BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474752

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G34828.1 | Symbols:  | Plant thionin family protein | chr5:1...   222    6e-58


> AT5G34828.1 | Symbols:  | Plant thionin family protein | chr5:13094069-13094344 
REVERSE LENGTH=276
Length=276

 Score =  222 bits (120),  Expect = 6e-58
 Identities = 147/160 (92%), Gaps = 2/160 (1%)
 Strand=Plus/Plus

Query  1    ATGATGGTTTCAACATGTGCGAGTACGGTAGAAATGTGTGTTAAGCATTGTGTCCCAAAT  60
            |||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||
Sbjct  61   ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT  120

Query  61   CAGTGTATGAAAGT-TTCTAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA  119
            ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA  179

Query  120  GTTCTGCAACCAAAACAAATTTGCTGATATGAAATTCTAC  159
              |||||||||| |||||||||||| || |||||||||||
Sbjct  180  ACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTAC  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6840983736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5