BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474678
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56110.1 | Symbols: NOP56 | homolog of nucleolar protein NOP... 2867 0.0
AT3G12860.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1288 0.0
> AT1G56110.1 | Symbols: NOP56 | homolog of nucleolar protein NOP56
| chr1:20984389-20986951 REVERSE LENGTH=1782
Length=1782
Score = 2867 bits (1552), Expect = 0.0
Identities = 1689/1755 (96%), Gaps = 10/1755 (1%)
Strand=Plus/Plus
Query 1 TTAGGGTTTTAGTTTCTTCTCCTCCAAAAATGGCGATGTATGTTCTCCACGAATCTTCTT 60
|||||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||
Sbjct 30 TTAGGGTTTTAGTTTCTTCTCCTCAAAAAATGGCGATGTATGTTATCTACGAGTCTTCTT 89
Query 61 CCGGCTATGCTCTCTTAGAGGTTCACGGACTAGATGAGATCGGACAGAACACTGAGGCGG 120
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 CCGGCTATGGTCTCTTCGAGGTTCACGGACTAGATGAGATCGGACAGAACACTGAGGCGG 149
Query 121 TTCGGACCTCCGTCTCCGACCTCAGTCGCTTTGGCCGTGTTGTTCAGCTCACAGCGTTTC 180
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TTCGGACTTCTGTCTCCGACCTCAGTCGCTTTGGCCGTGTTGTTCAGCTCACAGCGTTTC 209
Query 181 ATCCCTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGGTGTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 ATCCCTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGGTGTTA 269
Query 241 TGACTGATGAGCTTAGAAGTTTTCTGGAGTTAAATCTTCCTAAAGTCAAGGAGGGAAAGA 300
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 270 TGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGA 329
Query 301 AGCCCAAGTTCAGCTTAGGATTGGCTGAGCCTAAACTCGGTTCACATATATTTGAAGCCA 360
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 330 AACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAAACTCGGTTCACATATATTTGAAGCTA 389
Query 361 CTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTACGCCAGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 390 CTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGC 449
Query 421 ATTTTGATAGGTTTATCAAGGACCTAAAGCCTGGTGATCTTGAAAAATCTCAGCTTGGAT 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 450 ATTTTGATAGGTTTATCAAGGACTTAAAGCCTGGTGATCTTGAAAAATCTCAGCTTGGAT 509
Query 481 TAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGG 569
Query 541 TTATTCAAGCTATTTTCCTTCTTGACACGCTTGACAAGGATATCAATTCCTTTGCCATGA 600
||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 570 TTATTCAAGCTATCTTCATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGA 629
Query 601 GAGTCAGGGAATGGTATTCGTGGCACTTCCCTGAACTAGTGAAGATAGTCAATGACAACT 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 630 GAGTCAGGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACT 689
Query 661 ATCTTTACGCCCGCGTTTCAAAGATGATTGATGACAAGTCAAAGTTGACTGAAGACCACA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 690 ATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTGACTGAAGATCACA 749
Query 721 TCCCAATGCTTACTGAAGTCTTAGGGGATGAAGATAAGGCAAAGGAGGTTATCGAAGCTG 780
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 750 TCCCCATGCTTACTGAAGTCTTAGGGGATGAAGATAAGGCAAAGGAGGTCATCGAAGCTG 809
Query 781 GAAAAGCATCCATGGGC-CAGGATTTATCACCGCTTGACTTGATCAACGTTCAGACATTT 839
||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 810 GAAAAGCATCCATGGGCTC-GGATTTATCACCGCTTGACTTAATCAACGTACAGACCTTT 868
Query 840 GCCCAGAGAGTTATGGACCTTGCTGACTACAGGAAGAAGCTCTATGATTATCTTGTCACT 899
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GCTCAGAAAGTTATGGACCTTGCTGACTACAGGAAGAAGCTCTATGATTATCTTGTCACT 928
Query 900 AAGATGAGCGACATTGCCCCTAATTTGGCAGCTTTGATTGGAGAGATGGTCGGTGCCCGT 959
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 929 AAGATGAGCGACATTGCCCCTAATTTGGCTGCTTTGATTGGAGAAATGGTCGGTGCCCGT 988
Query 960 TTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCTACCCTCCAG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 989 TTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCCACCCTCCAG 1048
Query 1020 ATCCTTGGAGCCGAGAAGGCACTTTTCAGGGCGCTTAAAACTCGTGGAAACACTCCCAAG 1079
|| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1049 ATTCTTGGAGCCGAGAAGGCTCTTTTCAGGGCACTTAAAACACGTGGAAACACTCCCAAG 1108
Query 1080 TATGGGTTGATTTTCCATTCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGT 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TATGGATTGATTTTCCATTCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGT 1168
Query 1140 ATTGCTCGCTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGAT 1199
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGAT 1228
Query 1200 GGTGCAACTACTGCCTTTGGTGAGAAGCTTCGCGAACAAGTTGAAGAAAGGCTAGAATTT 1259
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1229 GGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAAGGCTAGAATTT 1288
Query 1260 TATGACAAAGGTGTTGCCCCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TATGACAAAGGTGTTGCCCCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAAT 1348
Query 1320 CTGCAAAAGCAAGACGAGGAAGGGAAGGAGCCAGTGGAGGCCTCGGTgaagaaaagcaag 1379
|| ||| |||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1349 CT--AAA-GCAAGAAGAGGAAGGGAAGGAGCCAGTTGATGCCTCGGTGAAGAAAAGCAAG 1405
Query 1380 aagaagaaggcaaagggtgaaga-g--gaagaGGTGGTGGCAATGGAGGAGGACAAGTca 1436
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1406 AAGAAGAAGGCAAAGGGTGAAGAAGAAGAAGAGGTGGTGGCAATGGAGGAGGACAAGTCA 1465
Query 1437 gagaaaaagaagaagaaagagaagaggaagatggagacagcagaggagaatgagaaatca 1496
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1466 GAGAAAAAGAAGAAGAAAGAGAAGAGGAAGATGGAGACTGCAGAGGAGAACGAGAAATCA 1525
Query 1497 gagaagaagaagacaaagaagagtaaagctggaggagaagaggagaCTGATGATGGTCAC 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 GAGAAGAAGAAGACAAAGAAGAGTAAAGCTGGAGGAGAAGAGGAGACTGATGATGGTCAC 1585
Query 1557 AGCACCaagaagaagaagaagaagTCTAAGAGCTCTGAATAGAGAGGGATGCAACAT-AA 1615
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1586 AGCACCAAGAAGAAGAAGAAGAAGTCTAAGAGCGCTGAATAGAAAGGGATGCAACATTAA 1645
Query 1616 CATACCCTGTATTGTAttttttttt-GAGCTAAATTAATGTCGTCTGTTTTTCGTAGTGA 1674
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1646 CAAACCCTGTATTGTATTTTTTTTTTGAGCTAAATTAATGTCGTCTGTTTTTCGTAGTGA 1705
Query 1675 ACTTTGGATAATTTTTGTTTTGCCCTGGAAACGATGCAAGATTTGGCAATATCTTAAGTT 1734
|| | ||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1706 ACATCGGAGAATTTTTGTTTTGGTCTGGAAACGATTCAAGGTTTGGCAATATCTTAAGTT 1765
Query 1735 TGTTTAGGTTTTCAC 1749
|||||||||||||||
Sbjct 1766 TGTTTAGGTTTTCAC 1780
> AT3G12860.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr3:4091570-4093921 FORWARD LENGTH=1608
Length=1608
Score = 1288 bits (697), Expect = 0.0
Identities = 1160/1379 (84%), Gaps = 49/1379 (4%)
Strand=Plus/Plus
Query 93 GATGAGATCGGACAGAACACTGAGGCGGTTCGGACCTCCGTCTCCGACCTCAGTCGCTTT 152
|||||||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||| ||
Sbjct 172 GATGAGATTGGACAGAACACGGAGGCGGTTCGGAGCTCCGTCTCGGACCTTAGTCGGTTC 231
Query 153 GGCCGTGTTGTTCAGCTCACAGCGTTTCATCCC-TTTGAGTCTGCTCTCGATGCTCTCAA 211
|| || || || |||||||| || ||||| ||| || ||||||| ||||||||||| ||
Sbjct 232 GGGCGGGTCGTCCAGCTCACTGCTTTTCA-CCCGTTCCAGTCTGCACTCGATGCTCTTAA 290
Query 212 CCAAGTCAACGCCGTCTCTGAAGGTGT-TATGA-CTGATGAGCTTAGAAGTTTTCTGGAG 269
|||| ||||||||||||||||||| | |||| | |||||||| |||||||||||||||
Sbjct 291 CCAAATCAACGCCGTCTCTGAAGG-ATACATGAGC-GATGAGCTGAGAAGTTTTCTGGAG 348
Query 270 TTAAATCTTCCTAAAGTCAAGGAGGGAAAGAAGCCCAAGTTCAGCTTAGGATTGGCTGAG 329
| ||||| || ||||| ||||| || |||||||||||||| || || ||| || |||||
Sbjct 349 CTGAATCTCCCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTTTAGTTTGGGAGTGTCTGAG 408
Query 330 CCTAAACTCGGTTC--ACATATATTTGAAGCCACTAAAATCCCATGCCAGAGCAATGAGT 387
|||||| ||||||| ||| | |||||||| || ||||| || ||||||||||||||||
Sbjct 409 CCTAAAATCGGTTCTTGCAT-T-TTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGT 466
Query 388 TTGTTCTTGAGCTTCTCAGAGGTGTACGCCAGCATTTTGATAGGTTTATCAAGGACCTAA 447
|||| | |||||| || |||||||| || |||||||| |||||||| ||||| ||| | |
Sbjct 467 TTGTCCATGAGCTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGA 526
Query 448 AGCCTGGTGATCTT-GAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGAGCCAAG 506
||||||||||| || |||||| |||| |||||| ||||||| |||||||||||||| |||
Sbjct 527 AGCCTGGTGAT-TTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAG 585
Query 507 GTGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAGCTATTTTCCTTCTTGAC 566
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 586 GTGAAGTTCAATGTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGAC 645
Query 567 ACGCTTGACAAGGATATCAATTCCTTTGCCATGAGAGTCAGGGAATGGTATTCGTGGCAC 626
|| ||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 646 ACACTTGATAAGGATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCATGGCAC 705
Query 627 TTCCCTGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGCGTTTCAAAGATG 686
|||||||| || || |||||||| ||||||||||| || |||||| |||||||||||
Sbjct 706 TTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATT 765
Query 687 ATTGAT-GACAAGTCAAAGTTGACTGAAGACCACATCCCAATGCTTACTGAAGTCTTAGG 745
|| | | ||||||||||||||| ||||||| |||||||| ||||||||||||| | | ||
Sbjct 766 ATCG-TCGACAAGTCAAAGTTGTCTGAAGAGCACATCCCTATGCTTACTGAAGCCCT-GG 823
Query 746 G-GATGAAGATAAGGCAA-AGGAGGTTATCGAAGCTGGAAAAGCATCCATGGGCCAGGAT 803
| |||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 824 GTGATGAAGATAAGGCAAGAG-AGGTTATTGAAGCTGGAAAAGCATCTATGGGCCAGGAT 882
Query 804 TTATCACCGCTTGA-CTTGATCAACGTTCAGACATTTGCCCAGAGAGTTATGGACCTTGC 862
||||||||| |||| || |||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 883 TTATCACCGGTTGATCT-GATCAATGTCCAGACCTTTGCTCAGAGAGTTATGGACCTTGC 941
Query 863 TGACTACAGGAAGAAGCTCTATGATTATCTTGTCACTAAGATGAGCGACATTGCCCCTAA 922
|| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||
Sbjct 942 AGATTACAGGAAGAAGCTCTATGATTATCTTGTTACTAAAATGAGTGACATTGCTCCAAA 1001
Query 923 TTTGGCAGCTTTGATTGGAGAGATGGTCGGTGCCCGTTTGATTTCACATGCTGGAAGTCT 982
|||||| || ||||| ||||||||||| || || | |||||||||||||| ||||||||
Sbjct 1002 TTTGGCGGCCTTGATCGGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCT 1061
Query 983 GACTAACCTTGCTAAATGCCCATCTTCTACCCTCCAGATCCTTGGAGCCGAGAAGGCACT 1042
||| || ||||| || ||||||||||| ||||||||||| || || || |||||||||||
Sbjct 1062 GACAAATCTTGCCAAGTGCCCATCTTCAACCCTCCAGATTCTCGGTGCTGAGAAGGCACT 1121
Query 1043 TTTCAGGGCGCTTAAAACTCGTGGAAACACTCCCAAGTATGGGT-TGATTTTCCATTCTT 1101
||||||||| || ||||| ||||||||||| ||||| ||||| | | || |||||||| |
Sbjct 1122 TTTCAGGGCACTGAAAACACGTGGAAACACACCCAAATATGG-TCTAATATTCCATTCAT 1180
Query 1102 CCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATTGCTCGCTATC-TTGCAAAC 1160
| ||||| || || ||||||||||| |||||||||||||||||||| | || ||||||||
Sbjct 1181 CATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTT-TCCTTGCAAAC 1239
Query 1161 AAGTGCTCTATAGCATCCCGGATTGATTGTTT-TGCTGATGGT-GCAACTACTGCCTTT- 1217
||||| || || || ||||||||||||||||| | | ||| ||| |||| || |||
Sbjct 1240 AAGTGTTCCATTGCTTCCCGGATTGATTGTTTCT-CAGATAACAGCA-CTACAGC-TTTC 1296
Query 1218 GGTGAGAAGCTTCGCGAACAAGTTGAAGAAAGGCTAGAATTTTATGACAAAGGTGTTGCC 1277
|||||||| || | |||||||| || ||||| || || |||||||||||||||||||||
Sbjct 1297 GGTGAGAAACTAAGGGAACAAGTAGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCC 1356
Query 1278 CCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAATCT-GCAAAAGCAAGACGA 1336
||||| ||||| || ||||||||||| || ||| | || ||||| | | ||| |||||||
Sbjct 1357 CCACGTAAGAATGTTGATGTAATGAAAGAAGTGTTGGAAAATCTTG-AGAAGAAAGACGA 1415
Query 1337 GGAAGGGAAGGAGCCAGTGGAGGCCTCGGTgaagaaaagcaagaagaagaagg-caaagg 1395
|| || || | | |||||| || |||| |||||||| | ||||| ||| | || |||
Sbjct 1416 GGGAGAAAAA-A-C-AGTGGATGCTTCGGAGAAGAAAA--A-GAAGA-GAAAGACAGAGG 1468
Query 1396 gtgaagaggaagaGGTGGTGGCAATGGAGGAGGACAAGTcagagaaaaagaagaagaaa 1454
|||| | | |||| | || || | ||||| | || ||| |||||||||| ||||||
Sbjct 1469 A-GAAG-G-AGGAGGAGAAGG-AA-G-AGGAG-A-AA-TCAAAGAAAAAGAAAAAGAAA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5