BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474709
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54385.1 | Symbols: | ARM repeat superfamily protein | chr1... 1740 0.0
AT3G03970.1 | Symbols: | ARM repeat superfamily protein | chr3... 58.4 3e-07
> AT1G54385.1 | Symbols: | ARM repeat superfamily protein | chr1:20301126-20303885
REVERSE LENGTH=2014
Length=2014
Score = 1740 bits (942), Expect = 0.0
Identities = 1179/1288 (92%), Gaps = 38/1288 (3%)
Strand=Plus/Plus
Query 711 GGTTTGTCAAAATGTGGTAGTTGCGTTGGACTCAAACTCCAACCAAACACATCTTCAAAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GGTTTGTCAAAATGTGGTAGTTGCGTTGGACTCAAACTCCAACCAAACACATCTTCAAAT 755
Query 771 GGGTCTGGTTATGTCACTTGCCAAACATAATCCTTTGATTGTTGAAGCCTATGCAAGGTT 830
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 756 GGGTTTGGTTATGTCACTTGCCAAGCATAATCCTTTGATTGTTGAAGCTTATGCAAGGTT 815
Query 831 GTTGATACACACGGGATTGCGAATTCTGGGATTCGGAGTATCTGAAGGAAACTCGCAGAA 890
| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 816 GCTGATACACACGGGGTTGCGAATTCTAGGATTTGGAGTATCTGAAGGAAACTCGCAGAA 875
Query 891 ACGGTTATCAGCAGTCCAAATGTTGAACTTCCTAATGAAGTGCTTGGACCCGAGAAGCAT 950
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 876 ACGATTATCAGCAGTCCAAATGTTGAACTTCCTTATGAAGTGCTTGGATCCGAGAAGCAT 935
Query 951 ATACTCCGAAGTTGAGTTAATAATCAAAGAAATGGAGAGGTGTCAATCTGATCAAATGGC 1010
|||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 936 ATACTCGGAAGTTGAGTTGATAATAAAAGAAATGGAGAGGTGTCAATCTGACCAAATGGC 995
Query 1011 TTATGTTAGAGGAGCTGCTTATGAAGCAATGATGACTTCAAAAAGAATAGCGGGAGAGCT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 996 TTATGTTAGAGGAGCTGCTTATGAAGCAATGATGACTTCAAAAAGAATAGCGGCAGAGCT 1055
Query 1071 CGAGTCGAAGCTGGAGAAGGGTTGTCGTTCTGTTACTGGTTCGAATTACAGTCGAAGAAA 1130
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1056 CGAGTCGAAGATGGAGAAAGGTTGTCGTTCTGTTACTGGTTCGAATTTCAGTCGAAGAAA 1115
Query 1131 CTGTTCAG-CCATTGTTAATGGTCATTTTCCTGATGACCCCTTATCACCTGAATCACAGA 1189
|||||| | ||| | | | |||||||| || |||||||||||||||||||||
Sbjct 1116 CTGTTC-GTCCA----T--T-G-----TTCCTGATTACTCCTTATCACCTGAATCACAGA 1162
Query 1190 CTCTAGGCTCGTTCAGCGGATATGATTCTCCGGTTGAGTCCTCGCCTATTTCTCATACTT 1249
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CTCTAGGCTCTTTTAGCGGGTATGATTCTCCGGTTGAGTCCTCGCCTATTTCTCATACTT 1222
Query 1250 CTTGTAACTCTGAATTTGATCGGCGGAGTGTGAATCGCAAACTTTGGAGACCTGATCAAA 1309
||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| | |
Sbjct 1223 CTTGTAACTCTGAATTTGATCGGAGGAGTGTGAACCGCAAACTTTGGAGACGTGATGAGA 1282
Query 1310 ATGGAGGAGGGGTTGATATCTCTTTAAAGGATGGTCTTTTCTCCGGTGTAACTAAAGGAA 1369
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1283 ATGGAGGAGTGGTTGATATCTCTTTAAAGGATGGTCTTTTCTCCCGTGTAACTAAAGGAA 1342
Query 1370 ACACCACTGTCTCTGATTCACCTCTTGTCCCCTATGACACTTGTGAAAATGGAGATGAAT 1429
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1343 GCACCACTGTCTCTGATTCACCTCTTGTACCGTATGATACTTGTGAAAATGGAGATGAAT 1402
Query 1430 TCGAAGGTTTTCTGATGGAAAGTTTGAGAAACAGGCGGCTGCAAAACACCACTCCTAGTC 1489
| ||||| ||||| ||||||||||| | | | |||||||||||||||||
Sbjct 1403 TTGAAGGGTTTCTAATGGAAAGTTT--G----A-------G--AAACACCACTCCTAGTC 1447
Query 1490 CTCAGAGACAGCGTTCACGACGTATCAATGCTGAAGATTTCAACATCTTCAGCACTCCAC 1549
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1448 CTCAGAGACAGCGTTCACGTCGCATCAATGCTGAAGATTTCAACATCTTCAGCACTCCAC 1507
Query 1550 GGAAGCTTATCAGCTCTCTTCAATATCCTGATGATGTTGACTTAGACCATTCAGATATCC 1609
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1508 GGAAGCTAATCAGCTCTCTTCAATATCCTGATGATGTTGATTTAGATCATTCAGACATCC 1567
Query 1610 AAAGTCCAATACCGAGAAGCG-GAAGAGAGAAAACCATAGGATCTCGCAAGAATCCTCAA 1668
|||||||||||| |||| ||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1568 AAAGTCCAATACTGAGAGGCGAGA-GAGAGAAAACCATAGGATCTCGCAAGAATCCTAAA 1626
Query 1669 CTCAGAAAGCAATTTTCAACCATGGCGGAAACAATGTCATCAACTGTCAAATTTAGTGGA 1728
||||||||||||||| ||||||||| ||||||||||||||||||| ||| | |||||| |
Sbjct 1627 CTCAGAAAGCAATTTCCAACCATGGTGGAAACAATGTCATCAACTATCACAGTTAGTGAA 1686
Query 1729 TATACATCTCAAACACAGATGATATCGGGTAAGAAGAAGAAGAAGA---TGAGCTATGCC 1785
| ||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1687 GACACAGCTCAAACACAGATGATAACCGGTAAGAAGAAGAAGAAGAAGATGAGCTATGCC 1746
Query 1786 AAATTCGTGATTGCGATATCATTTGTTGCGATGGCTCTCTTTACAACCGTGATATTGATG 1845
||| |||| ||||||||||| ||||||| | |||||||||| |||| ||||||||||||
Sbjct 1747 AAACTCGTTATTGCGATATCTTTTGTTGTGGTGGCTCTCTTCGCAACTGTGATATTGATG 1806
Query 1846 GTGAATCAAGATGACGATGTTGGTTACTACACTGTTCCTACATGATTCACATCT-ATTTG 1904
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1807 GTGAATCAAGATGATGATGTTGGTTACTACACTGTCCCTACATGATTCACCTCTTATT-G 1865
Query 1905 GTGTTAAGTTCAATCGTAGTGTAGCAGAGAGAGTAGTTTAGCTGTTTAATTACGTGTTAG 1964
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1866 GTGTTAAGTTTAATCGTAGTGTAGCAGAGAGAGTAGTTTAGCTATTTAATTACGTGTTAG 1925
Query 1965 TTGTCTGTAATGAACTTCG-TACAAGAT 1991
|||| |||||||||||| | ||||||||
Sbjct 1926 TTGTTTGTAATGAACTT-GATACAAGAT 1952
Score = 861 bits (466), Expect = 0.0
Identities = 528/556 (95%), Gaps = 11/556 (2%)
Strand=Plus/Plus
Query 163 GTTTCATCTTTGTACGGTCAAAGCAAA-GA--AG-T---AGCT-CAAGTAGAAGAAGCA- 213
|||||||||||||||||||||| |||| | || | |||| | |||| ||||||||
Sbjct 101 GTTTCATCTTTGTACGGTCAAACCAAATAATTAGCTGAGAGCTCCCAGTATAAGAAGCAG 160
Query 214 GTTGGAGTAATGGGTTTGAATCTGAATCCAATTTTGCGACAAGAGTTGGCTAATCTTGAC 273
||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 161 GTT-GAGTAATGGGTTTGAATCTGAATCCAATATTGAGACAAGAACTGGCTAATCTTGAC 219
Query 274 AAAGACACAGAGAGTCGTAAATCAGCAATGAAAGCTCTTAAATCTTATGTGAAGGACTTG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 AAAGACACAGAGAGTCGTAAATCAGCAATGAAAGCTCTTAAATCTTATGTGAAGGACTTG 279
Query 334 GATTCAAAGGCTATTCCTGGTTTTCTAGCTCAAGTTTTCGAGACTAAAGAAACCAACTCT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GATTCAAAGGCTATTCCTGGTTTTCTAGCTCAAGTTTTCGAGACTAAAGAAACCAACTCT 339
Query 394 TTGTCCGGTGAATACACGATTTCGCTTTATGAAATACTTGCTCGTGTTCATGGACCTAAC 453
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 340 TTGTCCGGTGAATACACGATTTCGCTTTATGAAATCCTTGCTCGTGTTCATGGACCTAAC 399
Query 454 ATTGTTCCTCAGATTGATACAATCATGTCCACTATTGTCAAGACTTTGGCTTCAAGTGCT 513
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 ATTGTGCCTCAGATTGATACAATCATGTCCACTATTGTCAAGACTTTGGCTTCTAGTGCT 459
Query 514 GGTTCTTTCCCTCTTCAACAAGCTTGTTCGAAAGTTATTCCGGCAATTGCTCGATATGGG 573
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 460 GGTTCTTTCCCTCTTCAACAAGCGTGTTCGAAAGTTATTCCGGCGATTGCTCGATATGGG 519
Query 574 ATCGATCCGACAACTAAAGACGACAAGAAACGAGTTATAATCCACTCTTTGTGTAAGCCA 633
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATCGATCCGACTACTACAGAAGACAAGAAACGAGTTATAATCCACTCTTTGTGTAAGCC- 578
Query 634 TCTTACGGATTCTCTACTGGCCTCTCAAGAGAGCCTTACTTCAGGGGCTGCTTTGTGTTT 693
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TCTTACGGATTCTCTATTGGCCTCTCAAGAGAGCCTTACTTCAGGGGCTGCTTTGTGTTT 638
Query 694 GAAGGCTCTTGTGGAT 709
||||||||||||||||
Sbjct 639 GAAGGCTCTTGTGGAT 654
> AT3G03970.1 | Symbols: | ARM repeat superfamily protein | chr3:1027997-1030592
REVERSE LENGTH=1946
Length=1946
Score = 58.4 bits (31), Expect = 3e-07
Identities = 297/419 (71%), Gaps = 43/419 (10%)
Strand=Plus/Plus
Query 251 GACAAGAGTTGGCTAATCTTGACAAAGA-CACAGAGAGTCGTAA-ATCAGCAATGAAAGC 308
|||||||||||||||||||||||||||| | |||| | || | | ||||||| ||
Sbjct 163 GACAAGAGTTGGCTAATCTTGACAAAGATC-CAGATTCCCACAAGA-CTGCAATGA--GC 218
Query 309 TCTTA-A-ATCTTAT-GTGAAGGACTTGGATTCAAAGGCTA-TTCCTGGTTTTCTAGCTC 364
|| | ||| || ||||| || |||||| |||||| | ||| || |||| | ||||
Sbjct 219 AATTTGAGATCG-ATTGTGAAAGATTTGGATGCAAAGG-TGGTTCATGTTTTTGTTGCTC 276
Query 365 AAGTTT-TCGA-GACTAAAGAAACCAACTCTTT-GTCCGGTGAATACAC-G-ATTTCGCT 419
|| ||| | || | | ||||| | | | ||| |||| ||||| | || || ||
Sbjct 277 AACTTTCT-GATGTC-AAAGAGATTGGGT-TGGAGTCTGGTGGTTACACTGTATCTCTCT 333
Query 420 TTATGAAATAC-TTGCTCGTGTTCATGGAC-CTAACATTGTTCCTCAGATTGATACAATC 477
|| ||| || ||||||||| ||||||| | || |||| |||||| || || | |||
Sbjct 334 TT--GAAG-ACCTTGCTCGTGCTCATGGAGTC-AAGATTGCTCCTCATATAGACATTATC 389
Query 478 ATGTCCA-CTATTGTCAAGA-CTTTG-GCTTCAAGTGCTGGTTCTTTCCCTCTTCAACAA 534
||| || | ||| | |||| | ||| ||| || ||| || ||||| | | |||||||
Sbjct 390 ATG-CCGGCGATTAT-AAGAACATTGAGCTCCA-GTGAAGGGTCTTTACGTGTTCAACAG 446
Query 535 GCTTGTTCGAAAGTTATTC-CGGCAATTGCTCGATATGGGATCGATCCGACAACTAA-AG 592
||||| || || | | | | || || ||| ||||||| || ||||| ||||| | ||
Sbjct 447 GCTTGCTC-AAGGGCAGTAGCTGCTATGGCTAGATATGGAATTGATCCTACAAC-ACCAG 504
Query 593 ACGACAAGAAA-CGAGTTATAATCCACTCT-TTGTGTAAGCCA-TCTTACGGATTCTCT 648
| || |||||| ||| | | || || ||| || || |||||| ||| | ||||||||
Sbjct 505 AAGATAAGAAAACGAATG-TGATTCATTCTCTT-TGCAAGCCACTCT--CTGATTCTCT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98644070925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5