BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474690
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56200.1 | Symbols: emb1303 | embryo defective 1303 | chr1:2... 804 0.0
> AT1G56200.1 | Symbols: emb1303 | embryo defective 1303 | chr1:21030794-21032078
FORWARD LENGTH=715
Length=715
Score = 804 bits (435), Expect = 0.0
Identities = 526/567 (93%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 1 GCTTTTGCCATGGCTATGGCGGCGTCTATCATCCAATCTTCTCCGCTCTCATTCAATAGT 60
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 50 GCTTTAGCCATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGC 109
Query 61 AGCAACGAAAAGCTGCGGATTCATAGTTCAGGATCGCTCGGTGGAATCAAATTG-CAAAA 119
| ||||| ||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 110 AACAACGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAA-AGCCAAAA 168
Query 120 TAGAGTGTCTCCA-T---T---G--GGATTGAGCTCAGGCCTTGGAAGTAGAAGGCAATC 170
|||||| |||||| | | | ||||| |||||||||||||||||||||||| ||||
Sbjct 169 TAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATC 228
Query 171 TCTTTTGATATGTCACTCAGCTATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 230
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 229 TCTTTTGATATGTCACTCAGCCATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 288
Query 231 TACTCGGGAGTCACCGACAATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 290
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 348
Query 291 CCTAGACGATGGAGGAGACGGGTTCCCACCACGAGATGATGGAGATGGAGGTGGTGGAGG 350
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 349 CCTAGACGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGG 408
Query 351 AGGGGGTGGAGGCAACTGGTCAGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 410
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 468
Query 411 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAGAAAAT 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 469 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATA-ATAAT 527
Query 471 ATGA-C-ACAT-TTGGTCAATCTTATTACAGCTACAGGTCTCATTTTGTATCTGTTTCGT 527
||| | || | ||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 528 ATGGGCCAC-TCTTGGTTA-TCTTATTACAGCTACAGGACTCATTTTGTATCTGTTTCGT 585
Query 528 TGAGTGGGGGATGATATGCGTTGTATT 554
||||||||||||||||||| |||||||
Sbjct 586 TGAGTGGGGGATGATATGCCTTGTATT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5