTG-A-T-- 1093
Query 1041 ACCAAAGCAGACTCGTCATGTTTTAAATTGCCTCATCTGCAATTGGCTTCAGCAGTCACC 1100
||||||||||||| |||||||||| ||||||||| |||| |||||| |||||| ||||||
Sbjct 1094 ACCAAAGCAGACTAGTCATGTTTTGAATTGCCTCTTCTGTAATTGGTTTCAGCGGTCACC 1153
Query 1101 ATGTATCAGTGTGATGTGTCTATTTATACATCTTCCAAAAGAAAGATAC 1149
|||||||| |||| ||||||| ||||||||||||| |||||||| ||||
Sbjct 1154 ATGTATCAATGTGCTGTGTCTTTTTATACATCTTCGAAAAGAAACATAC 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5