BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474743
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54640.1 | Symbols: | F-box family protein-related | chr1:2... 604 3e-172
AT1G32600.1 | Symbols: | F-box associated ubiquitination effec... 351 5e-96
> AT1G54640.1 | Symbols: | F-box family protein-related | chr1:20403892-20404807
REVERSE LENGTH=738
Length=738
Score = 604 bits (327), Expect = 3e-172
Identities = 389/420 (93%), Gaps = 0/420 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTGCACAAAGATGGTTTATACCTTCTC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTACACAAAGATGGTTTATACCGTCTA 60
Query 61 GACCTCAACGAAACCACCTTGTCAAAGCTTGACTTGCCGTTTACATTACCGGCCAAAACC 120
|||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |||||
Sbjct 61 AACCTCAACGAAACCACGTTGTTGAAGCTAGACTTGCCCTTTACATTACCGGCCGAAACC 120
Query 121 GAACCGGCCTGTATTCTTCATTGTCGTGGAATGATGTGTCTGACCCTTAAAGACAACAAT 180
||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 GAACCTGTCTGTATTCTTCATTGTCGTGGAATGATGTGTCTGACCCTCAAAGAAAACAAT 180
Query 181 GACCTAGCGATTTGGAAACCAGGTTCGGATGAATTCAAGAGAATACCAATGGTTATACGG 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 181 GACCTAGCGATTTGGAAACCAGGTTCGGAGGAATTCAAGAGAATACCAATGGTTATACCG 240
Query 241 GGCCAAACCACAAATCTTTTGGGATTTGGATATGACCGGATTTCTGATGATTACAAGATC 300
||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 241 GGCCAAACCACAAATCTATTGGGATTTGGTTATGACCGGATTTCTAATGATTACAAGATT 300
Query 301 GTGACGATAATCGGTTTCAAAACATATATCTATGCGTTCAAAGAAAGTTGTTGGAGAGAA 360
|| |||| ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 301 GTAACGAAAATTGGTTTCAAAACCTATATCTATGCTTTCAAAGAAAGCTGTTGGAGAGAA 360
Query 361 AGTGTACGAGAAACTTCTCTTCATTGCAAATTCAAAGACCGGACTGGTACGGTTGTGGAT 420
||||||| ||| |||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 361 AGTGTACCAGATACTTCTCTTCATCGCAAATTCATAGACCGGACCGGTACGGTTGTGGAT 420
Score = 309 bits (167), Expect = 3e-83
Identities = 257/296 (87%), Gaps = 23/296 (8%)
Strand=Plus/Plus
Query 570 AAAAGGCAAGAAGATCATGCATTGGAATCTCGACCCGTGGACCGTGAATGAAAATGTTAA 629
|||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 450 AAAAGGCAAGGAGATCATGCATTGGAATATCGACCCGT-----G-GAAGGAAAATGTTAA 503
Query 630 AGCATTCAACATTTTTAA---T-G-TTA-----C-AAGATTCAAA---AAA-TTTGATGT 674
||| ||||||||||| || | | ||| | |||| ||| ||| ||||||||
Sbjct 504 AGCGTTCAACATTTTAAATGTTGGTTTAGCGTGCTTAGATAGAAACGGAAATTTTGATGT 563
Query 675 TGGTTTTGCGTATATAGCAAGAAACGAAGAACTCTTCATAGTGGTGAAAGGTAATGGAA- 733
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 564 TGGTTTTGCGTGCATAGCAAGAAACGAAGAACTCTTCCTAGTGGTGAAAGGTAATGGAAG 623
Query 734 AAGGAGAAGACAAGTTTATGGTGTATAACGAGAGGCAAGAGGAGTTCACTGAAGTTCCAA 793
|| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 624 AA-GAGAAGACAAGGTTATAGTGTATAACGAGAGGCGAGAGGAGTTCACTGAAGTTCCAA 682
Query 794 TTGGTGGCTCTTTGGAAGGGTTTAGATGTATGAGTATATATGACAATCGTTTCTAG 849
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTGGTGGTTCTTTGAAAGGGTTTAGATGTATGAGTATATATGACAATCGTTTCTAG 738
> AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD LENGTH=882
Length=882
Score = 351 bits (190), Expect = 5e-96
Identities = 375/462 (81%), Gaps = 21/462 (5%)
Strand=Plus/Plus
Query 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTGCACAAAGATGGTTTATACCTTCTC 60
||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAATAAACAATCATCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTTCTA 60
Query 61 GACCTCAACGAAACCAC--CTTGTCAAAGCTTGACTTGCCGTTTACATTACCGGCCAAAA 118
||||| || |||||||| ||| | || ||| || |||| ||||||||||||||| |||
Sbjct 61 GACCTTAATGAAACCACGTCTT-TGAA-GCTAAACGTGCCCTTTACATTACCGGCCCAAA 118
Query 119 CCGAACCGGCCTGTATTCTT-CATTGTCGTGGAATGATGTGTCTGACCCTTAAAGACAAC 177
| ||||| | |||||||||| | ||| |||||| |||| ||||| |||| |||||||||
Sbjct 119 CTGAACCAGTCTGTATTCTTTC-TTGCCGTGGAGTGATATGTCTCACCCGCAAAGACAAC 177
Query 178 AATGACCTAGCGATTTGGAAACC-AGGTTCGGATGAA-TTCAAGAGAATACCAATGGTTA 235
||||| |||| ||||||||||| | ||| | || ||||||||| |||| ||| |||
Sbjct 178 AATGAGTTAGCTATTTGGAAACCTAC-TTCA-ACAAAATTCAAGAGAGTACCGATGATTA 235
Query 236 TACGGGGCCAAACCACAAA-TCTTTTGGGATTTGGATATGACCGGATTTCT-GATGATTA 293
|||||| |||||| |||| |||||||||||| || ||||||||| ||| | ||||||||
Sbjct 236 AACGGGGTCAAACC-CAAAATCTTTTGGGATTCGGTTATGACCGGGTTT-TAGATGATTA 293
Query 294 CAAGATCGTGACGATAATCGGTTTCAAAACATATATCTATGCGTTCAAAGAAAGTTGTTG 353
||| || |||||||| |||| ||||| ||||||| | ||||||||||||||| |||
Sbjct 294 CAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAAAGTTCTTG 353
Query 354 GAGAGAAAGTGTACGAGAAACTTCTCT--TCATTGCAAATTCAAAGACCGGACTGGTACG 411
||||||||| || | | | |||| | ||||| |||||||| |||| ||||||
Sbjct 354 GAGAGAAAGCAAACTA-ATTCC-CTCTAGTGATTGCTTCTTCAAAGAGAGGACCGGTACG 411
Query 412 GTTGTGGATCA-TTGTATGTATTGGATACCAGACAGGTCTCA 452
||||| || || |||||||||||||||| || || ||| |||
Sbjct 412 GTTGTCGA-CAATTGTATGTATTGGATAGCAAACCGGT-TCA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5