BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474725
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54500.1 | Symbols: | Rubredoxin-like superfamily protein |... 1075 0.0
> AT1G54500.1 | Symbols: | Rubredoxin-like superfamily protein
| chr1:20356954-20357788 REVERSE LENGTH=835
Length=835
Score = 1075 bits (582), Expect = 0.0
Identities = 667/709 (94%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 1 ACAATGCTTTTCAAAAATCTTATCCAAGCATAAGTCTCCTTCGTACCTCTCGTCTCCGAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 1 ACAATGCTTTTCAAAAATCTTATCCAAGCATAAGTCTCCTTGGTACCTCTCCTCTCCAAT 60
Query 61 GGATCCTTCTTCTCTAACAATGACCAAACTCAGAAATTATAAGAAGTAAAGACAATCATG 120
||||| | | ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 61 GGATCATCCGTCTCTAACAATGACCAAACTCCGAAATTATAAGAAGTAAAGACAACCATG 120
Query 121 GCGAGTGCTACCTTCTCCTTCTG-CCCTCTCTCTCAATCCCATTCCCATTATTCTCTCAT 179
||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||
Sbjct 121 GCGAGTGCTACCTTCTCCTTCTGTCCC-CTCTCTCAATCCCATCCCCATTCTTCTCTAAT 179
Query 180 CAAACCGACGCCGTTTCTCAGATATGGCAAGAAACTACACCATCTCCACCACCACCTCTT 239
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 180 CAAACCGACACCGTTTCTCAGATATGGCAAGAAACTACACCATCTTCACCACCACATCTT 239
Query 240 CATCACCATCTCTTACCCAACTCAACATTCTCGTTACCTCGCTGTCTCAAGAGACGATGC 299
||||||||||||||||||| |||| |||||||| ||| | || || ||||||||||||||
Sbjct 240 CATCACCATCTCTTACCCATCTCACCATTCTCGCTACTTGGCCGTTTCAAGAGACGATGC 299
Query 300 CACGACGCCTCTTGCTTCATCCGACCAAACCCAAGAAACAGAGACCAAAGAAGTTGAAGA 359
| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 300 CGCGACGCCTCTTTCTTCTTCCGACCAAACCCAAGAGACAGAGACCAAAGAAGTGGAAGA 359
Query 360 TACTATAGAGAAACGAAGAATGGAGGAGAAGTTTGCAGTTCTAAACACTGGGATCTATGA 419
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 360 CACTATAGAGAAACGAAGAATGGAGGAGAAGTTTGCTGTTCTAAACACTGGAATCTATGA 419
Query 420 GTGTAGATCGTGTGGTTACAAGTACGATGAATCAGCAGGTGACCCATCGTACCCGATTCC 479
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GTGTAGATCATGTGGTTACAAGTACGATGAATCAGCGGGTGACCCATCGTACCCGATTCC 479
Query 480 ACCGGGTTTTCAGTTTGATAAGTTGCCTGAAGATTGGAGATGTCCAACTTGTGGAGCTGC 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACCGGGTTTTCAGTTTGATAAGTTGCCTGAAGATTGGAGATGTCCTACTTGTGGAGCTGC 539
Query 540 TCAGAGTTTCTTTGAGAGTAAAATGGTTGAGATTGCTGGTTTTGCTCAGAATCAGCAATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGAGTTTCTTTGAGAGTAAAATGGTTGAGATTGCTGGTTTTGCTCAGAATCAGCAATA 599
Query 600 TGGACTTGGTGGTAATGCTCTTACTTCTGGTCAGAAGACTGGTTTAATCTTTGGCTCTCT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGGACTTGGTGGTAATGCTCTTACCTCTGGTCAGAAGACTGGTTTAATCTTTGGCTCTCT 659
Query 660 CTTACTCTTCTTCATGCtttttttGAGCGGCTATTTCATCCAATAATTA 708
||||||||||| |||||||||||| ||||||||||| |||| ||||
Sbjct 660 TTTACTCTTCTTTGCGCTTTTTTTGAGTGGCTATTTCATTCAATGATTA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5