BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474706
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54390.2 | Symbols: ING2 | PHD finger protein-related | chr1... 1221 0.0
> AT1G54390.2 | Symbols: ING2 | PHD finger protein-related | chr1:20304583-20307024
REVERSE LENGTH=1318
Length=1318
Score = 1221 bits (661), Expect = 0.0
Identities = 721/750 (96%), Gaps = 4/750 (1%)
Strand=Plus/Plus
Query 1 CCCAATTCAAAACCCTAGCCT-TAGCCTGA-GCTCCATAATCAAATCCAATTTATCAGAG 58
|||||||| ||| ||||| || || || | |||||||||||||||||| || |||||||
Sbjct 17 CCCAATTCGAAATCCTAG-CTGAAGTCT-ATGCTCCATAATCAAATCCAGTTCATCAGAG 74
Query 59 ATCAAAGATGGCTATTGCACGAACTGGAGTTTATGTTGATGATTACCTTGAGTATGCAAG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATCAAAGATGGCTATTGCACGAACTGGAGTTTATGTTGATGATTACCTTGAGTATGCAAG 134
Query 119 CACTTTCCCTGCAGAGCTACAAAGACTACTAAACACAGTTCGCGAGCTAGACGAGAGATC 178
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 135 CACTTTCCCTGCAGAGCTACAAAGATTACTAAACACAGTTCGCGAACTAGACGAGAGATC 194
Query 179 TCAATCGCTTATAAATCAGACAAGGCAGCAAACTAAGTATTGCTTAGGGCTTGCTTCACA 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 195 TCAATCGCTTATAAATCAGACAAGACAGCAAACTAAGTATTGCTTAGGGCTTGCTTCACA 254
Query 239 GAGTTCTAAAAAGGGTAATGGTAATCATTACAATAATGGTGGTCTTGATGAAGAGGAAAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GAGTTCTAAAAAGGGTAATGGTAATCATTACAATAATGGTGGTCTTGATGAAGAGGAAAC 314
Query 299 GATTGAGAAAATGCGTAAAGAGATCGAGTCTAGTCAGGAAAATGCGTTAAGTTTGTGTAC 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 GATTGAGAAAATGCGTAAAGAGATTGAGTCTAGTCAGGAAAATGCGTTAAGTTTGTGTAC 374
Query 359 AGAGAAGGTCTTATTGGCCCGACAAGCGTATGATCTTATAGATAGTCATGTAAAACGACT 418
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CGAGAAGGTTTTATTGGCCCGACAAGCGTATGATCTTATAGATAGTCATGTAAAACGACT 434
Query 419 TGATGAAGATCTGAATAATTTTGCAGAAGATTTAAAGCAAGAGGGAAAAATACCACAAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 435 TGATGAAGATCTGAATAATTTTGCAGAAGATTTAAAGCAAGAGGGAAAAATTCCACCAGA 494
Query 479 CGAGCCCTCCGTTCTTCCTCCACTACCTATAGTTCCTAAACCGGAAAAGCGTAAGTCCTT 538
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 495 CGAGCCCTCTGTTCTTCCTCCACTACCTATAGTTCCTAAAGCGGAAAAGCGTAAGTCCTT 554
Query 539 CTATGGCACACCTCAGTCCAAGAAGATTGATTACAGAGATAGGGAGTGGGATCGTGATAG 598
|||||||||||||||| |||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 555 CTATGGCACACCTCAGCCCAAGAAGATTGATTATAGAGATAGAGACTGGGATCGTGACAG 614
Query 599 AGATTTTGAGCTCATGCCTCCTCCAGGAAGCAATCGGAAAGATCTCATGCCAATCGAAGA 658
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 615 GGATTTTGAGCTCATGCCTCCTCCAGGAAGCAATCGGAAAGACCTTATGCCAATTGAAGA 674
Query 659 GCAGCCAATCGATCCAAACGAACCAACTTACTGTGTCTGCCATCAGGTGTCCTTTGGAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GCAGCCAATCGATCCAAACGAACCAACTTACTGTGTCTGCCATCAGGTGTCCTTTGGAGA 734
Query 719 CATGATTGCCTGTGACAATGAGAATGTGAG 748
||||||||||||||||||||||||||||||
Sbjct 735 CATGATTGCCTGTGACAATGAGAATGTGAG 764
Score = 627 bits (339), Expect = 1e-178
Identities = 430/472 (91%), Gaps = 13/472 (3%)
Strand=Plus/Plus
Query 776 TTCCTGTTTGGACAGTGCCAAGGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACA 835
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTCCTGTTTCGACAGTGCCAAGGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACA 887
Query 836 CCTGAGACCAGATTCAAAGGGAAATGGTATTGCCCCACCTGCAGGCTCCTCCCACAGTCA 895
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 888 CCTGAGACCAGATTCAAAGGGAAATGGTACTGCCCCACCTGCAGACTCCTCCCACAGTCA 947
Query 896 CATTAATATCATTC---CCTGTGACAAGGTGCCAATGGCATCTTCCTTGGCACCTTTGCT 952
|| |||||||||| ||||||| ||||||||| |||||||||| |||||||||| ||
Sbjct 948 CACTAATATCATTTGTACCTGTGAGAAGGTGCCACTGGCATCTTCTTTGGCACCTTCCCT 1007
Query 953 TCATGACCAGTGTCACCAATCTCATCTTTCTTGCTACGCATCATCTAGCAAGTGCAAGTA 1012
||||||||| || |||||| ||||||||||||| ||| || |||||||||||||||||||
Sbjct 1008 TCATGACCAATGCCACCAAACTCATCTTTCTTGTTACCCAACATCTAGCAAGTGCAAGTA 1067
Query 1013 GAAGCAAACTTTAGATGGAGAAAACATCATGTTTTGTACAAC-TCGGGTTAATTCTTGGA 1071
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||
Sbjct 1068 GAAGCAAACTTTAGATGGAGAAATCATCATGTTTTGTA-AACCTCGGGTTAATTCGTGGA 1126
Query 1072 TCTTATATTTTGTATATCAATTGTAGTTGGGTGTTGGTGGGTATTTTCCGTTTTATTCTA 1131
| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 1127 GCATATATTTTGTATATCAATTGTATTTGGGTATTGGTGGGCATTTTCCGTTTTATTCTA 1186
Query 1132 CTAGTACCGATATTTTCATCTGCTTCT--CTTT-TT----CCC-TCAAACCATGAGCATT 1183
|||||| |||||||| ||||||||||| |||| || ||| ||||||||||||| ||
Sbjct 1187 CTAGTATCGATATTTACATCTGCTTCTTTCTTTCTTTTTTCCCCTCAAACCATGAGCCTT 1246
Query 1184 TGTATTGATCAAATGACATGTACAAAGTTTTTGTTCATCACAAGGGATTTCA 1235
||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1247 TGTATTGATCAAATGACATGTACAAAGGTTTTGTTCATCAGAAGGAATTTCA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5