BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474684 Length=912 Score E Sequences producing significant alignments: (Bits) Value AT1G56160.1 | Symbols: ATMYB72, MYB72 | myb domain protein 72 |... 1297 0.0 AT1G56165.1 | Symbols: | other RNA | chr1:21022759-21024402 RE... 833 0.0 > AT1G56160.1 | Symbols: ATMYB72, MYB72 | myb domain protein 72 | chr1:21022384-21023587 FORWARD LENGTH=1034 Length=1034 Score = 1297 bits (702), Expect = 0.0 Identities = 848/915 (93%), Gaps = 24/915 (3%) Strand=Plus/Plus Query 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60 Query 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120 Query 121 TCTCTTCCCAAGCTTGCTGGGTTGATGAGATGTGGGAAGAGTTGCCGACTGAGATGGATA 180 |||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||| Sbjct 121 TCTCTTCCCAAGCTTGCTGGATTGTTGAGATGTGGGAAAAGTTGCCGACTAAGATGGATA 180 Query 181 AACTATCTGAGACCGGACGTGAAGCGAGGTAACTTTAGCAAAAAGGAGGAAGATGCCATC 240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 181 AACTATCTGAGACCGGACGTGAAGCGAGGCAACTTTAGCAAAAAGGAGGAAGATGCTATC 240 Query 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCCGGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCGGGA 300 Query 301 AGAACGGACAACGAGATCAAGAACGTGTGGAACACTCATCTCAAGAAACGATTAA-TC-A 358 ||||| |||||||||||||| |||||||||||||| ||||||||||||||| | | || | Sbjct 301 AGAACTGACAACGAGATCAAAAACGTGTGGAACACGCATCTCAAGAAACGACTCACTCCA 360 Query 359 -CTCCATCTTCTTCCTCAATCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 417 || | |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCTTCTTCTTCTTCATCCCTCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 420 Query 418 AAGAACTGTGACGGGGCTCAAGAAGAAATGCATTCAGGGTTAAAAGAGAGCCAAGACTCA 477 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| Sbjct 421 AAGAACTGTGACGGGGCTCAAGAAGAAATACATTCAGGGTTAAATGAGAGCCAAAACTCA 480 Query 478 GCTACTTCGTCACATCCCCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 537 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCTACTTCGTCACATCACCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 540 Query 538 AATGAACTCAACGAGATCCAATTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 597 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 AATGGACTCAACGAGATCCAGTTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 600 Query 598 GAGTTTCTTCAGGATAACGAAATGTTATTTCCGCTAGACTCTCTTCTTCATTACCACGAA 657 |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| || Sbjct 601 GAGTTTCTTCAGGATAACGATATCTTATTTCCGCTAGACTCTCTTCTTCATAACCACCAA 660 Query 658 TCTCACATTTCAACCACATGCGGAGTGACTCAAGAGGTGGTAACCAAATCGCAATCATCT 717 |||||||||||||| || | | |||||| |||||| ||||||||||||||||| | Sbjct 661 ACTCACATTTCAACC-CAAGAA-A-TGACTCGAGAGGT---AACCAAATCGCAATCATTT 714 Query 718 GATCATCCTCAACTAGGACGTATCCCATATGGATTTGAGGACACAAACGGAGAATCCAAC 777 ||||||||||||| ||| |||||||| |||||||| |||||||||| ||||||| || Sbjct 715 GATCATCCTCAACC-GGA--TATCCCATGCGGATTTGAAGACACAAACGAAGAATCCGAC 771 Query 778 TTGTGGAGACAGGTGGTTGAATCAACCACACATACACCTAGTCTTAACAATGAGTACGAC 837 ||| |||||||| |||||||||||||||||| | || | ||||||||||||| Sbjct 772 TTGAGGAGACAGCTGGTTGAATCAACCACAC---C---TA-----A-CAATGAGTACGAC 819 Query 838 GAGTGGTTCAACTTCATCGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 897 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 820 GAGTGGTTCAACTTCATTGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 879 Query 898 GTATGTCCATGAATG 912 ||||||| ||||||| Sbjct 880 GTATGTCTATGAATG 894 > AT1G56165.1 | Symbols: | other RNA | chr1:21022759-21024402 REVERSE LENGTH=1180 Length=1180 Score = 833 bits (451), Expect = 0.0 Identities = 585/646 (91%), Gaps = 24/646 (4%) Strand=Plus/Minus Query 270 GTGGTCAAAGATCGCGTCCTTCTTGCCCGGAAGAACGGACAACGAGATCAAGAACGTGTG 329 ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 1116 GTGGTCAAAGATCGCGTCCTTCTTGCCGGGAAGAACTGACAACGAGATCAAAAACGTGTG 1057 Query 330 GAACACTCATCTCAAGAAACGA-TTAAT-CA-CTCCATCTTCTTCCTCAATCTCTAGCAC 386 |||||| ||||||||||||||| | | | || || | |||||||| || |||||||||| Sbjct 1056 GAACACGCATCTCAAGAAACGACTCACTCCATCTTCTTCTTCTTCATCCCTCTCTAGCAC 997 Query 387 TCATGACCAAAGCACAAAAGCAGATCATGACAAGAACTGTGACGGGGCTCAAGAAGAAAT 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 TCATGACCAAAGCACAAAAGCAGATCATGACAAGAACTGTGACGGGGCTCAAGAAGAAAT 937 Query 447 GCATTCAGGGTTAAAAGAGAGCCAAGACTCAGCTACTTCGTCACATCCCCAAGGCGAGTG 506 |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 936 ACATTCAGGGTTAAATGAGAGCCAAAACTCAGCTACTTCGTCACATCACCAAGGCGAGTG 877 Query 507 TATGCACACAAAACCAGAGCTTCATGAGGTTAATGAACTCAACGAGATCCAATTCCTGCT 566 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 876 TATGCACACAAAACCAGAGCTTCATGAGGTTAATGGACTCAACGAGATCCAGTTCCTGCT 817 Query 567 CGACCATGATGACTTTGATGATATAACCTCTGAGTTTCTTCAGGATAACGAAATGTTATT 626 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 816 CGACCATGATGACTTTGATGATATAACCTCTGAGTTTCTTCAGGATAACGATATCTTATT 757 Query 627 TCCGCTAGACTCTCTTCTTCATTACCACGAATCTCACATTTCAACCACATGCGGAGTGAC 686 |||||||||||||||||||||| ||||| || |||||||||||||| || | | |||| Sbjct 756 TCCGCTAGACTCTCTTCTTCATAACCACCAAACTCACATTTCAACC-CAAGAA-A-TGAC 700 Query 687 TCAAGAGGTGGTAACCAAATCGCAATCATCTGATCATCCTCAACTAGGACGTATCCCATA 746 || |||||| ||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 699 TCGAGAGGT---AACCAAATCGCAATCATTTGATCATCCTCAACC-GGA--TATCCCATG 646 Query 747 TGGATTTGAGGACACAAACGGAGAATCCAACTTGTGGAGACAGGTGGTTGAATCAACCAC 806 |||||||| |||||||||| ||||||| ||||| |||||||| |||||||||||||||| Sbjct 645 CGGATTTGAAGACACAAACGAAGAATCCGACTTGAGGAGACAGCTGGTTGAATCAACCAC 586 Query 807 ACATACACCTAGTCTTAACAATGAGTACGACGAGTGGTTCAACTTCATCGACAACCAAAC 866 || | || | |||||||||||||||||||||||||||||| ||||||||||| Sbjct 585 AC---C---TA-----A-CAATGAGTACGACGAGTGGTTCAACTTCATTGACAACCAAAC 538 Query 867 TTACTTTGATGATTTTAATTTCGTCGGAGAAGTATGTCCATGAATG 912 |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 537 TTACTTTGATGATTTTAATTTCGTCGGAGAAGTATGTCTATGAATG 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44557688389 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5