BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474736
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54600.1 | Symbols: | pseudogene, hypothetical protein | ch... 634 0.0
AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED IN... 252 5e-66
> AT1G54600.1 | Symbols: | pseudogene, hypothetical protein |
chr1:20392508-20393630 FORWARD LENGTH=1123
Length=1123
Score = 634 bits (343), Expect = 0.0
Identities = 408/438 (93%), Gaps = 10/438 (2%)
Strand=Plus/Plus
Query 1 GATTTCAATGCCTTTGTGAGTTATGGTGACAAGTATTTAGAATCTGATAAAGTGTTTTGC 60
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1 GATTTCAATGCCTTTGTGAGTTATGGTGACAAGTA-TTCGAATCTGATAGAGTGTTTTGC 59
Query 61 ATAGACAAAGTCAAGCTAACTATTGATGAAAGCCACGGTGGTGTAGATGATACGTCTTAT 120
||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 60 TTAGACCAAGTCAAGCTAACTATTGATAAAAGCCACGGTGGTGTAGGTGATACGTCTTAT 119
Query 121 TTCACATCATGGATTG----ATGCTCTAGTAAAGCGTAGCATCACACATCTAGAGGTTAA 176
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 120 TTCACATCATGGATTGATATATACTCTAGTAAAGCGTAGCATCACACATCTAGATGTTAA 179
Query 177 --G--TG-TCTTCTAGATCTTGAGTATCATGAGATGCCCCTAATCTTTTATATCTGCAAG 231
| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 GTGTCTGATCTTCTAGATTTTGAGTATCATGAGATGCCCCTAACCTTTTATATCTGCAAG 239
Query 232 ACACTCGTATACCTAAAACTTGCTCGGGTGAGCTTTGATGATGTCGAGTTTGTTTCTTTA 291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACACTCGTATACCTAAAACTGGCTCGGGTGAGCTTTGATGATGTCGAGTTTGTTTCTTTA 299
Query 292 CCTCTTCTGAAGACAATGCATTTAAAAGATAATATGTATCCCAGTGAAGCCACTTTTGAG 351
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 CCTCTTCTCAAGACTATGCATTTAAAAGATAATATGTATCCCAATGAAGCCACTTTTGAG 359
Query 352 AGACTTGTTTCATCCTGTCCCCTCTTGGAAGAGTTAAAGATTGTTGGATGTTTGAATCAT 411
|||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 360 AGACTTGTCTCATCCTGTTCCCTCTCGGAAGAGTTAAAGATTGTTGCATGTTTGAAGCAT 419
Query 412 AATGCAAAAGTCTTTCGG 429
||||| ||||||||||||
Sbjct 420 AATGCGAAAGTCTTTCGG 437
Score = 425 bits (230), Expect = 3e-118
Identities = 284/310 (92%), Gaps = 4/310 (1%)
Strand=Plus/Plus
Query 636 CTGTCCGAATCTGAAATCCCTTATCTTGAAATGGGAAGATAGCTCAAAGTATTTGGAGGT 695
||||||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||| |
Sbjct 813 CTGTCCGAATCTGAAGTCCCTTGTCTTGAAATGGGAAGCTAGCTTAAAGCATTTGGAGTT 872
Query 696 GATGAATTCATTCTGATTTTCATCTGTGCCTAAGTGTTTGTTATCGTCTCTCGAGTTTGT 755
||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 873 GATGAATTCATTCGGATTTTCATCTGCGCCCAAGTGTTTGTTATCGTCTCTCGAGTTTGT 932
Query 756 TGATTTCGAAACGAGCATCTTGGGATATG---CTTCAGAAATGGAGCTGGTAAGGTACTT 812
|||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 933 TGATTTCGAAACGACCATCTTGGGATATTATTCTTCAGAGATGGAGCTGGTAAGGTACTT 992
Query 813 TCTAGTGAATTCGGCAATCCTCAAAAAACTCTCTCTACGTTTGCGCCATTATGAAAAAAG 872
||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 993 TCTTGAGAATTCGGCAATCCTAAAAAAACTCTCTCTACGTTTGCGCTATTATGAAAAACG 1052
Query 873 ACAATATGACATCT-TCAACAAACTCATCAAAATCCCAAGACGCTCTATCACTTGTCAAG 931
|||||||||||| | || ||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 1053 ACAATATGACATATATCTACAAACTCATCAAAATCCCAAGACGCTATATCACATGTCATG 1112
Query 932 TCGTCGTATC 941
||||||||||
Sbjct 1113 TCGTCGTATC 1122
Score = 289 bits (156), Expect = 4e-77
Identities = 191/208 (92%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 429 GCTATGCTTTTTGAGTATTTATGATTACTTATCAGAAAGCTTCAGAATAATCAATATGGA 488
||||||||||||||| |||| ||||||||| |||||||||| ||| |||||||||||||
Sbjct 527 GCTATGCTTTTTGAGCATTTGTGATTACTTGCCAGAAAGCTTTAGATTAATCAATATGGA 586
Query 489 TTCCAATGCCAAGTTAGATATTTCTCTTGCCTTTCCATCAATGAGAAAAAACATGCGCAG 548
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 587 TTTCAATGCCAAGTTAGATATTTCTCTTGCCTTCCCATCAATGAGAAAAAACATGCGCCG 646
Query 549 TTTTTTG-CTCGGGATTTCGAAGGTCAGAGATATGACGATATGTTCAAAGACTGTAAAGC 607
|||||| ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct 647 TTTTTTTTCTCGGAATTTCGAAGGTCGGAGATATGACGATATGGTCAAAGACTATAAAGC 706
Query 608 TCATCCACGAATATGTGACATCTGAACC 635
|||||||||||||||||| || ||||||
Sbjct 707 TCATCCACGAATATGTGAGATTTGAACC 734
> AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED
IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18
(InterPro:IPR004098); BEST Arabidopsis thaliana protein match
is: splicing factor Prp18 family protein (TAIR:AT1G03140.1);
Has 388 Blast hits to 388 proteins in 196 species: Archae
- 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48;
Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). |
chr1:20391560-20393503 REVERSE LENGTH=1132
Length=1132
Score = 252 bits (136), Expect = 5e-66
Identities = 168/183 (92%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 636 CTGTCCGAATCTGAAATCCCTTATCTTGAAATGGGAAGATAGCTCAAAGTATTTGGAGGT 695
||||||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||| |
Sbjct 184 CTGTCCGAATCTGAAGTCCCTTGTCTTGAAATGGGAAGCTAGCTTAAAGCATTTGGAGTT 125
Query 696 GATGAATTCATTCTGATTTTCATCTGTGCCTAAGTGTTTGTTATCGTCTCTCGAGTTTGT 755
||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 124 GATGAATTCATTCGGATTTTCATCTGCGCCCAAGTGTTTGTTATCGTCTCTCGAGTTTGT 65
Query 756 TGATTTCGAAACGAGCATCTTGGGATATG---CTTCAGAAATGGAGCTGGTAAGGTACTT 812
|||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 64 TGATTTCGAAACGACCATCTTGGGATATTATTCTTCAGAGATGGAGCTGGTAAGGTACTT 5
Query 813 TCT 815
|||
Sbjct 4 TCT 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5