BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474694
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54330.1 | Symbols: ANAC020, NAC020 | NAC domain containing ... 1672 0.0
> AT1G54330.1 | Symbols: ANAC020, NAC020 | NAC domain containing
protein 20 | chr1:20279567-20280952 REVERSE LENGTH=1117
Length=1117
Score = 1672 bits (905), Expect = 0.0
Identities = 968/999 (97%), Gaps = 1/999 (0%)
Strand=Plus/Plus
Query 1 TCTCTCGTTTTCTACCACATACACTTTTGAATGGCGCCCATGAGTTTGCCTCCAGGATTC 60
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 35 TCTCTCGTTTTCTAACGCATACAC-TTTGAATGGCGCCCATGAGTTTGCCTCCAGGATTC 93
Query 61 AGGTTTCATCCCACTGATGAAGAGCTGGTGGCTTACTATCTGGATCGGAAGGTCAACGGC 120
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 94 AGGTTTCATCCCACTGATGAAGAACTGGTGGCTTACTATCTTGATAGGAAGGTCAACGGC 153
Query 121 CGAGCCATTGAGCTCGAGATCATCCCAGAAGTTGATCTCTATAAATGCGAGCCATGGGAC 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 154 CAAGCCATTGAGCTCGAGATCATCCCAGAAGTTGATCTTTATAAATGCGAGCCATGGGAC 213
Query 181 TTGCCTGAAAAGTCATTTTTGCCGGGGAACGACATGGAATGGTACTTTTACAGCACAAGG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 214 TTGCCTGAAAAGTCATTTTTGCCGGGAAACGACATGGAATGGTACTTTTACAGCACAAGG 273
Query 241 GATAAGAAGTATCCAAACGGGTCGAGGACAAACCGTGCGACCCGAGAGGGTTACTGGAAG 300
||||||||||||||||| || || ||||| |||||||||||||||| |||||||||||||
Sbjct 274 GATAAGAAGTATCCAAATGGCTCTAGGACGAACCGTGCGACCCGAGCGGGTTACTGGAAG 333
Query 301 GCCACAGGGAAAGATCGTATAGTAGAATCGAAGAAAATGAAGATGGGAATGAAGAAGACA 360
||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 334 GCCACGGGGAAAGATCGTACAGTAGAATCAAAGAAGATGAAGATGGGAATGAAGAAGACA 393
Query 361 CTGGTTTACTATAGAGGAAGGGCTCCTCATGGCCTTCGTACTAATTGGGTGATGCATGAA 420
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 394 CTGGTTTATTATAGAGGAAGGGCTCCTCATGGCCTTCGTACTAATTGGGTCATGCATGAA 453
Query 421 TATCGTCTCACGCACGCTCCTTCCTCCTCCTTGAAGGAGTCGTATGCATTGTGCCGAGTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TATCGTCTCACGCACGCTCCTTCCTCCTCCTTGAAGGAGTCGTATGCATTGTGCCGAGTG 513
Query 481 TTTAAAAAGAACATACAAATTCCAaagagaaaaggggaagaagaagaagcagaagaagag 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TTTAAGAAGAACATACAAATTCCAAAGAGAAAAGGGGAAGAAGAAGAAGCAGAAGAAGAG 573
Query 541 agcacttgtgtaggaaaagaggaggaagaggaaaaggagaagaagtggagaaaaTGTGAT 600
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 574 AGCACTAGTGTAGGAAAAGAAGAGGAAGAAGAAAAGGAGAAGAAGTGGAGAAAATGTGAT 633
Query 601 GGTAATTGTATTGAAGACGAGAGCTTGAAAAGAGCATCCGCGGAGACATCTTCATCAGAG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGTAATTATATTGAAGACGAGAGCTTGAAAAGAGCATCCGCGGAGACATCTTCATCAGAG 693
Query 661 CTAACTCAAGGGGTCCTTTTAGACGAAGCAAACAGCTCATCCATATTTGCTCTTCATTTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CTAACTCAAGGGGTCCTTTTAGACGAAGCAAACAGCTCATCCATATTTGCTCTTCATTTC 753
Query 721 TCATCTTCTCTTCTGGACGATCATGATCAACTTTTCGCAAACTATTCTCATCAGCTTCCA 780
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 754 TCATCTTCTCTTCTGGACGATCATGATCATCTTTTCTCAAACTATTCTCATCAGCTTCCA 813
Query 781 TATCATCCTCCTCTTCAACTCCAAGATTTCCCTCAACTTTCTATGAACGAAGCAGAGATT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TATCATCCTCCTCTTCAACTCCAAGATTTCCCTCAACTTTCTATGAACGAAGCAGAGATT 873
Query 841 ATGTCAATCCAACAAGACTTTCAATGCAGAGACTCTATGAACGGGACACTTGACGAAATC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGTCAATCCAACAAGACTTTCAATGCAGAGACTCTATGAACGGGACACTTGACGAAATC 933
Query 901 TTCTCTTCTTCCGCCACTTTCCCCACTTCCCTTTGATAAATCCATATCTCATACTATCAT 960
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 934 TTCTCTTCTTCCGCCACTTTCCCCGCTTCCCTTTGATAAATCCATATCTCATACTATCAT 993
Query 961 CCAGTACTTCTTTTCTCAACTTATTTAATTATATTCGGG 999
| |||||||||||||||||||||||||| |||| |||||
Sbjct 994 CTAGTACTTCTTTTCTCAACTTATTTAAATATACTCGGG 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5