BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474752 Length=159 Score E Sequences producing significant alignments: (Bits) Value AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 222 6e-58 > AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344 REVERSE LENGTH=276 Length=276 Score = 222 bits (120), Expect = 6e-58 Identities = 147/160 (92%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1 ATGATGGTTTCAACATGTGCGAGTACGGTAGAAATGTGTGTTAAGCATTGTGTCCCAAAT 60 |||||||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||| Sbjct 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120 Query 61 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 119 ||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179 Query 120 GTTCTGCAACCAAAACAAATTTGCTGATATGAAATTCTAC 159 |||||||||| |||||||||||| || ||||||||||| Sbjct 180 ACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTAC 219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6840983736 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5