BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474702
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54370.1 | Symbols: NHX5, ATNHX5 | sodium hydrogen exchanger... 2830 0.0
> AT1G54370.1 | Symbols: NHX5, ATNHX5 | sodium hydrogen exchanger
5 | chr1:20293151-20297133 REVERSE LENGTH=1772
Length=1772
Score = 2830 bits (1532), Expect = 0.0
Identities = 1696/1774 (96%), Gaps = 16/1774 (1%)
Strand=Plus/Plus
Query 1 AATGGAGGAACTGGTGATTTCTCCGGTGGACCACGACCCTCAGGGCCAGGTTAAGCAGCA 60
|||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 AATGGAGGAAGTGATGATTTCTCCGGTGGAGCACGACCCTCAGGGCCAGGTTAAGCAGCA 63
Query 61 GCAAGCCGCCGGCGTTGGTATACTGCTTCAGATTATGATGCTCGTCCTTTCCTTCGTTCT 120
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 64 GCAAGCGGCCGGCGTTGGTATACTGCTTCAGATTATGATGCTCGTGCTTTCCTTCGTTCT 123
Query 121 CGGCCATGTCCTCCGCCGTCATCGATTCCACTATCTTCCTGAAGCCAGCGGTTCGCTTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CGGCCATGTCCTCCGCCGTCATCGATTCCACTATCTTCCTGAAGCCAGCGGTTCGCTTCT 183
Query 181 CATTGGTTTAATCGTCGGTGTACTTGCTAATATCTCCGATACTGAGACTAGCATTAGGAC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CATTGGTTTAATCGTCGGTATACTTGCTAATATCTCCGATACTGAGACTAGCATTAGGAC 243
Query 241 GTGGTTTAATTTCCACGAGGAGTTCTTCTTCTTGTTTCTGTTGCCTCCCATCATATTCCA 300
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 GTGGTTTAATTTCCACGAAGAGTTCTTCTTCTTGTTTTTGTTGCCTCCCATCATATTCCA 303
Query 301 GTCAGGTTTCAGTCTTCAACCTAAACCATTCTTCTCTAACTTTGGAGCCATTGTTACCTT 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 GTCAGGTTTCAGTCTTCAACCTAAACCATTCTTTTCTAACTTTGGAGCCATTGTTACCTT 363
Query 361 TGCTATCATCGGAACTTTTGTCGCTTCAGTTGTTACTGGTGGTCTGGTTTATCTTGGCGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TGCTATCATCGGAACTTTTGTCGCTTCAGTTGTTACTGGTGGTCTGGTTTATCTTGGCGG 423
Query 421 CTCTATGTATCTCATGTATAAACTTCCATTTGTTGAGTGTCTTATGTTTGGTGCACTTAT 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 424 CTCTATGTATCTCATGTATAAACTTCCCTTTGTTGAGTGTCTTATGTTTGGTGCACTTAT 483
Query 481 ATCAGCTACGGACCCTGTCACTGTACTGTCTATATTCCAGGATGTGGGCACCGATGTCAA 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 484 ATCAGCTACGGACCCTGTCACTGTACTCTCTATATTCCAGGATGTGGGCACCGATGTTAA 543
Query 541 CTTGTATGCTTTGGTCTTTGGAGAATCAGTTTTGAATGATGCTATGGCAATATCATTGTA 600
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 544 CCTGTATGCTTTGGTCTTTGGAGAATCAGTTCTGAATGATGCTATGGCAATATCATTGTA 603
Query 601 CAGAACAATGTCCTTAGTAAACCGCCAGTCCTCGTCTGGGGAACATTTTCTCATGGTGGT 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 604 CAGAACAATGTCCTTAGTAAACCGCCAGTCCTCGTCTGGGGAACATTTTTTCATGGTGGT 663
Query 661 GATCAGGTTTCTTGAGACTTTTGCTGGCTCAATGTCTGCAGGGGTTGGGGTTGGATTCAC 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GATCAGGTTTTTTGAGACTTTTGCTGGCTCAATGTCTGCAGGGGTTGGGGTTGGATTCAC 723
Query 721 TTCAGCTTTACTCTTTAAGTATGCAGGATTGGATACTGAGAATCTTCAGAACTTGGAGTG 780
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 724 TTCAGCTTTACTCTTTAAGTATGCAGGATTGGACACCGAGAATCTTCAGAACTTGGAGTG 783
Query 781 TTGTCTCTTTGTGCTTTTCCCGTATTTTTCATACATGCTTGCAGAAGGTGTTGGTCTCTC 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTGTCTCTTTGTACTTTTCCCGTATTTTTCATACATGCTTGCAGAAGGTGTTGGTCTCTC 843
Query 841 CGGCATTGTGTCTATACTCTTCACAGGAATTGTTATGAAACGTTACACTTTCTCAAATCT 900
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 844 CGGCATTGTTTCTATACTCTTCACAGGAATTGTTATGAAGCGCTACACTTTCTCAAATCT 903
Query 901 CTCAGAAGCTTCACAGAGTTTCGTATCTTCtttttttCACTTGATATCCTCGCTGGCTGA 960
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 904 CTCAGAAGCTTCACAGAGTTTCGTATCTTCTTTTTTTCACTTGATATCTTCGCTAGCAGA 963
Query 961 AACTTTCACGTTCATTTACATGGGATTTGATATTGCCATGGAGCAGCATAGCTGGTCCCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AACTTTCACGTTCATTTACATGGGATTTGATATTGCCATGGAGCAGCATAGCTGGTCCCA 1023
Query 1021 TGTTGGGTTTATCCTTTTCTCTATTTTGTTTATTGGCGTGGCTAGGGCTGTCAATGTATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TGTTGGGTTTATCCTTTTCTCTATTTTGTTTATTGGCGTGGCTAGGGCTGTCAATGTATT 1083
Query 1081 TGGGTGTGCATATTTGGTCAACCTATTTAGACAGGAGAACCAGAAGATACCTATGAAGCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGGGTGTGCATATTTGGTCAACCTATTTAGACAGGAGAACCAGAAGATACCTATGAAGCA 1143
Query 1141 CCAAAAAGCCCTTTGGTATAGTGGACTTCGAGGGGCAATGGCATTTGCGCTTGCACTTCA 1200
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1144 CCAAAAAGCCCTTTGGTATAGTGGACTTCGAGGGGCAATGGCATTTGCACTTGCACTTCA 1203
Query 1201 ATCACTTCATGACCTACCAGAGGGTCACGGCCAAATCATCTTTACTGCAACCACAACCAT 1260
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1204 ATCACTTCATGATCTACCAGAGGGTCACGGCCAAATCATCTTTACTGCAACCACAACTAT 1263
Query 1261 TGTTGTTGTCACGGTTTTACTAATAGGAGGTTCGACAGGTAAAATGTTGGAAGCTTTGGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TGTTGTTGTCACGGTTTTACTAATAGGAGGTTCGACAGGTAAAATGTTGGAAGCTTTGGA 1323
Query 1321 AGTTGTAGGTGATGATCTTGATGACTCCATGTCTGAAGGCTTTGAAGAGAGCGATCATCA 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AGTTGTAGGTGACGATCTTGATGACTCCATGTCTGAAGGCTTTGAAGAGAGCGATCATCA 1383
Query 1381 GTATGTCCCTCCTCCTTTTAGCATTGGAGCTTCATCTGACGAGGATACCTCATCCTCAGG 1440
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1384 GTATGTCCCTCCTCCTTTTAGCATTGGAGCTTCATCTGACGAGGATACATCATCATCAGG 1443
Query 1441 AAGCAGGTTCAAGATGAAGCTGAAAGAGTTTCACAAAACCACTACATCATTCACCGCGTT 1500
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1444 AAGCAGGTTCAAGATGAAGCTGAAGGAGTTTCACAAAACCACTACATCATTCACCGCGTT 1503
Query 1501 GGACAAAAACTTTCTGACACCGTTCTTCACAACTAACAGTGGAGATGGAGATGGAGATGG 1560
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1504 GGACAAAAACTTTCTGACTCCGTTCTTCACAACTAATAGTGGAGATGGAGATGGAGATGG 1563
Query 1561 GAATGGAGAGTAGCGTGGAAA-GATGAATATTTGTGGTCCAGGCCAAGTTTTAATTAGTA 1619
| | || |||| |||||| |||| |||||||||||||||||||| | ||||||| |
Sbjct 1564 G---G-AG--TAGCATGGAAAAGATGTGTATTTGTGGTCCAGGCCAAGCTATAATTAG-A 1616
Query 1620 TTCACATGCAAATGCCTATGTAAGATTACCACGGGTTAATTTTACCTCTCACAGAATGCC 1679
| ||| || ||| ||||||||||||| ||| |||| |||||||||||| || ||||||
Sbjct 1617 GT-ACA--CATATGTCTATGTAAGATTAACACTGGTTGATTTTACCTCTCGCAAAATGCC 1673
Query 1680 CGCTTTAAATTTGACAATCTACGAGATATCTCGAA-TGATTATATA--TGTATTCATTGT 1736
| || |||| ||||| || | | ||| || ||||| | |||||||| |||||| |||||
Sbjct 1674 CACTATAAAGTTGACGATTTCCAAGACATTTCGAAAT-ATTATATAGATGTATTTATTGT 1732
Query 1737 GGTACAAAGACTTGC-ATGTAAATAATCTATTAC 1769
|||||| | | || | |||| |||||||||||||
Sbjct 1733 GGTACATACAATTACCATGTCAATAATCTATTAC 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5