BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474703
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48920.1 | Symbols: TED7 | tracheary element differentiation... 597 4e-170
> AT5G48920.1 | Symbols: TED7 | tracheary element differentiation-related
7 | chr5:19835337-19836122 FORWARD LENGTH=786
Length=786
Score = 597 bits (323), Expect = 4e-170
Identities = 553/656 (84%), Gaps = 48/656 (7%)
Strand=Plus/Plus
Query 16 ACA-ACACACGCCCAAAATGGCTGCCTCTGTTGACTTCTTCCCCTTTTACCCACCACCGT 74
||| ||| || |||||||||||||||||||| || | ||| |||| |||| ||||||| |
Sbjct 52 ACATACATACTCCCAAAATGGCTGCCTCTGTGGAATACTTTCCCTATTACTCACCACCCT 111
Query 75 CCCATCAACATCCTCTCCCTTCTCCGTTCCCAGCCCCACCGCATCATCCGCCCCCTCCTT 134
||||||||||||||||||| | | | | ||| | | ||| ||||||||||
Sbjct 112 CCCATCAACATCCTCTCCC-T-T-C--T-------CCA--G--T--TCCACCCCCTCCTT 153
Query 135 CCCACATTGT-CCCTCCATCGCCCCCATCTTCTCGTCCCCATTacccaccgcca-c-c-t 190
|||||||| | ||||||| | || |||| ||||| ||| ||| ||||||| ||| | | |
Sbjct 154 CCCACATT-TCCCCTCCACCACCTCCATTTTCTCCTCCTCATCACCCACCACCACCACAT 212
Query 191 ccttc-cct-ct--t-tg-gtcctcc-tccacc--a-cctcttccccattcc-ccacc-t 238
||| ||| || | | || || | |||| | |||| ||| || ||| |||||
Sbjct 213 TTTTCTCCTCCTCATCAGCCACCGCCAT-CACCATATCCTCATCCTCA-TCCGCCACCAC 270
Query 239 c--caccatatcctcGTCCCCATCAGCCACCGCCTCCACCTCACGTTCTTccaccaccac 296
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CATCACCATATCCTCATCCCCATCAGCCACCGCCTCCACCTCACGTTCTTCCACCACCAC 330
Query 297 ca-c--ca-c--caccGGGGCATCATGTTATCATTGTGGTTGTTATCTCTCTTGGCAGTT 350
|| | || | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 331 CACCAACACCAGCACCGGGGCATCATGTTATCATTGTGGTTGTTATCTCTCTTGGAAGTT 390
Query 351 TGTTCCTTCTTGCATTCCTCGCTGCTGCTCTCTTCTGCTATCTCAAGAAAAGAAGAATGT 410
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 391 TGTTTTTTCTTGCATTCCTCGCTGCTGCTCTCTTCTGCTATCTCAAGAAAAGAAGAAAGT 450
Query 411 CTTCTACAAAGACTGAGATTATCAAGTTTGATGAACACCTCAAAGTCCAAGAAGTCATAG 470
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 451 CTTCTACAAAGGCTGAGATTATCGAGTTTGATGAACACCTCAAAGTCCAAGAAACCATAG 510
Query 471 TGCCAGGACCCCATGGCGAACCAACTAGAGTGGTAATGCTTGAAGAAGACATTCATTTGG 530
||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 511 TGCAAGGACCCCATGGCGAACAAACGAGAGTGGTAATGCTTGAAGAGGACATTCATTTGG 570
Query 531 AAGAGGACATTCACAAGACTGAAAAGCTTAGCAGAGCTAACCATCTCAGTTCAACTGGAG 590
|||||| |||||||||||||||||||||||| | ||| || |||||||||||||||
Sbjct 571 TAGAGGATATTCACAAGACTGAAAAGCTTAGCCGTCCTAGTCACCTCAGTTCAACTGGAA 630
Query 591 GACATGCGATTGATATATCAGATCCCAATCACCACTTTATTGAG-AACAAGGCCTA 645
||||||| |||||||| |||||||||||||| || |||| |||| || ||| ||||
Sbjct 631 GACATGCCATTGATATTTCAGATCCCAATCATCATTTTACTGAGCAA-AAGTCCTA 685
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 654 TAAATAAGGTACCAAATCTTGCAATCCAAAACTTGAT 690
|||||| ||||||||||||||||||||||||||||||
Sbjct 750 TAAATATGGTACCAAATCTTGCAATCCAAAACTTGAT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5