BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474712
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23840.1 | Symbols: | HNH endonuclease | chr2:10153797-1015... 1397 0.0
> AT2G23840.1 | Symbols: | HNH endonuclease | chr2:10153797-10155647
REVERSE LENGTH=1087
Length=1087
Score = 1397 bits (756), Expect = 0.0
Identities = 949/1038 (91%), Gaps = 30/1038 (3%)
Strand=Plus/Plus
Query 1 TTGGATCACCCTAA---CTTC--TTC--TTCAATCAAATGGCACATTTCTCTTCGAGACT 53
|||||||||||||| |||| ||| |||||||||||||||||||||||| | |||||
Sbjct 11 TTGGATCACCCTAACTTCTTCGTTTCGTTTCAATCAAATGGCACATTTCTCTGCTAGACT 70
Query 54 TAAGCTTCTCTCAAGCAACGATGGATTGTCATTTGGTGTAGATTCCAGAGACCAATTGCG 113
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 71 TAAGCTTCTCTCAAGCAACGATGGATTATCTTTTGGTGTAGATTCGAGAGACCAATTTCG 130
Query 114 GCAAAGCCTTTACATGGCCGGTGGTGGAACTCCTTTGGTTCCAATACGCAGGAGCCGATT 173
||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 131 GCAGAGCCTTTACATGGCCGGTGGTGGATCTCCTTTGGTTCCAATACGCATGAGCCGACT 190
Query 174 AAAGTTTTGTGCAAGAATTTTCTCGTCTTACTCTTTTCCCTATAAGAGAAAGAAAATTAG 233
|||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 191 AAAGTTTTGTGCTAGAATCTTCTCATCTTACTCTTTTCCTTATAAGAGAAAGAAAATTAG 250
Query 234 GGATTTCGATAACACCGAGAAAAATCTTGGTATTGATGAAGACAACGATGAATGGGATTT 293
|||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 251 GGATCTCGATAACACCGAGAAAAATCTTGATATTGACGAAGACAACGATGAGTGGGATTT 310
Query 294 TGATGGAGACGATGATGGTTTAGAGACTGATG---ATCTTTCTTGCTTCAGAGGCTTAGT 350
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 311 TGATGGAGACGATGATGGTTTAGAGACTGATGATCATCTTTCTTGCTTCAGAGGCTTGGT 370
Query 351 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGTCTCGA 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 371 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGCCTCGA 430
Query 411 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACTGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACGGG 490
Query 471 TTCATTCTATATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 530
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TTCGTTCTACATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 550
Query 531 AAGAGTGAAAAACTCACTAAGTCGTAAAAATATATTACTGCGAGACGGTTATACTTGTCA 590
|||||||||||||||||| || ||||||||||| ||||| ||||||| ||||||||||||
Sbjct 551 AAGAGTGAAAAACTCACTTAGCCGTAAAAATATTTTACTACGAGACGATTATACTTGTCA 610
Query 591 ATATTGTTCTTCCCGTGAAAACTTGACCATTGATCATGTTATGCCAGTTTCTCGAGGTGG 650
|||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 611 ATATTGTTCTTCGCGAGAAAATTTGACCATTGATCATGTTATGCCGGTTTCTCGAGGTGG 670
Query 651 AGAATGGAGCT-GGCAAAACCTAGTAGCTGCATGTTCAAGATGTAACTCAAAGAAAGGTC 709
|||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 671 AGAATGGA-CTTGGCAAAACCTAGTAGCTGCATGTTCAAGATGCAACTCAAGGAAAGGAC 729
Query 710 AGAAGACAGCAGAAGAAGCACACATGAAGTTACTCAAGGTCCCGAAGGAACCAAAAGACT 769
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 730 AGAAGACAGCAGACGAAGCACACATGAAGTTACTTAAGGTCCCAAAGGAACCAAAAGACT 789
Query 770 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCAAATAAGG 829
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 790 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCGAATAAGG 849
Query 830 GAATGCCAGAAGAATGGCGTCAGTATCTGGCGAAACCTTTAACCGAGCCATAGCAGTTTA 889
| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||
Sbjct 850 GCATGCCAGAAGAATGGCGTCAGTATCTGGCAAAACCTTTATCCGAGACATAGTAGTTTC 909
Query 890 TCTCAGGAATCAAGGAGCAAAAGTGG-TCCGTCCAGGCCATC-TCGTAAATATAGAA-CG 946
||||||||||||||||||||||| || | ||| |||| || | ||||| | | || ||
Sbjct 910 TCTCAGGAATCAAGGAGCAAAAG-GGATAGGTCT-GGCCTTCCTTGTAAACACAAAATCG 967
Query 947 GTGGC-TCGATTGCATATGTTTGTC--A-T-G-GACTTGATTAGAGTACGCACTCAAATG 1000
|||| ||| | || | ||| || | | | |||||| || |||| | |||||||||
Sbjct 968 -TGGCCTCG-T---ATCT-TTTCTCCCAATCGTGACTTGTTTTGAGTTGG-ACTCAAATG 1020
Query 1001 TATATAATACGTAAATAT 1018
||||||||||||||||||
Sbjct 1021 TATATAATACGTAAATAT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5