BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474701 Length=1553 Score E Sequences producing significant alignments: (Bits) Value AT1G54360.2 | Symbols: TAF6B | TBP-ASSOCIATED FACTOR 6B | chr1:... 1871 0.0 > AT1G54360.2 | Symbols: TAF6B | TBP-ASSOCIATED FACTOR 6B | chr1:20290572-20293266 FORWARD LENGTH=1718 Length=1718 Score = 1871 bits (1013), Expect = 0.0 Identities = 1179/1255 (94%), Gaps = 28/1255 (2%) Strand=Plus/Plus Query 118 CAGGAAGCTATCAAATGCATGCGCCATGCTCGCCGCACCACTTTAATGGCTCATGATGTC 177 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 215 CAGGAAGCTATCAAATGCATGCGTCATGCTCGACGCACCACTTTAATGGCTCATGATGTC 274 Query 178 GATTCTGCTCTTCATTTCAGGAATTTGGAGGTTTCCTCTTCCTCTCTTCTCCTGCCTACC 237 |||||||||||||||||||||||||||||| ||| ||||| | Sbjct 275 GATTCTGCTCTTCATTTCAGGAATTTGGAG----CCTA--CCTCT--------G------ 314 Query 238 TCCGGCTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTCTACTTCTTG 297 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 315 ---G-CTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTATACTTCTTC 370 Query 298 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 430 Query 358 GATGCATCTATTTTCTCT-CATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 416 ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 431 GATGCATCTGTTTTC-CTTCATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 489 Query 417 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 549 Query 477 GGCTGCTAGACAGGTGCTCTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACCGAGTG 536 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 550 GGCTGCTAGACAGGTGCTTTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACGGAGTG 609 Query 537 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCTCCAGCTTGGAAACTGA 596 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 610 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCGCCAGCTTGGAAATTGA 669 Query 597 CCCTGGACTCCACCCTTTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAG 656 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 TCCTGGACTCCACCCATTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAA 729 Query 657 GAACATGGATAATTACCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 716 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 AAACATGGATAATTATCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 789 Query 717 TAACCCTCATGTACATATTGAACCATATCTGCATCAATTCATGCCGTCTATTATCACTTG 776 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 790 TAACCCTCATGTACATATTGAGCCATATCTGCATCAGTTGATGCCGTCTATTATCACTTG 849 Query 777 CCTCATTGCCAAGAGCTTAGGAAGAAGGTCATCTGATAATCACTGGCACTTGAGAAACTT 836 ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 850 CCTTATTGCCAAGCGCTTAGGAAGAAGGTCATCTGATAATCACTGGGACTTGAGAAACTT 909 Query 837 CACTGCCAGTACAGTTGCTTCAACGTGCAAAAGGTATGGACACGTTTATCACAACTTGTT 896 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 910 CACTGCCAGCACAGTTGCTTCAACGTGCAAAAGGTTTGGACACGTTTATCACAATTTGTT 969 Query 897 GCCGCGTGTTACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTTCCACA 956 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 970 GCCACGTGTCACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTCCCACA 1029 Query 957 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAAAATGGTTCGCTTTCTTGT 1016 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1030 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAATATGGTTCGCTTTCTTGT 1089 Query 1017 TCTCCCAAACCTAGGGCCATATTTGCTGCTTCTTTTACCTGAAATGGAACCTGAGAAGCA 1076 |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| Sbjct 1090 TCTCCCAAACCTAGGGCCGTATTTGCTGCTTCTTTTACCTGAAATGGGACTTGAGAAGCA 1149 Query 1077 GAAGGACGAAGCGAAGAGGCACAGGGCTTGGCTCGTTTATGGAGCGTTGATGGTGGCAGC 1136 |||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1150 GAAGGAAGAAGCTAAGAGGCATGGGGCTTGGCTTGTTTATGGAGCGTTGATGGTGGCAGC 1209 Query 1137 TGGTCGATGCCTATATGAGA-GGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAAATA 1195 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || Sbjct 1210 TGGTCGATGCCTATATGA-ACGGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAACTA 1268 Query 1196 GCTCTGTCTGGAAGACAAATGGAAAGCTTACCAGTCCCAGCCAAAGTAAACGCAAGGCAA 1255 |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||| Sbjct 1269 GCTCTGTCTGGAAGACAAATGGAAAGCTCACCAGCCCCAGGCAAAGTAAACGCAAAGCAA 1328 Query 1256 GTAGTGACAACTTAACTCATCAACCACCACTGAAAAAGATAGCAGTAGGGGGAATTATGC 1315 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1329 GCAGTGACAACTTAACTCATCAACCACCACTGAAGAAGATAGCAGTAGGGGGAATTATAC 1388 Query 1316 AAATGAGCTCCGCACAGATGCAGATGCACGGAACCACAACAGTCCCGCAACAGTC 1370 ||||||||||| |||| |||||||||| |||||||||||||||||| |||||||| Sbjct 1389 AAATGAGCTCCACACAAATGCAGATGCGCGGAACCACAACAGTCCCTCAACAGTC 1443 Score = 220 bits (119), Expect = 2e-56 Identities = 153/169 (91%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 1387 ATTGCTCCGAGGACTTCAGCTGCT-CTGGGTACTGACGTGGACAACTATCTCTTTCCTCT 1445 |||||||||| ||||||||||||| | || |||||||| |||||||||||||||||||| Sbjct 1487 ATTGCTCCGAAGACTTCAGCTGCTGC-AGGCACTGACGTCGACAACTATCTCTTTCCTCT 1545 Query 1446 TTTTGAATATTTTGGCGAGAGCATGCTTATGTTCACCCCCAAACATGAGCTCAGTTTCTT 1505 |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1546 TTTTGAGTATTTTGGTGAGAGCATGCTTATGTTCACCCCCACACATGAGCTCAGTTTCTT 1605 Query 1506 CTTGTAATAGATCATTTACATGC-AAGTGTTTGTACCACAATGAATACA 1553 |||||||||||| ||| ||||| || ||| ||||||||||| |||||| Sbjct 1606 CTTGTAATAGATTATTGACATGGTAATTGTATGTACCACAATAAATACA 1654 Score = 185 bits (100), Expect = 9e-46 Identities = 114/121 (94%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1 ATGGTGACGAAGGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCAGTCTTTCT 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 29 ATGGTGACGAAAGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCACTCTTTCT 88 Query 61 CCGGAAGTCTCAGCGGCTCTTGCTCCCGATGTCGAGTATCGTGTCCTAGAGGTGATGCAG 120 ||||| |||||||| |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct 89 CCGGACGTCTCAGCCGCTCTTGCTCCCGATGTCGAGTATCGCGTCCGAGAGGTCATGCAG 148 Query 121 G 121 | Sbjct 149 G 149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76656232215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5