BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474716

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54410.1 | Symbols:  | dehydrin family protein | chr1:203097...   865    0.0  


> AT1G54410.1 | Symbols:  | dehydrin family protein | chr1:20309775-20310767 
REVERSE LENGTH=728
Length=728

 Score =  865 bits (468),  Expect = 0.0
 Identities = 537/571 (94%), Gaps = 2/571 (0%)
 Strand=Plus/Plus

Query  51   aaaagagagatttaatacaaaagaaagagaaaaaaaG-ACGATATGGCAGGACTCGTCAA  109
            ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||
Sbjct  125  AAAAGAGAGATTTAATACAAAAGAAAGAG-AAAAAAGAAAGATATGGCAGGACTCATCAA  183

Query  110  AAAGATCGGAGATGCACTCAACATGGGAGGAGGCAACAAGGAAGGCGAGCACAAGAAGGA  169
             ||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct  184  CAAGATCGGAGACGCACTCCACATTGGAGGAGGCAACAAGGAAGGTGAGCACAAGAAGGA  243

Query  170  AGAGGAACAAAAGAAGCACGTCGACGAGAACAAGAGTGGTGAGCGCAAAGAAGGTATTGT  229
            ||||||||| ||||| ||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct  244  AGAGGAACACAAGAAACACGTTGACGAGCACAAGAGTGGTGAGCACAAAGAAGGTATTGT  303

Query  230  TGACAAGATCAAAGACAAGATCGACGGTGGTGAAGGCAAAAGCAACGACGGAGAAGGCAA  289
            |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct  304  TGACAAGATCAAAGACAAGATCCACGGTGGTGAAGGTAAAAGCCACGACGGAGAAGGCAA  363

Query  290  AAGTCACGATGGTGagaagaaaaagaagaaggacaagaaggagaagaaaCATCATGATGA  349
            ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  AAGCCACGACGGTGAGAAGAAAAAGAAGAAGGACAAGAAGGAGAAGAAACATCATGATGA  423

Query  350  TGGTCACCACAGCAGCAGCAGTGACAGCGACAGCGATTAAGGTGAAGAAGTGAGGAGGAT  409
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  424  TGGTCACCACAGCAGCAGCAGTGACAGCGACAGCGATTAAGGTGAGGAAGTGAGGAGGAT  483

Query  410  CGCTTAAATAAAACAGATCTTGTTCTGACTATTATTAATTAATGTTGTTGTATGTTCCTA  469
            ||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||
Sbjct  484  CGCTTGAATAAAACAGATCTGGTTCTGGCTATTATTAATTAATGTTGCTGTATGTTCTTA  543

Query  470  TCCTCTTAGAGAGAGGTTAAAGACAGGAGAACCGTGCATCTATCTTTGTTTGTTATGTTT  529
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  544  TCATCTTAGAGAGAGGTTAAAGACAGGAGAACCGTGCATCTATCTTTGTTTGTTATGTTT  603

Query  530  CTGTTTTCTTGTCATGAAAATTATGTTCATGTATCTTATCTAAATCTAAATTAATAAATC  589
            ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| | 
Sbjct  604  CTGTTTTCTTGTCATGAAAATTATGCTCATGTATCTTATCTAAATCAAAAATAATAATTT  663

Query  590  CATGAATCCTAACTTGTAAGACTTTTTATTT  620
             ||||||| ||||||||||||||| ||||||
Sbjct  664  GATGAATCATAACTTGTAAGACTTGTTATTT  694



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29889317465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5