BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474734
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54580.1 | Symbols: ACP2 | acyl carrier protein 2 | chr1:203... 863 0.0
AT1G54630.1 | Symbols: ACP3 | acyl carrier protein 3 | chr1:204... 791 0.0
> AT1G54580.1 | Symbols: ACP2 | acyl carrier protein 2 | chr1:20389347-20391015
FORWARD LENGTH=881
Length=881
Score = 863 bits (467), Expect = 0.0
Identities = 664/750 (89%), Gaps = 49/750 (7%)
Strand=Plus/Plus
Query 57 tttttGACTATAAAAACTCTCCCACTTGCTTCTTCACTCTCACTG-TGC-C--CTC-ACA 111
||| ||||||||||| |||||||||||| |||||||||||||||| | | | ||| |
Sbjct 113 TTTGTGACTATAAAACCTCTCCCACTTGGTTCTTCACTCTCACTGTTTCTCATCTCTTCG 172
Query 112 TC-TCT-----T-CGTC--T-T--CTCCGATCTCTCTACGATTCATTC-TTCAATGGCTT 158
|| ||| | | || | | |||||||||||||||||||||||| ||| |||||||
Sbjct 173 TCTTCTCCGCCTCCTTCAATCTCACTCCGATCTCTCTACGATTCATTCGTTCTATGGCTT 232
Query 159 CCATTGCTGCTTCTTCTTCTACTTACCTACAAGCTCGTCCTCGCCAACTGGCGATTGCGG 218
|||||||||||||| |||||| || ||| |||||||||||||||||||||||||| ||||
Sbjct 233 CCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCGATCGCGG 292
Query 219 CTAATCAAGTTAGATGCTTTAGCTATGGAAGAAGAAGCCA-TCTTTCTTTTAATCTTCGC 277
||| |||||||| | |||||||| ||||||||||||| || ||||||||||||||| |||
Sbjct 293 CTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAG-CAGTCTTTCTTTTAATCTCCGC 351
Query 278 CAGCTTCCTACCCGCTTGAGC-GTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGT 336
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 352 CAGCTTCCTACCCGCTTGA-CTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGT 410
Query 337 GTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACCGCTGCCAC 396
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 GTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCAC 470
Query 397 CAAATTTGCTGCACTTGGTGCTGATTCTCTTGATACGGTGGAGATTGTGATGGGACTAGA 456
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 471 CAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGGGACTAGA 530
Query 457 GGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCTACAGTTGAGCA 516
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 GGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTTGAGCA 590
Query 517 AGCAGCTGAGCTCATTGAGGAGCTCTTGTTGGAAAAGGCAAAGTAGACTATCGTTTTATT 576
|||||||| ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||
Sbjct 591 AGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAGAATATC-TTT-ATT 648
Query 577 ACATTAGCAAAAA--AC------CAAA-CC-A--CTATCT-TCTTATTGTTTGGTTAGCT 623
||||||||||||| | |||| || | | | || ||||||||||| |||||||
Sbjct 649 ACATTAGCAAAAACGAAAAAAATCAAAACCCAAACCA-CTATCTTATTGTTTCGTTAGCT 707
Query 624 AGAGAGCAATTGTGTCTGTTGA--GATTT-ATGCTATATTTTGGGAAAATTATTACAAGG 680
|||||||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||
Sbjct 708 AGAGAGCAATTGTGTCTGTTGAAAGATTTTATG-T-TATTTTGGGGAAATTATTACAAGG 765
Query 681 CTTGTATTTGACAT--ATCTTTCTTCTAAAACATTTTACTTTCACCCTTCATAAAACTCT 738
||||||| |||| | |||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 766 CTTGTATCTGACTTTTATCTTTCTTCTAAAACATTTTACTTTCAGCCTTCATCAAACTCT 825
Query 739 CTATCTTACGAAAGTTATGAAGTCTCCTTT 768
|| | |||||| ||||| |||||| |||
Sbjct 826 CT-T---ACGAAACTTATGTAGTCTCATTT 851
> AT1G54630.1 | Symbols: ACP3 | acyl carrier protein 3 | chr1:20401398-20403041
REVERSE LENGTH=777
Length=777
Score = 791 bits (428), Expect = 0.0
Identities = 563/623 (90%), Gaps = 29/623 (5%)
Strand=Plus/Plus
Query 124 CTCCGATCTCTCTACGATTCATTCTTCAATGGCTTCCATTGCTGCTTCTTCTTCTACTTA 183
||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 95 CTCCGATCTCTCTACGATTCATTCTTCTATGGCTTCCATTGCTACTTCTGCTTCTACTT- 153
Query 184 C-CTACAAGCTCGTCCTCGCCAACTGGCGATTGCGGCTAATCAAGTTAGATGCTTTAGCT 242
| || |||||||||||||| ||||||| ||||| |||||| ||||||| | |||||||||
Sbjct 154 CTCTCCAAGCTCGTCCTCGTCAACTGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCT 213
Query 243 ATGGAAGAAGAAGCCATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGAGC-GTT 301
||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 214 ATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGA-CTGTT 272
Query 302 TCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTC 361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TACTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTC 332
Query 362 TCACTTAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGAT 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGAT 392
Query 422 TCTCTTGATACGGTGGAGATTGTGATGGGACTAGAGGAAGAGTTTGGGATTGAAATGGCG 481
|| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 393 TCCCTTGATACGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCG 452
Query 482 GAGGAGAAAGCACAGTCAATCGCTACAGTTGAGCAAGCAGCTG-AGCTCATTGAGGAGCT 540
||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 453 GAGGAGAAAGCACAGTCTATCGCCACAGTTGAGCAAGCAGCTGCA-CTCATTGAGGAGCT 511
Query 541 CTTGTTGGAAAAGGCAAAGTAGACTATCGTTTTATTACATTAGCAAAAA--A------CC 592
||||||||||||||| ||||||| ||| ||| | |||||||||||||| | ||
Sbjct 512 CTTGTTGGAAAAGGCCAAGTAGAAAATCCTTT-ACTACATTAGCAAAAACGAAAAAAACC 570
Query 593 AAA-CC-A--C---TATCTTCTTATTGTTTGGTTAGCTAGAGAGCAATTGTGTCTGTTGA 645
||| || | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 571 AAAACCCAAACCACTATCTTCTTATTGTTTGGTTAGCTAGAGAGCAATTGTGTCCGTTGA 630
Query 646 GATTT-ATGCTATATTTTGGGAAAATTATTACAAGGCTTGTATTTGACATAT---CTTTC 701
||||| ||||||| ||| || | |||||||||||||||||||||| | |||| |||||
Sbjct 631 GATTTTATGCTAT-TTTCGG-ATAATTATTACAAGGCTTGTATTTTA-ATATTTACTTTC 687
Query 702 TTCTAAAACATTTTACTTTCACC 724
||| ||||||||||||||||||
Sbjct 688 GTCTGAAACATTTTACTTTCACC 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5