BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474695
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:2... 2268 0.0
AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocit... 699 0.0
> AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:20283480-20286786
FORWARD LENGTH=1571
Length=1571
Score = 2268 bits (1228), Expect = 0.0
Identities = 1304/1340 (97%), Gaps = 8/1340 (1%)
Strand=Plus/Plus
Query 1 AATTTCACTCGTCGATCA-T---AAGCTCTGCGGGCGAAGATGGAATTCGAGAAGATCAA 56
|||||||||||||||||| | || |||||||||| |||||||||||||||||||||||
Sbjct 1 AATTTCACTCGTCGATCATTACCAACCTCTGCGGGCAAAGATGGAATTCGAGAAGATCAA 60
Query 57 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 120
Query 117 CATCAAAGACAAGCTTATTTTCCCTTTCGTGGAGTTGGATATCAAATACTTTGATCTTGG 176
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 121 CATCAAAGACAAGCTTATTTTCCCTTTCCTGGAGCTGGATATCAAATACTTTGATCTTGG 180
Query 177 ACTGCCTAACCGCGATTTCACTGACGATAAGGTTACTATAGAGAGTGCTGAAGCTACTTT 236
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 181 ACTGCCTAACCGCGATTTCACTGATGATAAGGTTACTATAGAGACTGCTGAAGCTACTTT 240
Query 237 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 300
Query 297 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTATAAGGAACATTTTAAACGG 356
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATAAGGAACATTTTAAACGG 360
Query 357 CACAGTTTTCAGGGAGCCTATCATTTGCAGAAACATTCCTCGTATTGTTCCAGGATGGAC 416
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 361 CACAGTTTTCAGGGAACCTATCATTTGCAGAAACATCCCTCGTCTTGTTCCAGGATGGAC 420
Query 417 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATATCAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATCTCAT 480
Query 477 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 540
Query 537 AGAATTCGAAGTCTTCAATTTCACTGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 596
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 AGAATTCGAAGTCTTCAATTTCACCGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 600
Query 597 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 660
Query 657 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 720
Query 717 ATTCCAAGAAGTTTATGAAGCTAATTGGAGATCCAAGTATGAAGCTGCAGGGATATGGTA 776
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 721 ATTCCAAGAAGTTTATGAAGCTAACTGGAGATCCAAGTATGAAGCAGCAGGGATATGGTA 780
Query 777 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAGGGGGGTTATGT 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 781 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAAGGGGGTTACGT 840
Query 837 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 900
Query 897 ATCTCTGGGAATGATGACGTCGGTGTTGGTTTGTCCTGATGGAAAAACCATTGAAGCAGA 956
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 901 ATCTCTGGGAATGATGACTTCGGTGTTGGTTTGTCCAGATGGAAAGACCATTGAAGCAGA 960
Query 957 AGCAGCTCATGGCACAGTTACTCGCCACTACAGAGTTCACCAAAAAGGTGGTGAAACAAG 1016
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 961 AGCAGCTCATGGCACAGTTACACGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAG 1020
Query 1017 CACCAACAGCATAGCCTCCATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1076
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CACCAACAGCATAGCCTCTATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1080
Query 1077 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1140
Query 1137 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTCCTGATCCACGGACCCAAGGTTAG 1196
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1141 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTTCTGATCCACGGAGCCAAGGTTAG 1200
Query 1197 GAGGGATCAGTATGTGAATACAGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAGAAG 1256
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1201 GAGGGATCAGTATGTGAATACGGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAAAAG 1260
Query 1257 AAGATTGTTAGGCAAC---TCCAGGTTGTGAGAAGAA-GAATGGAAATCTGAAAAGCAAA 1312
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 AAGATTGTTAGGCAACAACTCCAGGTTGTGAGAAGAAAGAATGGAAATCTGAAAAGCAAA 1320
Query 1313 GAGTCGCAGCAGCGCGATGT 1332
||||| |||||||| |||||
Sbjct 1321 GAGTCTCAGCAGCGTGATGT 1340
Score = 122 bits (66), Expect = 7e-27
Identities = 120/143 (84%), Gaps = 16/143 (11%)
Strand=Plus/Plus
Query 1385 GGAACTCAGATTTCCCAAAGCCGAGACGACTCACTCCTCATTCAAACGTTCAAATTTGAA 1444
|||||||||||||||||||||| || ||||||||||||||| | |||| ||| |||||
Sbjct 1436 GGAACTCAGATTTCCCAAAGCC--GA-GACTCACTCCTCATTGATTCGTTAAAAATTGAA 1492
Query 1445 TC----T-----TTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAACCAATCAACA 1495
|| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1493 TCTTTTTAGCCCTTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAA----TCAACA 1548
Query 1496 GAAATGGCTACGTTCACTTTGTC 1518
||||||||||||||| | |||||
Sbjct 1549 GAAATGGCTACGTTCTCGTTGTC 1571
> AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate
dehydrogenase | chr1:24538886-24542129 FORWARD LENGTH=1703
Length=1703
Score = 699 bits (378), Expect = 0.0
Identities = 949/1219 (78%), Gaps = 61/1219 (5%)
Strand=Plus/Plus
Query 46 GAGAAGATCAAGGTGATC-AATCCCGTTGTTGAAATGGATGGAGACGAAATGACTC-GAG 103
||||||||||||||| | |||||| | || || |||||||| || |||||||| | | |
Sbjct 212 GAGAAGATCAAGGTG-GCAAATCCCATCGTCGAGATGGATGGTGATGAAATGAC-CAGGG 269
Query 104 TTATCTGGAAATTC-ATCAAAGACAAGCTTATTTTC-CCTTTCGTGGAGTTGGATATCAA 161
|||| ||| || || ||||| || ||||||| || | ||||| |||||||||||||||||
Sbjct 270 TTATTTGG-AAGTCTATCAAGGATAAGCTTA-TTACTCCTTTTGTGGAGTTGGATATCAA 327
Query 162 ATACTTTGATCTTGGACTGCCTAACCGCGATTTC-ACTGACGATAAGGTTACTATAGAGA 220
||||| || ||||| || ||| |||| || | | || || || || |||||||| || |
Sbjct 328 GTACTTCGACCTTGGTCTTCCTCACCGTGA-TGCTACGGATGACAAAGTTACTATTGAAA 386
Query 221 GTGCTGAAGCTACTTTA-AAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGAT 279
||||||||||||| | | ||||| |||||||| || |||||||| || || ||||| |||
Sbjct 387 GTGCTGAAGCTAC-TAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGAT 445
Query 280 GAA-GCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTAT 338
||| || ||||| | ||| || ||||| ||| | |||||||| ||||| || || || ||
Sbjct 446 GAAGGC-CGTGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCAT 504
Query 339 AAGGAACATTTTAAACGGCACAGT-TTTCAGGGAGCCTATCATTTGCAGAAACATT-CCT 396
||||| || | || || || || ||| || ||||| || || |||| ||| || ||
Sbjct 505 CAGGAATATCCTGAATGGAACTGTATTT-AGAGAGCCAATTATCTGCAAAAATGTTCCCA 563
Query 397 CGTATTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAG 456
| |||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 564 AG-CTTGTCCCAGGCTGGACAAAGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAG 622
Query 457 TATAGAGCCACTGATATCAT-TG-TCAATGAACCAGGAAAACTGAAACTA-GTT-TTTGA 512
|| | ||||||||| | | | |||| | |||||||||||||| ||| | |||||
Sbjct 623 TACCGTGCCACTGATG-C-TGTAATCAAGGGACCAGGAAAACTGA--CTATGACCTTTGA 678
Query 513 GCCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCA-ATTTCACTGGTGGAGGTG 571
| || | || |||||| ||| ||||||||| | |||| ||||||| |||||
Sbjct 679 GGGAAAAG-ATGG-----GAAAACTGAAACCGAAGTCTTTACATTT-ACTGGTGAAGGTG 731
Query 572 -T-T-GCTTTAGCCATGTATAACACTGATGAGTCTATTCGTGCATTTGCTGAGTCC-TCG 627
| | ||| | || ||||| |||||||||||||| || ||||| |||||||| | | |||
Sbjct 732 GTGTTGCTATGGCAATGTACAACACTGATGAGTCCATCCGTGCTTTTGCTGA-TGCATCG 790
Query 628 ATGTACACAGCTTACCAGAAAAAGTGGCCACTTTACCTCTC-CACAAAAAACACCATCCT 686
||| |||| ||||| |||||||||||||||||||||| | |||||| || ||||| ||
Sbjct 791 ATGAACACTGCTTATGAGAAAAAGTGGCCACTTTACCT-TAGCACAAAGAATACCATTCT 849
Query 687 CAA-AATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAATTGGA 745
|| || ||| ||||| |||||||| || || ||||||||||| |||||||| | ||||
Sbjct 850 TAAGAA-ATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCTGGA 908
Query 746 -GATCCAAGTATGAAGCTGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATGGTT 804
| || |||||||| ||||| || || |||||||| || ||| | || |||||||||||
Sbjct 909 AG-TCGAAGTATGATGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATGGTG 967
Query 805 GCATATGC-CATGAAAAGTGAGGGGGGTTATGTCTGGGCATGCAAGAATTACGATGGAGA 863
|| || || | | || |||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 968 GCCTACGCTCTT-AAGAGTGAGGGAGGCTATGTTTGGGCATGCAAAAACTATGATGGTGA 1026
Query 864 TGTACAGAGCGATTTCTTAGCCCAAGGATAT-GGATCTCTGGGAATGATGACGTCGGTGT 922
||| || || |||||||| || ||||||| | || || || ||| ||||||| || || |
Sbjct 1027 TGTCCAAAGTGATTTCTTGGCACAAGGAT-TCGGGTCACTTGGATTGATGACATCTGT-T 1084
Query 923 -TGGTTTGTCCTGATGGAAAAACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACTCGC 981
|||| || || |||||||| || |||||||| ||||| || ||||| || || || ||
Sbjct 1085 CTGGTCTGCCCAGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACCCGT 1144
Query 982 CACTACAGAGTTCACCAAAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCCATTTTT 1041
|||| ||| ||||| || ||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1145 CACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCTATTTTT 1204
Query 1042 GCTTGGTC-CAGAGGCCTTGCCCACAGGGCAAAGCTGGAC-AGCAATGCCGCACTCTTGA 1099
|||||| | | | || ||||| |||||||| ||| | || | ||| || |||||||
Sbjct 1205 GCTTGGACTC-GTGGACTTGCACACAGGGCTAAGTTAGATGA-CAACGCAAAACTCTTG- 1261
Query 1100 GCTAT-ACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATGACC 1158
| | | |||||||| || ||||| ||||| | ||||| |||||||| || |||||||||
Sbjct 1262 GATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATGACC 1321
Query 1159 AAGGATCTAGCTCTCCTGATCCACGGACCCAAGG-TTAGGAGGGATCA-GTATGTGAATA 1216
|| ||||| || ||| | || ||||| | ||| | || |||||| || ||| |||| |
Sbjct 1322 AAAGATCTTGCACTCATCATTCACGG-CTCAAAGCTTTCGAGGGA-CACGTACCTGAACA 1379
Query 1217 CAGAAGAGTTCATTGATGC 1235
|||| |||||||| |||||
Sbjct 1380 CAGAGGAGTTCATCGATGC 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5