BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474714
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26230.1 | Symbols: | uricase / urate oxidase / nodulin 35,... 1517 0.0
AT2G23850.1 | Symbols: | pseudogene, similar to Uricase II (EC... 252 5e-66
> AT2G26230.1 | Symbols: | uricase / urate oxidase / nodulin 35,
putative | chr2:11164575-11167195 FORWARD LENGTH=1354
Length=1354
Score = 1517 bits (821), Expect = 0.0
Identities = 905/946 (96%), Gaps = 4/946 (0%)
Strand=Plus/Plus
Query 18 GTTACTTAGAATGGCACAAGAAGCTGATGGGATCAGATTGGAGCAAAGACATGGGAAGGC 77
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 188 GTTACTTAGAATGGCACAAGAAGCCGATGGGATCAGATTGGACCAAAGACATGGGAAGGC 247
Query 78 TCGTGTGAGAGTTGGAAGAGTTTGGCGTCATGCTCATGATGGATCTCATCACTTTGTTGA 137
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCGAGTGAGAGTTGGAAGAGTTTGGCGTCATGCTCATGATGGATCTCATCACTTTGTTGA 307
Query 138 ATGGAATGTTAGCATCAGTCTTCTCTCTCACTGTCTCTCTTCTTACTATCGTGATGATAA 197
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 308 ATGGAATGTTAGCATCAGTCTTCTCTCTCACTGTCTCTCTTCTTACCGTCTTGATGATAA 367
Query 198 CTCTGATATTGTCGCTACCGATACCATGAAAAACACTGTTTATGTGAAAGCCAAGGAATG 257
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 368 CTCTGATATTGTCGCCACAGATACCATTAAAAACACTGTTTATGTGAAAGCCAAGGAATG 427
Query 258 TGGAGATCGACTCTCGGTGGAAGAATTTGCCATACTTATTGGGAAACACTTTTGCTCATT 317
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 428 TGGAGATCGGCTCTCGGTGGAGGAATTTGCCATACTTATTGGGAAACACTTTTGCTCATT 487
Query 318 TTATCCACAGGTTTTTACTGCTATCGTGAGTATCATTGAGAAACCCTGGGAGCGTGTATC 377
|||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 488 TTATCCACAGGTATTTACTGCTATCGTGAATATCATTGAGAAGCCCTGGGAGCGTGTCTC 547
Query 378 CATTGATGGAAAACCACATTTACATGGTTTCAAGCTTGGATCCGAGAACCATACTGCAGA 437
||| |||||||||||||||||||||||||| |||||||| || |||||||||||| ||||
Sbjct 548 CATCGATGGAAAACCACATTTACATGGTTTTAAGCTTGGGTCAGAGAACCATACTACAGA 607
Query 438 GGCAAGAGTAGAAAAGTCTGGTGCACTAAACTTAACTTCTGGTATTGGAGGACTAGCTCT 497
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 608 GGCAAGAGTAGAAAAGTCTGGTGCATTAAACTTAACTTCCGGTATTGGAGGACTAGCTCT 667
Query 498 ACTGAAGACAACCCAGTCAGGATTTGAGAGGTTTGTCAGAGACAAATACACCGTTCTGCC 557
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 668 ACTGAAGACAACCCAGTCAGGATTTGAGAGGTTTGTCAGAGACAAATACACCATTCTGCC 727
Query 558 TGAAACTGGCGAGAGAATGCTGGCCACAGAGGTTAATGCATCTTGGAGGTACTCGTATGA 617
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TGAAACTCGTGAGCGAATGCTGGCCACAGAGGTTAATGCATCTTGGAGGTACTCGTATGA 787
Query 618 GTCAGTTGCAAGCATCCCAACAAAAGGACTCTACTTCA-CTGAGAAGTTCATGGACGTAA 676
||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||| |
Sbjct 788 GTCAGTTGCAAGCATTCCAACAAAAGGACTCTACTTTAGC-GAGAAGTTCATGGACGTTA 846
Query 677 AGAAAGTTCTGATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTATAGCCCTTCTG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGAAAGTTCTGATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTATAGCCCTTCTG 906
Query 737 TGCAACGCACTCTCTATCTCATGGGAAGCGCCGTACTGAAAAGGTTCGCTGATGTATCAT 796
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TCCAACGCACTCTCTACCTCATGGGAAGCGCCGTACTGAAAAGGTTCGCTGATGTATCAT 966
Query 797 CAATTCACCTAAAAATGCCAAATATTCACTTTCTACCTGTAAATCTATCAACCAAGGAAA 856
| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct 967 CGATTCACCTAAAAATGCCAAATATTCATTTTCTACCAGTAAATCTTTCAACGAAGGAAA 1026
Query 857 ACCCTTCAATGGTGAAGTTTAAAGATGATGTGTACCTGCCAACCGATGAACCTCATGGAT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 ACCCTTCAATGGTGAAGTTTAAAGATGATGTGTACCTGCCAACCGATGAACCTCATGGAT 1086
Query 917 CTATAGAAGCAAC-CGTAAGCCGCATAACCTCGAAACTATGAGGTT 961
||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 1087 CTATAGAAGCAACTC-TAAGCCGTATAACCTCGAAACTATGAGGTT 1131
> AT2G23850.1 | Symbols: | pseudogene, similar to Uricase II (EC
1.7.3.3) (Urate oxidase) (Nodule specific uricase). (Kidney
bean, French bean), blastp match of 54% identity and 2.0e-27
P-value to SP|P53763|URIC_PHAVU Uricase II (EC 1.7.3.3)
(Urate oxidase) (Nodule specific uricase). (Kidney bean, French
bean) {Phaseolus vulgaris} | chr2:10156201-10156896 REVERSE
LENGTH=696
Length=696
Score = 252 bits (136), Expect = 5e-66
Identities = 164/177 (93%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 607 TACTCGTATGAGTCAGTTGCAAGCATCCCAACAAAAGGACTCTACTTCA-CTGAGAAGTT 665
||||||| ||||||||||||||||||||||||||| |||||||| |||| | ||||||||
Sbjct 7 TACTCGTTTGAGTCAGTTGCAAGCATCCCAACAAAGGGACTCTATTTCAGC-GAGAAGTT 65
Query 666 CATGGACGTAAAGAAAGTTCTGATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTA 725
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 66 CATAGACGTAAAGAAAGTCCTAATGGATACTTTCTTTGGTCCACCAGAAACTGGTGTGTA 125
Query 726 TAGCCCTTCTGTGCAACGCACTCTCTATC-TCATGGGAAGCGCCGTACTGAAAAGGT 781
||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 126 CAGCTCTTCTGTCCAACGCACTCTCT-TCCTCATGGGAAGCGCCGTACTGAAAAGGT 181
Score = 137 bits (74), Expect = 2e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 872 AGTTTAAAGATGATGTGTACCTGCC-AACCGATGAACCTCATGGATCTATAGAAGCAACC 930
||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 525 AGTTTAAAGATGATGTGTACCTGCCAAACCAATGAACCTCACGGATCTATAGAAGCAACT 584
Query 931 GTAAGCCGCATAACCTCGAAACTATGAGGT 960
|||||||||||||||||||||||||||||
Sbjct 585 TTAAGCCGCATAACCTCGAAACTATGAGGT 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5