BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474732

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54575.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   462    1e-129


> AT1G54575.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20387060-20387710 
FORWARD LENGTH=651
Length=651

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 418/492 (85%), Gaps = 39/492 (8%)
 Strand=Plus/Plus

Query  143  ATGAAGGTAAAACGAAG-GGTAAGTACACGACTAAGAAGATCCCAAAATGGAAGCATAAT  201
            |||||||| || | |||  | |||||||| ||||||||||||||||||||||||||||||
Sbjct  156  ATGAAGGTGAATCAAAGCAG-AAGTACACAACTAAGAAGATCCCAAAATGGAAGCATAAT  214

Query  202  GATTCAGGGA-ACAAGATAGGTCAAAAGGAGAACAATGAACCACCAACTATGATTGTCGC  260
            ||||||| || | ||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct  215  GATTCAGAGAGA-AAGATAGGTCAAAAGCAAAACAATGAAACACCAACTATGATTGTCGC  273

Query  261  TGGTGGATGGGTCAGGCCAAATCGAGCCATGTGGGCTTCACCTCCAAA--CA---AGC-C  314
            ||||||||||||||||||||||||||||||||||||||||||||||||  |    ||| |
Sbjct  274  TGGTGGATGGGTCAGGCCAAATCGAGCCATGTGGGCTTCACCTCCAAATTCCTCGAGCTC  333

Query  315  -A--C-ACAACAATAATTAATTA-TTATTTGAGAGAAGCTAGTGGGAACATATCTGTGAA  369
             |  | |||| || ||| ||||| ||||| |||||||||| |||| ||||||| |  |||
Sbjct  334  CAAGCCACAA-AAGAAT-AATTAATTATT-GAGAGAAGCTGGTGGTAACATATATAAGAA  390

Query  370  CTCAAATTACAGGTTCAAGTTGGCGA-GTAGACAAATGTTGAGCAAGAACAAGGCCGGTG  428
            ||||||||| | ||||||||||| || |||||||| |||||||| ||||||||||| || 
Sbjct  391  CTCAAATTAAATGTTCAAGTTGG-GAAGTAGACAACTGTTGAGCGAGAACAAGGCCAGTC  449

Query  429  GTCTTTTGAAACATCCATTGAAA-CTCAGCCATGGAGCGTGTGGTGGCATATAT-T-TAT  485
            || ||   ||||||||||| ||| ||||||||||||| |||||||||||||||| | | |
Sbjct  450  GT-TTCA-AAACATCCATTAAAAACTCAGCCATGGAGGGTGTGGTGGCATATATATGTGT  507

Query  486  GT-G--TCTAAATGGGTGAATTTTATAAGTTTATTATGCGTAATACTGTAC--CATGGAA  540
            || |  |||| |||||||||||||||||||||||||   |||||| | |||  |||||||
Sbjct  508  GTAGACTCTAGATGGGTGAATTTTATAAGTTTATTACATGTAATA-T-TACATCATGGAA  565

Query  541  GTTGATATGT-TATATA------CTGTATATTACGAGCGTATGTAATATATAGAATTCAA  593
            |||||||||| ||||||      ||||||||| || || | |||||||||||||||||||
Sbjct  566  GTTGATATGTCTATATATATATACTGTATATTGCGTGCCTTTGTAATATATAGAATTCAA  625

Query  594  TAAAACCTATCT  605
            ||||||||||||
Sbjct  626  TAAAACCTATCT  637


 Score =  141 bits (76),  Expect = 8e-33
 Identities = 95/104 (91%), Gaps = 1/104 (1%)
 Strand=Plus/Plus

Query  16   GCTGACCGTGTAGTTGCTCGGGTAGAGAAGTCGGTCAATTTGGTTATCGGTCATAGACAA  75
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  68   GCTGATCGTGTAGTTGCTCGGGTAGAGAAGTCGGTCAATTTGGTTATAGGTCATAGGCAA  127

Query  76   ACACAAAGGCAGGCCAGTTCAACGGAGCATGAACGT-AATCAAA  118
            ||||||||||||||| | |||| |||| ||||| || |||||||
Sbjct  128  ACACAAAGGCAGGCCGGCTCAAGGGAGTATGAAGGTGAATCAAA  171



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29135805260


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5