BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474701
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54360.2 | Symbols: TAF6B | TBP-ASSOCIATED FACTOR 6B | chr1:... 1871 0.0
> AT1G54360.2 | Symbols: TAF6B | TBP-ASSOCIATED FACTOR 6B | chr1:20290572-20293266
FORWARD LENGTH=1718
Length=1718
Score = 1871 bits (1013), Expect = 0.0
Identities = 1179/1255 (94%), Gaps = 28/1255 (2%)
Strand=Plus/Plus
Query 118 CAGGAAGCTATCAAATGCATGCGCCATGCTCGCCGCACCACTTTAATGGCTCATGATGTC 177
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 215 CAGGAAGCTATCAAATGCATGCGTCATGCTCGACGCACCACTTTAATGGCTCATGATGTC 274
Query 178 GATTCTGCTCTTCATTTCAGGAATTTGGAGGTTTCCTCTTCCTCTCTTCTCCTGCCTACC 237
|||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 275 GATTCTGCTCTTCATTTCAGGAATTTGGAG----CCTA--CCTCT--------G------ 314
Query 238 TCCGGCTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTCTACTTCTTG 297
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 315 ---G-CTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTATACTTCTTC 370
Query 298 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 430
Query 358 GATGCATCTATTTTCTCT-CATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 416
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GATGCATCTGTTTTC-CTTCATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 489
Query 417 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 549
Query 477 GGCTGCTAGACAGGTGCTCTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACCGAGTG 536
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 550 GGCTGCTAGACAGGTGCTTTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACGGAGTG 609
Query 537 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCTCCAGCTTGGAAACTGA 596
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 610 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCGCCAGCTTGGAAATTGA 669
Query 597 CCCTGGACTCCACCCTTTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAG 656
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TCCTGGACTCCACCCATTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAA 729
Query 657 GAACATGGATAATTACCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 716
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AAACATGGATAATTATCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 789
Query 717 TAACCCTCATGTACATATTGAACCATATCTGCATCAATTCATGCCGTCTATTATCACTTG 776
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 790 TAACCCTCATGTACATATTGAGCCATATCTGCATCAGTTGATGCCGTCTATTATCACTTG 849
Query 777 CCTCATTGCCAAGAGCTTAGGAAGAAGGTCATCTGATAATCACTGGCACTTGAGAAACTT 836
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 850 CCTTATTGCCAAGCGCTTAGGAAGAAGGTCATCTGATAATCACTGGGACTTGAGAAACTT 909
Query 837 CACTGCCAGTACAGTTGCTTCAACGTGCAAAAGGTATGGACACGTTTATCACAACTTGTT 896
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 910 CACTGCCAGCACAGTTGCTTCAACGTGCAAAAGGTTTGGACACGTTTATCACAATTTGTT 969
Query 897 GCCGCGTGTTACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTTCCACA 956
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 970 GCCACGTGTCACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTCCCACA 1029
Query 957 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAAAATGGTTCGCTTTCTTGT 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1030 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAATATGGTTCGCTTTCTTGT 1089
Query 1017 TCTCCCAAACCTAGGGCCATATTTGCTGCTTCTTTTACCTGAAATGGAACCTGAGAAGCA 1076
|||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 1090 TCTCCCAAACCTAGGGCCGTATTTGCTGCTTCTTTTACCTGAAATGGGACTTGAGAAGCA 1149
Query 1077 GAAGGACGAAGCGAAGAGGCACAGGGCTTGGCTCGTTTATGGAGCGTTGATGGTGGCAGC 1136
|||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1150 GAAGGAAGAAGCTAAGAGGCATGGGGCTTGGCTTGTTTATGGAGCGTTGATGGTGGCAGC 1209
Query 1137 TGGTCGATGCCTATATGAGA-GGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAAATA 1195
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 TGGTCGATGCCTATATGA-ACGGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAACTA 1268
Query 1196 GCTCTGTCTGGAAGACAAATGGAAAGCTTACCAGTCCCAGCCAAAGTAAACGCAAGGCAA 1255
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1269 GCTCTGTCTGGAAGACAAATGGAAAGCTCACCAGCCCCAGGCAAAGTAAACGCAAAGCAA 1328
Query 1256 GTAGTGACAACTTAACTCATCAACCACCACTGAAAAAGATAGCAGTAGGGGGAATTATGC 1315
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1329 GCAGTGACAACTTAACTCATCAACCACCACTGAAGAAGATAGCAGTAGGGGGAATTATAC 1388
Query 1316 AAATGAGCTCCGCACAGATGCAGATGCACGGAACCACAACAGTCCCGCAACAGTC 1370
||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 1389 AAATGAGCTCCACACAAATGCAGATGCGCGGAACCACAACAGTCCCTCAACAGTC 1443
Score = 220 bits (119), Expect = 2e-56
Identities = 153/169 (91%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 1387 ATTGCTCCGAGGACTTCAGCTGCT-CTGGGTACTGACGTGGACAACTATCTCTTTCCTCT 1445
|||||||||| ||||||||||||| | || |||||||| ||||||||||||||||||||
Sbjct 1487 ATTGCTCCGAAGACTTCAGCTGCTGC-AGGCACTGACGTCGACAACTATCTCTTTCCTCT 1545
Query 1446 TTTTGAATATTTTGGCGAGAGCATGCTTATGTTCACCCCCAAACATGAGCTCAGTTTCTT 1505
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1546 TTTTGAGTATTTTGGTGAGAGCATGCTTATGTTCACCCCCACACATGAGCTCAGTTTCTT 1605
Query 1506 CTTGTAATAGATCATTTACATGC-AAGTGTTTGTACCACAATGAATACA 1553
|||||||||||| ||| ||||| || ||| ||||||||||| ||||||
Sbjct 1606 CTTGTAATAGATTATTGACATGGTAATTGTATGTACCACAATAAATACA 1654
Score = 185 bits (100), Expect = 9e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1 ATGGTGACGAAGGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCAGTCTTTCT 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 29 ATGGTGACGAAAGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCACTCTTTCT 88
Query 61 CCGGAAGTCTCAGCGGCTCTTGCTCCCGATGTCGAGTATCGTGTCCTAGAGGTGATGCAG 120
||||| |||||||| |||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 89 CCGGACGTCTCAGCCGCTCTTGCTCCCGATGTCGAGTATCGCGTCCGAGAGGTCATGCAG 148
Query 121 G 121
|
Sbjct 149 G 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5