BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474689
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56190.1 | Symbols: | Phosphoglycerate kinase family protei... 2712 0.0
AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:... 1602 0.0
> AT1G56190.1 | Symbols: | Phosphoglycerate kinase family protein
| chr1:21028238-21030649 FORWARD LENGTH=1797
Length=1797
Score = 2712 bits (1468), Expect = 0.0
Identities = 1678/1775 (95%), Gaps = 31/1775 (2%)
Strand=Plus/Plus
Query 1 ATGATCTTTGTGAATGTGGCCCA-GATTGTATGCAGA-GGAAGGTGAAAGAATTATGATA 58
||||||||||||||||||| | | ||||||| ||||| |||||| | |||||||||||||
Sbjct 1 ATGATCTTTGTGAATGTGGGCAACGATTGTAAGCAGAGGGAAGGCG-AAGAATTATGATA 59
Query 59 ACCTCTCATCAACGATAAGACAAAATCCAGAAACTTGTAATATCATCCAATCCTCTCACT 118
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 60 ACCTCTCATCAACGATAAGACAAAATCCATAAACTAGTAATATCATCCAATCCTCTCA-- 117
Query 119 CTTCTTCCTTATTCTCTCACTTTCCCTCTCTCTACCCGTCGACTTCACATGGCTTCCACC 178
|||||||||||||| ||||||||| ||||| ||| | || ||||||||||||||||||||
Sbjct 118 CTTCTTCCTTATTCCCTCACTTTCACTCTCACTATCTGTTGACTTCACATGGCTTCCACC 177
Query 179 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCTTTACCCGCTCC 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 178 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCGTTACACGCTCC 237
Query 239 TCCCGCGCCTCCTTCT-TACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGCCTCGGCT 296
|||||||||||||| | || || |||| ||||| ||||||||||||||||||| ||||
Sbjct 238 TCCCGCGCCTCCTT-TGGACACATTCCC-TCCACATCTGTCTCCGCACGTCGCCTTGGCT 295
Query 297 TCTCCGCCGTCGTTGACTCGCGTTTCTCCGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 296 TCTCCGCCGTCGTTGACTCTCGTTTCTCGGTCCACGTGGCGTCCAAGGTCCACTCCGTGC 355
Query 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 GCGGAAAGGGCGCCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGAATT 415
Query 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 476
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTGTAGATTTGAAGGGGAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 475
Query 477 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTTT 536
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 476 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCCGCCATTCCCACCATCAAGTTTT 535
Query 537 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTCA 596
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAGGGTGTCA 595
Query 597 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTGTCAGAGCTCCTTGGTATTGAGG 656
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTATCAGAGCTCCTTGGTATTGAGG 655
Query 657 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCCTG 716
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAACCTTGGTGGCTTCCCTTCCTG 715
Query 717 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGAAC 776
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGAAC 775
Query 777 CTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGGGA 836
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 CTGATTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCGTTCGGGA 835
Query 837 CTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 896
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CTGCTCACAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 895
Query 897 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAAGA 956
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTTGGTGCGGTTTCAAACCCAAAGA 955
Query 957 GACCATTTGCTGCCATTGTGGGAGGTTCAAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1016
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 GACCATTTGCTGCCATTGTGGGAGGTTCCAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1015
Query 1017 CTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1076
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGCTTCTTGAGAAATGTGACATCCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1075
Query 1077 AGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1136
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1076 AGGCGCAAGGTCTTTCCGTTGGCTCCTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1135
Query 1137 CATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1196
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CAACACTCCTTGCCAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1195
Query 1197 TGATTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCCATTC 1256
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 TGATTGCTGACAAGTTCGCTCCTGATGCCAACAGCAAGATTGTGCCAGCATCAGCCATTC 1255
Query 1257 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAAGCTT 1316
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1256 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACATTCAACGAAGCTC 1315
Query 1317 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1375
Query 1377 TTGCACAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGTAAAAAGGGAGTGA 1436
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1376 TTGCAAAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGCAAAAAGGGAGTGA 1435
Query 1437 CAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1496
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1436 CAACGATAATAGGAGGAGGAGACTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1495
Query 1497 TCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1556
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1496 TCATGAGTCACATCTCCACAGGTGGTGGTGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1555
Query 1557 TTCCCGGTGTGGTCGCCCTTGATGAAGCAACGCCAGTCACGGTTTAACAAAATTCTCTTT 1616
|||||||||| ||||| ||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 1556 TTCCCGGTGTCGTCGCTCTTGATGAAGCAACGCCAGTCACTGTTTAACAACAT-CTCTTT 1614
Query 1617 ATTATTATTACACCTGAAGGGACCTC---AA-TGAGTTTCTTCTT---ATTCTGTTGTAA 1669
|||| |||||||||||||| | || ||||||||||||| ||||||||||||
Sbjct 1615 ATTA------CACCTGAAGGGACCCCCCTAAATGAGTTTCTTCTTCTTATTCTGTTGTAA 1668
Query 1670 ATCT--GT-TATTGTTGTACCACCAA-TCCATAGAGAGAGGAGAGACTCTTTTTGTCTCA 1725
||| || | ||||||||||| ||| ||||||||||| | || ||||||||||||||||
Sbjct 1669 ATCAAAGTCT-TTGTTGTACCATCAAATCCATAGAGAG-G-AGGGACTCTTTTTGTCTCA 1725
Query 1726 AATAAAATCAAAATCCAATGACTTTCGTTATTTTG 1760
|||||||||||| | || |||| ||||||||||||
Sbjct 1726 AATAAAATCAAA-TACAGTGACATTCGTTATTTTG 1759
> AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:4060971-4063306
REVERSE LENGTH=1768
Length=1768
Score = 1602 bits (867), Expect = 0.0
Identities = 1209/1373 (88%), Gaps = 27/1373 (2%)
Strand=Plus/Plus
Query 245 GCCT-CCTTCTTACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGC-CTCGGCTTCTCC 301
|||| ||||| | || | |||| || ||| |||| ||||| |||| | || |||||||||
Sbjct 251 GCCTCCCTTC-TGCCAATTCCC-TCTACCTCTGTTTCCGCGCGTC-CTCTAGGCTTCTCC 307
Query 302 GCC-GTCGTTGA--CTCG-CGTTTCTC-CGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356
||| || | || | || |||||||| | ||||||| |||||||| || | || ||||
Sbjct 308 GCCACTC-TAGATTCCCGTCGTTTCTCTC-TCCACGTTGCTTCCAAAGTTGAATCGGTGC 365
Query 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416
| || ||||||| ||| |||||| || | |||||||||||||| || ||||||||||| |
Sbjct 366 GTGGGAAGGGAAGCAGAGGAGTGGTTTCTATGGCGAAGAAGAGCGTCGGAGATCTGACCT 425
Query 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTT-GTTAGAGCTGATCTCAATGTACCTCTCGAT 475
| || ||||||||||| |||||||| ||| || |||||||||||||||||||||||||||
Sbjct 426 CAGCTGATTTGAAGGGGAAGAAGGT-TTTCGTGAGAGCTGATCTCAATGTACCTCTCGAT 484
Query 476 GACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTT 535
|| || |||| |||||||||||| || |||||| | || |||||||| || || |||| |
Sbjct 485 GATAATCAGACTATCACTGACGATACCAGAATCCGTGCCGCCATTCCAACGATCAAGTAT 544
Query 536 TTGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTC 595
|||||||| ||||||||||| || ||||||||||||||| ||||||||||||| || |||
Sbjct 545 TTGATTGAAAATGGTGCTAAAGTTATCCTCTCCACTCATCTGGGAAGGCCAAAGGGAGTC 604
Query 596 ACTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCC-AGATTGTCAGAGCTCCTTGGTATTGA 654
|| |||||||| || ||||||||||||| |||| || | || ||||| |||||||||||
Sbjct 605 ACCCCAAAGTTTAGTTTGGCTCCTCTTG-TCCCTAGGCTCTCCGAGCTTCTTGGTATTGA 663
Query 655 GGTCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCC 714
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 664 GGTCACGAAAGCTGATGATTGTATTGGCCCAGAAGTGGAAAGCTTGGTGGCTTCTCTACC 723
Query 715 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGA 774
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 724 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTCAGGTTTTACAAGGAGGAAGAGAAGAACGA 783
Query 775 ACCTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGG 834
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 784 TCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATGCTTTCGG 843
Query 835 GACTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGT 894
|||||||| ||||| |||||||| || || ||||||||||||||||||||||| |||||
Sbjct 844 AACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGCCTTCAGT 903
Query 895 TGCTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAA 954
|||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct 904 TGCTGGTTTCCTTTTGCAAAAGGAACTGGACTACCTAGTTGGTGCTGTTTCAAACCCAAA 963
Query 955 GAGACCATTTGCTGCCATTGTGGGAGGTT-CAAAGGTCTCATCTAAGATTGGAGTTATCG 1013
|||||||||||| ||||| ||||| |||| |||| |||||||| |||||||||||||| |
Sbjct 964 GAGACCATTTGCAGCCATAGTGGGTGGTTCCAAA-GTCTCATCCAAGATTGGAGTTATTG 1022
Query 1014 AATCTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCT 1073
|||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1023 AATCGCTTCTGGAGAAGTGTGATATTCTTCTTCTTGGTGGTGGAATGATCTTCACATTCT 1082
Query 1074 ACAAGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1133
||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1083 ACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1142
Query 1134 CTACATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATG 1193
||||| ||||||||| || |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 1143 CTACAGAACTCCTTGCCAAAGCTAAGGCCAAAGGAGTCTCTCTTTTGTTGCCAACAGATG 1202
Query 1194 TTGTGA-TTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCC 1252
|||| | ||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1203 TTGT-AGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCTGCATCAGGC 1261
Query 1253 ATTCCTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAA 1312
||| || || ||||||||| ||||||| ||||||||||| | |||||||||||||||
Sbjct 1262 ATTGAGGACGGATGGATGGGACTGGACATTGGTCCAGACTCTATCAAAACTTTCAACGAA 1321
Query 1313 GCTTTGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAA 1372
||| |||| || || || |||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1322 GCTCTGGACACAACACAAACAGTCATTTGGAATGGACCTATGGGAGTTTTCGAGATGGAA 1381
Query 1373 AAGTTTGCA-CAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGT-AAAAAGG 1430
|||||||| | ||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1382 AAGTTTGCGGCT-GGAACAGAGGCGATAGCGAATAAACTAGCAGAGCTAAGTGAAAAAGG 1440
Query 1431 GAGTGACAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAG 1490
||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||
Sbjct 1441 -AGTGACAACGATAATAGGAGGAGGAGACTCAGTGGCTGCAGTGGAGAAAGTAGGAGTAG 1499
Query 1491 CAGGAGTCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCA 1550
||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
Sbjct 1500 CAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTTGGAGCTGTTGGAAGGAA 1559
Query 1551 AAGTGCTTCCCGGTGTGGTCGCCCTTGATGAAGCAA-CGCCAGTCACGGTTTA 1602
|||| |||||||||||| |||||||||||||||||| | |||||||| |||||
Sbjct 1560 AAGTACTTCCCGGTGTGATCGCCCTTGATGAAGCAATC-CCAGTCACTGTTTA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87047745030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5