BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474711
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20... 1631 0.0
AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 254 3e-66
> AT1G54380.1 | Symbols: | spliceosome protein-related | chr1:20297965-20300908
REVERSE LENGTH=1879
Length=1879
Score = 1631 bits (883), Expect = 0.0
Identities = 1023/1090 (94%), Gaps = 11/1090 (1%)
Strand=Plus/Plus
Query 666 GTGGAGGAGAAAACAATGGGAAGCAGTTTAGGAGAGTGTACACTAGGATCCAATTGGAGT 725
|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 566 GTGGAGTAGAAAACAATGGGAAGCAGTTTAGGAGATTGTACACTAGGAAACAATTGGAGT 625
Query 726 CAATGAGGTTTGCCCACACTGTGAATCAGAAGAAACTGTGGAGTGAGATGTATGCTAGGA 785
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct 626 CAATGAGGTTTGCCCACATTGTGAATCAGAAGAACCTGTGGAGTGAGATGTATTCTAGGA 685
Query 786 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATCTGAAGAATTACAAGAATT 845
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 686 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATGTGAAGAATTACAAGAGTT 745
Query 846 CAAAGTCTAATCGGGTTCGTGGGCAAACCGAGAGTTGCATTGGAGAAAATTTGGGTACTG 905
||||||||||||| |||||||||| ||| |||||| ||| || |||||||||||| ||||
Sbjct 746 CAAAGTCTAATCGTGTTCGTGGGCGAACGGAGAGTGGCAATGAAGAAAATTTGGGGACTG 805
Query 906 ATGAAGGAGCGGAGGACCTAACTCCTGAAGACTACACTGACGATAATGATGATTACAATA 965
| |||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 806 AAGAAGGAACGGAGG-----AC-CCTGAAGACTACACTGACGATAATGATGATTACAATA 859
Query 966 GCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 1025
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 860 GCATTTTGAGACCTGCGTTTGAAGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 919
Query 1026 AAGATGGGCTCGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTTA 1085
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 920 AAGATGGGCTTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTAA 979
Query 1086 GAGTAGCCAAGATAGATGAAAGCAAGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1145
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 980 GAGTAGCCAAGATAGATGAAAGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1039
Query 1146 TAATTCCTGAAATCCCCAAATGCCCAGAGTACCTCTTACCCATGAAGGAATGGGAGGACT 1205
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1040 TAATTCCTGAAATCCCCAAATGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACT 1099
Query 1206 CGTTGCTTTCCGACTTCATTCACCTTCGCCAGACTCTATCGCAAAGTGCCAACAGCTGTG 1265
||||||||| ||||| | |||||||||||||||||| | |||||||||||||||||||
Sbjct 1100 CGTTGCTTTTGGACTTTGTACACCTTCGCCAGACTCTAACACAAAGTGCCAACAGCTGTG 1159
Query 1266 AGGATGAGATAGTATCAAGTCAGTGTGTAGAAGATTTACTTGTGGAGATATTCAATAAGC 1325
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1160 AGGATGAGATAATATCAAGTCAGTGTGTAGAAGATTTGCTTGTGGAGATGTTCAATAAGC 1219
Query 1326 ATCTTCACACCGAGAAGGATGAGTCATTTGGTGGA-GTGGTATCAGACATACAAGGAATG 1384
|||| ||||| ||| |||||||||| |||||| || |||||| |||||||||||||||||
Sbjct 1220 ATCTCCACACAGAGGAGGATGAGTCTTTTGGT-GAGGTGGTAACAGACATACAAGGAATG 1278
Query 1385 GACTCGGTGACGCGGGTGTCGAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGATT 1444
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1279 GACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGAGC 1338
Query 1445 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1398
Query 1505 TTGGATGCTGATACTTGTGCTTGTCTCAGGGGTCTTCTGAGGAAGTGTGCAAGTGTTCGT 1564
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1399 TTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGTGCTAGTGTTCGT 1458
Query 1565 GCAGAGAAATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATTCTCATC 1624
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1459 GCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATGCTCATC 1518
Query 1625 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTCATAAGTGACGAAGAGAGTCGAC 1684
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 1519 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTAATAAGTGAAGAAGAGAGTGGAC 1578
Query 1685 AGGTCATGCTCTTACTTTTCTCTCATATGTGCTTTTGAGTATATGAACATGAGCTTTAAT 1744
| | ||||| |||||||||||||||||||||||||||| | | | | |||||||||||||
Sbjct 1579 ATGACATGCCCTTACTTTTCTCTCATATGTGCTTTTGAATCT-T-A-CATGAGCTTTAAT 1635
Query 1745 GCCATTTTTT 1754
||||||||||
Sbjct 1636 GCCATTTTTT 1645
Score = 344 bits (186), Expect = 2e-93
Identities = 324/387 (84%), Gaps = 24/387 (6%)
Strand=Plus/Plus
Query 207 ACAATAGGGATCTGCAACAGATAAAAGAATCATCTTTCTTTAAAGAAAGTGAGCAATTTG 266
||||||||||||||||| ||||||| |||||||| |||| ||||| ||||||||||| |
Sbjct 182 ACAATAGGGATCTGCAAGAGATAAAGGAATCATCCTTCTCTAAAGGAAGTGAGCAATATC 241
Query 267 GAGATGATGATGTGCACAAGATCGAGGAAGTTGTTGATGATACTGATGGAGCCCTTCAGG 326
||| ||||| | || | || || ||| | |||| || ||| |||| |||
Sbjct 242 GAGTTGATG--GAGCCCTTGA---AGAAAG-T-TTGA--ATTTTGA-GGAG-----AAGG 286
Query 327 AACAAGAATCTGAGGTTCAGAGACTTTTGGAAGCAGAGAAGAGAAGATTGTTAGCTGAAA 386
||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 287 AACAAGAATCTGAAGCTCAGAGACTATTGGAAGCAGAGAAGAGAAGATTGCTGGCTGAAA 346
Query 387 TCGAACTTGGGTCAATCTTTAGGAAGAGGGTTGATGTGGATACGTTGCCTAAGATCGAAG 446
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 347 TCGAACTTGGGTCAATCTTTAGGAAGAGTGTTGATGTGGATACGTTGCCTAAGATCGAAG 406
Query 447 AGACCATGGATAGTTATGTTGATAAGA--GATCTGTGAAGATTGATGATACTGCGTTGGT 504
|||| ||||||| | |||||||||||| || | || | ||||| |||||||||||||
Sbjct 407 AGACGATGGATAATGATGTTGATAAGATTGAA-T-TG--G-TTGATCATACTGCGTTGGT 461
Query 505 TGATGTTGTT-ACTCATCCTAAGAGAACAGGAAGTGCACAGAATGATAAGGATGGACCAA 563
|||||||||| | ||||||||||||| |||| | ||| || ||||| |||||| ||| |
Sbjct 462 TGATGTTGTTCA-TCATCCTAAGAGACCAGGGACTGCTCAAAATGAGAAGGATACACCTA 520
Query 564 GAAAGCATAAGAAACTTGGAGAGAAGA 590
|||||| ||||||| ||||||| ||||
Sbjct 521 GAAAGCTTAAGAAAATTGGAGATAAGA 547
Score = 252 bits (136), Expect = 1e-65
Identities = 165/179 (92%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 1 CCGCCTCATGACGACGAACTCTGATTCCGGCCACTGCATTCCGGCAAAAACCTCAGTTTC 60
||||||||||| ||| ||||| ||||||| |||||| | |||||| ||||||||| ||||
Sbjct 3 CCGCCTCATGATGACAAACTCCGATTCCGACCACTGTACTCCGGCGAAAACCTCAATTTC 62
Query 61 TCGGGATGGATTTGAAAAAGAGAGCGAC-TTAACGAAGCAACTGAACTCTGAGATAGATC 119
| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 63 TGGGGATGGATTAGAAAAAGAGAGCGACTTTAA-GAAGCAACTGAACTCTGAGATAGATC 121
Query 120 CACAAGCTTCTTCCTCGCAAACCGATGCGATAACTATGGAAGATGGAGCCGTCTCTGTA 178
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 122 CACAAGCTTCTTCCTCGCAAAACGATGCAATAACTATGGAAGATGGAGCCGTCTCTGTA 180
> AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: spliceosome assembly, nuclear mRNA splicing,
via spliceosome; LOCATED IN: cellular_component unknown;
CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting
protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana
protein match is: spliceosome protein-related (TAIR:AT1G54380.1);
Has 297 Blast hits to 270 proteins in 80 species: Archae
- 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants -
64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
| chr2:17701662-17704618 FORWARD LENGTH=1986
Length=1986
Score = 254 bits (137), Expect = 3e-66
Identities = 189/214 (88%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 941 ACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAA 1000
||||| |||||||| |||||||||||||||||||| |||||||||| || |||||||||
Sbjct 1339 ACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCTGTGGATGGAGAA 1398
Query 1001 CCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTCGAATATTTAAGACGAGTCAGGTG 1059
||||| ||| | | |||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 1399 CCTGA-TTTCGATTCTGGACCACCAGAAGACGGGATTGAATATTTAAGACGAGTCAGGTG 1457
Query 1060 GGAGGCTAAGGGAATTCCGAATGTTAGAGTAGCCAAGATA-GATGAAAGCAAGTACATAA 1118
|||||||||| ||||||| ||||| | |||||||||| || | || ||||||||||| |
Sbjct 1458 GGAGGCTAAGCGAATTCCAAATGTAAAAGTAGCCAAGGTAAG-TGGAAGCAAGTACAGAG 1516
Query 1119 AGAAAGAGCAAAGTGTTTATATGCCACTAATTCC 1152
||||||||||||||||||| ||||||| ||||||
Sbjct 1517 AGAAAGAGCAAAGTGTTTACATGCCACAAATTCC 1550
Score = 69.4 bits (37), Expect = 1e-10
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1168 CCCAGAGTACCT-CTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1222
||||||| |||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1549 CCCAGAGCACCTGC-AACCGGTGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86846942850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5