BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474684
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56160.1 | Symbols: ATMYB72, MYB72 | myb domain protein 72 |... 1297 0.0
AT1G56165.1 | Symbols: | other RNA | chr1:21022759-21024402 RE... 833 0.0
> AT1G56160.1 | Symbols: ATMYB72, MYB72 | myb domain protein 72
| chr1:21022384-21023587 FORWARD LENGTH=1034
Length=1034
Score = 1297 bits (702), Expect = 0.0
Identities = 848/915 (93%), Gaps = 24/915 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60
Query 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120
Query 121 TCTCTTCCCAAGCTTGCTGGGTTGATGAGATGTGGGAAGAGTTGCCGACTGAGATGGATA 180
|||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||
Sbjct 121 TCTCTTCCCAAGCTTGCTGGATTGTTGAGATGTGGGAAAAGTTGCCGACTAAGATGGATA 180
Query 181 AACTATCTGAGACCGGACGTGAAGCGAGGTAACTTTAGCAAAAAGGAGGAAGATGCCATC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 AACTATCTGAGACCGGACGTGAAGCGAGGCAACTTTAGCAAAAAGGAGGAAGATGCTATC 240
Query 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCCGGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCGGGA 300
Query 301 AGAACGGACAACGAGATCAAGAACGTGTGGAACACTCATCTCAAGAAACGATTAA-TC-A 358
||||| |||||||||||||| |||||||||||||| ||||||||||||||| | | || |
Sbjct 301 AGAACTGACAACGAGATCAAAAACGTGTGGAACACGCATCTCAAGAAACGACTCACTCCA 360
Query 359 -CTCCATCTTCTTCCTCAATCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 417
|| | |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTCTTCTTCTTCATCCCTCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 420
Query 418 AAGAACTGTGACGGGGCTCAAGAAGAAATGCATTCAGGGTTAAAAGAGAGCCAAGACTCA 477
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 421 AAGAACTGTGACGGGGCTCAAGAAGAAATACATTCAGGGTTAAATGAGAGCCAAAACTCA 480
Query 478 GCTACTTCGTCACATCCCCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 537
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTACTTCGTCACATCACCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 540
Query 538 AATGAACTCAACGAGATCCAATTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 597
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATGGACTCAACGAGATCCAGTTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 600
Query 598 GAGTTTCTTCAGGATAACGAAATGTTATTTCCGCTAGACTCTCTTCTTCATTACCACGAA 657
|||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||
Sbjct 601 GAGTTTCTTCAGGATAACGATATCTTATTTCCGCTAGACTCTCTTCTTCATAACCACCAA 660
Query 658 TCTCACATTTCAACCACATGCGGAGTGACTCAAGAGGTGGTAACCAAATCGCAATCATCT 717
|||||||||||||| || | | |||||| |||||| ||||||||||||||||| |
Sbjct 661 ACTCACATTTCAACC-CAAGAA-A-TGACTCGAGAGGT---AACCAAATCGCAATCATTT 714
Query 718 GATCATCCTCAACTAGGACGTATCCCATATGGATTTGAGGACACAAACGGAGAATCCAAC 777
||||||||||||| ||| |||||||| |||||||| |||||||||| ||||||| ||
Sbjct 715 GATCATCCTCAACC-GGA--TATCCCATGCGGATTTGAAGACACAAACGAAGAATCCGAC 771
Query 778 TTGTGGAGACAGGTGGTTGAATCAACCACACATACACCTAGTCTTAACAATGAGTACGAC 837
||| |||||||| |||||||||||||||||| | || | |||||||||||||
Sbjct 772 TTGAGGAGACAGCTGGTTGAATCAACCACAC---C---TA-----A-CAATGAGTACGAC 819
Query 838 GAGTGGTTCAACTTCATCGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GAGTGGTTCAACTTCATTGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 879
Query 898 GTATGTCCATGAATG 912
||||||| |||||||
Sbjct 880 GTATGTCTATGAATG 894
> AT1G56165.1 | Symbols: | other RNA | chr1:21022759-21024402
REVERSE LENGTH=1180
Length=1180
Score = 833 bits (451), Expect = 0.0
Identities = 585/646 (91%), Gaps = 24/646 (4%)
Strand=Plus/Minus
Query 270 GTGGTCAAAGATCGCGTCCTTCTTGCCCGGAAGAACGGACAACGAGATCAAGAACGTGTG 329
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1116 GTGGTCAAAGATCGCGTCCTTCTTGCCGGGAAGAACTGACAACGAGATCAAAAACGTGTG 1057
Query 330 GAACACTCATCTCAAGAAACGA-TTAAT-CA-CTCCATCTTCTTCCTCAATCTCTAGCAC 386
|||||| ||||||||||||||| | | | || || | |||||||| || ||||||||||
Sbjct 1056 GAACACGCATCTCAAGAAACGACTCACTCCATCTTCTTCTTCTTCATCCCTCTCTAGCAC 997
Query 387 TCATGACCAAAGCACAAAAGCAGATCATGACAAGAACTGTGACGGGGCTCAAGAAGAAAT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TCATGACCAAAGCACAAAAGCAGATCATGACAAGAACTGTGACGGGGCTCAAGAAGAAAT 937
Query 447 GCATTCAGGGTTAAAAGAGAGCCAAGACTCAGCTACTTCGTCACATCCCCAAGGCGAGTG 506
|||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 936 ACATTCAGGGTTAAATGAGAGCCAAAACTCAGCTACTTCGTCACATCACCAAGGCGAGTG 877
Query 507 TATGCACACAAAACCAGAGCTTCATGAGGTTAATGAACTCAACGAGATCCAATTCCTGCT 566
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 876 TATGCACACAAAACCAGAGCTTCATGAGGTTAATGGACTCAACGAGATCCAGTTCCTGCT 817
Query 567 CGACCATGATGACTTTGATGATATAACCTCTGAGTTTCTTCAGGATAACGAAATGTTATT 626
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 816 CGACCATGATGACTTTGATGATATAACCTCTGAGTTTCTTCAGGATAACGATATCTTATT 757
Query 627 TCCGCTAGACTCTCTTCTTCATTACCACGAATCTCACATTTCAACCACATGCGGAGTGAC 686
|||||||||||||||||||||| ||||| || |||||||||||||| || | | ||||
Sbjct 756 TCCGCTAGACTCTCTTCTTCATAACCACCAAACTCACATTTCAACC-CAAGAA-A-TGAC 700
Query 687 TCAAGAGGTGGTAACCAAATCGCAATCATCTGATCATCCTCAACTAGGACGTATCCCATA 746
|| |||||| ||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 699 TCGAGAGGT---AACCAAATCGCAATCATTTGATCATCCTCAACC-GGA--TATCCCATG 646
Query 747 TGGATTTGAGGACACAAACGGAGAATCCAACTTGTGGAGACAGGTGGTTGAATCAACCAC 806
|||||||| |||||||||| ||||||| ||||| |||||||| ||||||||||||||||
Sbjct 645 CGGATTTGAAGACACAAACGAAGAATCCGACTTGAGGAGACAGCTGGTTGAATCAACCAC 586
Query 807 ACATACACCTAGTCTTAACAATGAGTACGACGAGTGGTTCAACTTCATCGACAACCAAAC 866
|| | || | |||||||||||||||||||||||||||||| |||||||||||
Sbjct 585 AC---C---TA-----A-CAATGAGTACGACGAGTGGTTCAACTTCATTGACAACCAAAC 538
Query 867 TTACTTTGATGATTTTAATTTCGTCGGAGAAGTATGTCCATGAATG 912
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 TTACTTTGATGATTTTAATTTCGTCGGAGAAGTATGTCTATGAATG 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5