BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474728
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2015 0.0
> AT1G54520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1517 (InterPro:IPR010903);
Has 276 Blast hits to 275 proteins in 83 species: Archae
- 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
| chr1:20363448-20366061 FORWARD LENGTH=1480
Length=1480
Score = 2015 bits (1091), Expect = 0.0
Identities = 1232/1299 (95%), Gaps = 14/1299 (1%)
Strand=Plus/Plus
Query 23 TCACCACATAAACCCTAGCGATCGATTTCTCCAGAAATCAACCAACAATCGTCCATGGCG 82
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 64 TCACCACATAAACCCTAGCGATCGATTTCTCCAGAAATCAACCAACAATCGTTCATGGCG 123
Query 83 TCTTCTTCTACCTTTCTGGAATTAACTCCATTTCAATGGAATCAACCTCTTCCATACATG 142
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 124 TCTTCTTCCACCTTTCTGGAATTAACTCCATTTCAATGGAATCAACCTCTCCCATACA-C 182
Query 143 A-ACCGACCCCATCATCGTAGTGTTCTTCTCTACGCCAAACCTCAACGGAGATCAAATTC 201
| | |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 183 ACAACGACCCCATCATCGTACTGTTCTTCTCTACTCCAAACCTCAAAGGAGATCAAATTC 242
Query 202 TATTCGTCTCCAAATCTCCGTCAAATACAATCAATC--GA-CGAATTCAGATTCAGATTT 258
||||||||||||||||||||||||||||| ||||| | | ||||||| |||||||
Sbjct 243 GATTCGTCTCCAAATCTCCGTCAAATACAAGCAATCAACATCTTCTTCAGATCCAGATTT 302
Query 259 GCGATCCAA-TTCGAATCCATTTGAACAAATCGCGATTCAGGTCAAGAAAGCGTTAGATT 317
| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 303 GAGATCCAATTTC-AATCCATTTGAACAAATCGCGATTCAGGTCAAAAAAGCGTTAGATT 361
Query 318 CGTTGAAGAAACCTGCTATAGCTGCGGTTTTGCTTGGTTTGCTTTTGTTCTATGATCCTA 377
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 362 CGTTGAAGAAACCTGCTATAGCTGCGGTTTTACTTGGTTTGCTTTTGTTCTATGATCCTA 421
Query 378 ATTCGGCTTTAGCTGCGTCTGGTGGTAGAATTGGTGGTAACTCCTTCTCGTCGAGGTCTC 437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 ATTCGGCTTTAGCTGCGTCTGGTGGTAGAATTGGTGGTAATTCCTTCTCGTCGAGGTCTC 481
Query 438 GAAGCTCTTCTTCTTCTTC-T--CAATCGTATTCTGTGCCGAGAACATCGAGTCCGAGCT 494
| ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 482 GGAGCTCTTCTTCTTCTTCTTCGCAATCGTATTCTGTGCCGAGAACATCGAATCCGAGCT 541
Query 495 TTTCGTACTCCGCTAGGACCGCTCCGTACTATGGACCGTCACCgttt-ggtggaggtttt 553
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 542 TTTCGTACTCTGCTAGGACCGCTCCGTACTATGGACCGTCACC-TTTCGGTGGGGGTTTT 600
Query 554 atgggtccggcggttggttttgggtttggtgggttttCGAGCTTCTCTTTGATTCTGGTT 613
|||| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 601 GTGGGCCCGGCGGTTGGTTTTGGGTTTGGTGGTTTTTCGAGCTTCTCCTTGATTTTGGTT 660
Query 614 GGTTTCGCTGCGTTTGTTTTGGTCTCTGGATTCCTCTCAGATCGGTCACAGGACGATAGC 673
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GGTTTCGCTGCGTTTGTTTTGGTCTCTGGATTCCTCTCAGATCGGTCACAGGATGATAGC 720
Query 674 ATTTTAACCGATACTCAGAAAACTAGCGTCATTAAGCTACAGGTGGGGTTGCTGGGTTTG 733
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 ATTTTAACAGATACTCAGAAAACTAGCGTCATTAAGCTACAGGTGGGGTTGCTTGGTTTG 780
Query 734 GGGAGGACTCTACAGCAAGATTTTAATCGTCTTGCTGAAAGTGCAGATACATCCACACCG 793
|||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 781 GGGAGGACACTACAACAAGATTTTAATCGTCTTGCTGAAAGTTCGGATACATCCACACCG 840
Query 794 GAGGGTCTGAGCTATGTGTTAACCGAGGCAACATTGGCTTTGCTGAGGCACCCGGACTAT 853
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 841 GAGGGTCTGAGCTATGTTTTAACCGAGGCAACATTAGCTTTGCTGAGACACCCTGATTAC 900
Query 854 TGCATCTCTTGTTATTCATCAGTGGATGTGAAGCCGAGTATAGAAAAAGGAGAGAAGCGA 913
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 TGCATCTCTTGTTATTCATCAGTGGATGTGAAGCCGAGTATAGAAAAGGGAGAGAAGCGA 960
Query 914 TTTAACCAACTCTCCATTGAAGAACGGGGAAAATTTGATGAGGAGACGCTTGTTAACGTG 973
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 961 TTTAATCAACTCTCCATTGAAGAACGAGGAAAATTTGATGAGGAGACACTTGTTAACGTG 1020
Query 974 AATAGCATAAAGAGACAAAGCTCGAAGA-TCAAGAAAGCTAGCGGTTTCAGCAATGAATA 1032
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1021 AATAGCATAAAGAGACAAAGCTCGAAGATTC-GGAAAGCTAGCGGTTTCAGCAATGAATA 1079
Query 1033 TATTGTGGTAACCATCTTGGTGGCTGCAGAGGGTATACATAAACTGCCGCCAATAAACGG 1092
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 TATTGTGGTAACCATCTTGATGGCTGCAGAGGGTATACATAAACTGCCACCAATAAACGG 1139
Query 1093 AACTACAGATCTGAAGGAAGCTTTACTGAAACTCGGGTCAATACCAAGAAACAAAATAAT 1152
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AACTACAGATCTGAAGGAAGCCTTACTGAAACTCGGGTCAATACCAAGAAACAAAATAAT 1199
Query 1153 GGCAGTAGAAGTACTATGGACACCGCAGAACGAGGCCGACGCATTGTCAGAAAGGGAACT 1212
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 GGCAGTAGAAGTACTATGGACACCGCAGAACGAAGCCGACGCATTGTCAGAAAGGGAACT 1259
Query 1213 ACTTGAAGATTACCCACTTTTGAGGCCATTGTAAATCATTGTCATAATACCAAATAGAAC 1272
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1260 ACTTGAAGATTACCCACTTTTGAGGCCTTTGTAAATCATTGTGATAATACCAAATAGAAC 1319
Query 1273 CAATCTCTTGTTAGACGGTACAGTTTCTTACTCTATAAA 1311
|||||||||||||||||||||||||||||||||| ||||
Sbjct 1320 CAATCTCTTGTTAGACGGTACAGTTTCTTACTCTGTAAA 1358
Score = 91.6 bits (49), Expect = 2e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1322 CTAAACCGGAAATGAAGGCAATTAAGAATCAAATTTGACACCATTAATGATG 1373
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1414 CTAAACCGGAAATGAAGGCAATTAAGAATCAAATTTGATACCATTAATGATG 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5