BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474719
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54445.1 | Symbols: | Protein of unknown function (PD694200... 333 4e-91
> AT1G54445.1 | Symbols: | Protein of unknown function (PD694200)
| chr1:20332428-20332862 FORWARD LENGTH=237
Length=237
Score = 333 bits (180), Expect = 4e-91
Identities = 219/238 (92%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 ATGACAACAAAGATCTTTTCATATGTTTTATTACATTCATTGATGATGTTTGCTCTCATC 60
||||| || ||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1 ATGACTACGAAGATGTTTTCATATGTTTTGTTACATTCATTGATGATGTTTGCTATCATC 60
Query 61 CTTTCTTCCATGGGCTCACCAGGGAAATATTATGACTGTAAGCAAGACGGATGTATAACC 120
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTCTTCCATGGGTTCACCAGAAAAATATTATGACTGTAAGCAAGACGGATGTATAACC 120
Query 121 ACACCACCATGCTGGAGAAAATGCTTGTCTATGGGATATCCC-AAAGGAGGGGAATGTCG 179
|||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 121 ACACCACCATGCTGGAGAAAATGCGTGTCTATGGGATA-CCCGAAAGGAGGAGAATGTCG 179
Query 180 AACATATAGTTATGGTGGTGTTTGTTGCTGTGAACTCAGTTCTAAGCCTCCTAACTAA 237
|| ||| |||||||| ||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct 180 AATATACAGTTATGGCGGTGTTTGTTGTTGTGACCTCACTTCTAAGCCTCCTAATTAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5