BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474711 Length=1756 Score E Sequences producing significant alignments: (Bits) Value AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20... 1631 0.0 AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 254 3e-66 > AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20297965-20300908 REVERSE LENGTH=1879 Length=1879 Score = 1631 bits (883), Expect = 0.0 Identities = 1023/1090 (94%), Gaps = 11/1090 (1%) Strand=Plus/Plus Query 666 GTGGAGGAGAAAACAATGGGAAGCAGTTTAGGAGAGTGTACACTAGGATCCAATTGGAGT 725 |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 566 GTGGAGTAGAAAACAATGGGAAGCAGTTTAGGAGATTGTACACTAGGAAACAATTGGAGT 625 Query 726 CAATGAGGTTTGCCCACACTGTGAATCAGAAGAAACTGTGGAGTGAGATGTATGCTAGGA 785 |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| Sbjct 626 CAATGAGGTTTGCCCACATTGTGAATCAGAAGAACCTGTGGAGTGAGATGTATTCTAGGA 685 Query 786 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATCTGAAGAATTACAAGAATT 845 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 686 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATGTGAAGAATTACAAGAGTT 745 Query 846 CAAAGTCTAATCGGGTTCGTGGGCAAACCGAGAGTTGCATTGGAGAAAATTTGGGTACTG 905 ||||||||||||| |||||||||| ||| |||||| ||| || |||||||||||| |||| Sbjct 746 CAAAGTCTAATCGTGTTCGTGGGCGAACGGAGAGTGGCAATGAAGAAAATTTGGGGACTG 805 Query 906 ATGAAGGAGCGGAGGACCTAACTCCTGAAGACTACACTGACGATAATGATGATTACAATA 965 | |||||| |||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 806 AAGAAGGAACGGAGG-----AC-CCTGAAGACTACACTGACGATAATGATGATTACAATA 859 Query 966 GCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 1025 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 860 GCATTTTGAGACCTGCGTTTGAAGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 919 Query 1026 AAGATGGGCTCGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTTA 1085 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 920 AAGATGGGCTTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTAA 979 Query 1086 GAGTAGCCAAGATAGATGAAAGCAAGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1145 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 980 GAGTAGCCAAGATAGATGAAAGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1039 Query 1146 TAATTCCTGAAATCCCCAAATGCCCAGAGTACCTCTTACCCATGAAGGAATGGGAGGACT 1205 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1040 TAATTCCTGAAATCCCCAAATGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACT 1099 Query 1206 CGTTGCTTTCCGACTTCATTCACCTTCGCCAGACTCTATCGCAAAGTGCCAACAGCTGTG 1265 ||||||||| ||||| | |||||||||||||||||| | ||||||||||||||||||| Sbjct 1100 CGTTGCTTTTGGACTTTGTACACCTTCGCCAGACTCTAACACAAAGTGCCAACAGCTGTG 1159 Query 1266 AGGATGAGATAGTATCAAGTCAGTGTGTAGAAGATTTACTTGTGGAGATATTCAATAAGC 1325 ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1160 AGGATGAGATAATATCAAGTCAGTGTGTAGAAGATTTGCTTGTGGAGATGTTCAATAAGC 1219 Query 1326 ATCTTCACACCGAGAAGGATGAGTCATTTGGTGGA-GTGGTATCAGACATACAAGGAATG 1384 |||| ||||| ||| |||||||||| |||||| || |||||| ||||||||||||||||| Sbjct 1220 ATCTCCACACAGAGGAGGATGAGTCTTTTGGT-GAGGTGGTAACAGACATACAAGGAATG 1278 Query 1385 GACTCGGTGACGCGGGTGTCGAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGATT 1444 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1279 GACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGAGC 1338 Query 1445 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1398 Query 1505 TTGGATGCTGATACTTGTGCTTGTCTCAGGGGTCTTCTGAGGAAGTGTGCAAGTGTTCGT 1564 |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1399 TTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGTGCTAGTGTTCGT 1458 Query 1565 GCAGAGAAATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATTCTCATC 1624 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1459 GCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATGCTCATC 1518 Query 1625 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTCATAAGTGACGAAGAGAGTCGAC 1684 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| Sbjct 1519 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTAATAAGTGAAGAAGAGAGTGGAC 1578 Query 1685 AGGTCATGCTCTTACTTTTCTCTCATATGTGCTTTTGAGTATATGAACATGAGCTTTAAT 1744 | | ||||| |||||||||||||||||||||||||||| | | | | ||||||||||||| Sbjct 1579 ATGACATGCCCTTACTTTTCTCTCATATGTGCTTTTGAATCT-T-A-CATGAGCTTTAAT 1635 Query 1745 GCCATTTTTT 1754 |||||||||| Sbjct 1636 GCCATTTTTT 1645 Score = 344 bits (186), Expect = 2e-93 Identities = 324/387 (84%), Gaps = 24/387 (6%) Strand=Plus/Plus Query 207 ACAATAGGGATCTGCAACAGATAAAAGAATCATCTTTCTTTAAAGAAAGTGAGCAATTTG 266 ||||||||||||||||| ||||||| |||||||| |||| ||||| ||||||||||| | Sbjct 182 ACAATAGGGATCTGCAAGAGATAAAGGAATCATCCTTCTCTAAAGGAAGTGAGCAATATC 241 Query 267 GAGATGATGATGTGCACAAGATCGAGGAAGTTGTTGATGATACTGATGGAGCCCTTCAGG 326 ||| ||||| | || | || || ||| | |||| || ||| |||| ||| Sbjct 242 GAGTTGATG--GAGCCCTTGA---AGAAAG-T-TTGA--ATTTTGA-GGAG-----AAGG 286 Query 327 AACAAGAATCTGAGGTTCAGAGACTTTTGGAAGCAGAGAAGAGAAGATTGTTAGCTGAAA 386 ||||||||||||| | ||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 287 AACAAGAATCTGAAGCTCAGAGACTATTGGAAGCAGAGAAGAGAAGATTGCTGGCTGAAA 346 Query 387 TCGAACTTGGGTCAATCTTTAGGAAGAGGGTTGATGTGGATACGTTGCCTAAGATCGAAG 446 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 347 TCGAACTTGGGTCAATCTTTAGGAAGAGTGTTGATGTGGATACGTTGCCTAAGATCGAAG 406 Query 447 AGACCATGGATAGTTATGTTGATAAGA--GATCTGTGAAGATTGATGATACTGCGTTGGT 504 |||| ||||||| | |||||||||||| || | || | ||||| ||||||||||||| Sbjct 407 AGACGATGGATAATGATGTTGATAAGATTGAA-T-TG--G-TTGATCATACTGCGTTGGT 461 Query 505 TGATGTTGTT-ACTCATCCTAAGAGAACAGGAAGTGCACAGAATGATAAGGATGGACCAA 563 |||||||||| | ||||||||||||| |||| | ||| || ||||| |||||| ||| | Sbjct 462 TGATGTTGTTCA-TCATCCTAAGAGACCAGGGACTGCTCAAAATGAGAAGGATACACCTA 520 Query 564 GAAAGCATAAGAAACTTGGAGAGAAGA 590 |||||| ||||||| ||||||| |||| Sbjct 521 GAAAGCTTAAGAAAATTGGAGATAAGA 547 Score = 252 bits (136), Expect = 1e-65 Identities = 165/179 (92%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 1 CCGCCTCATGACGACGAACTCTGATTCCGGCCACTGCATTCCGGCAAAAACCTCAGTTTC 60 ||||||||||| ||| ||||| ||||||| |||||| | |||||| ||||||||| |||| Sbjct 3 CCGCCTCATGATGACAAACTCCGATTCCGACCACTGTACTCCGGCGAAAACCTCAATTTC 62 Query 61 TCGGGATGGATTTGAAAAAGAGAGCGAC-TTAACGAAGCAACTGAACTCTGAGATAGATC 119 | |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 63 TGGGGATGGATTAGAAAAAGAGAGCGACTTTAA-GAAGCAACTGAACTCTGAGATAGATC 121 Query 120 CACAAGCTTCTTCCTCGCAAACCGATGCGATAACTATGGAAGATGGAGCCGTCTCTGTA 178 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 122 CACAAGCTTCTTCCTCGCAAAACGATGCAATAACTATGGAAGATGGAGCCGTCTCTGTA 180 > AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | chr2:17701662-17704618 FORWARD LENGTH=1986 Length=1986 Score = 254 bits (137), Expect = 3e-66 Identities = 189/214 (88%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 941 ACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAA 1000 ||||| |||||||| |||||||||||||||||||| |||||||||| || ||||||||| Sbjct 1339 ACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCTGTGGATGGAGAA 1398 Query 1001 CCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTCGAATATTTAAGACGAGTCAGGTG 1059 ||||| ||| | | |||||||||||||||| ||| | ||||||||||||||||||||||| Sbjct 1399 CCTGA-TTTCGATTCTGGACCACCAGAAGACGGGATTGAATATTTAAGACGAGTCAGGTG 1457 Query 1060 GGAGGCTAAGGGAATTCCGAATGTTAGAGTAGCCAAGATA-GATGAAAGCAAGTACATAA 1118 |||||||||| ||||||| ||||| | |||||||||| || | || ||||||||||| | Sbjct 1458 GGAGGCTAAGCGAATTCCAAATGTAAAAGTAGCCAAGGTAAG-TGGAAGCAAGTACAGAG 1516 Query 1119 AGAAAGAGCAAAGTGTTTATATGCCACTAATTCC 1152 ||||||||||||||||||| ||||||| |||||| Sbjct 1517 AGAAAGAGCAAAGTGTTTACATGCCACAAATTCC 1550 Score = 69.4 bits (37), Expect = 1e-10 Identities = 50/56 (89%), Gaps = 2/56 (4%) Strand=Plus/Plus Query 1168 CCCAGAGTACCT-CTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1222 ||||||| |||| | ||| ||||||||||||||||||||||||||||||||||| Sbjct 1549 CCCAGAGCACCTGC-AACCGGTGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86846942850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5