BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474754
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54790.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1382 0.0
> AT1G54790.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:20441055-20444029 REVERSE LENGTH=1328
Length=1328
Score = 1382 bits (748), Expect = 0.0
Identities = 852/903 (94%), Gaps = 4/903 (0%)
Strand=Plus/Plus
Query 1 AAACAACAAATAGAGAGCTCATGAATATAACTAAGATGAAAATCTTTTATGTCATCCTAT 60
|||||||| | ||||| ||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 13 AAACAACATAGCGAGAGTTCATGAATATAACTAAGATGAAACTCTTCTATGTGATCCTAT 72
Query 61 ATTTTATCATG-TATATT-CAGAATTCAAACTCCATTGATTTCGATTATCCGTCTGCTTT 118
|||||||| | | | || |||| |||||||||||| |||||| ||||||||||||||||
Sbjct 73 TTTTTATCA-GTTCT-TTACAGATTTCAAACTCCATCGATTTCAATTATCCGTCTGCTTT 130
Query 119 TAATTTCGGAGATTCCAATTCTGATACCGGTGATCTCGTTGCTGGCCTTGGCATTCGTCT 178
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 TAATTTCGGAGATTCCAATTCTGATACCGGTGATCTTGTTGCTGGCCTTGGCATTCGTCT 190
Query 179 TGACCTTCCGAATGGACAAAATTCCTTCAAAACTTCATCCCAAAGATTCTGCGATGGACG 238
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 AGACCTTCCTAACGGACAAAATTCCTTCAAAACTTCATCCCAAAGATTCTGCGATGGACG 250
Query 239 TCTTGTTATAGATTTTCTAATGGATGAAATGGACCTGCCATTTTTAAATCCTTATTTGGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 TCTTGTTATAGATTTTCTAATGGATGAAATGGACCTGCCATTTTTAAATCCATATTTGGA 310
Query 299 TTCATTAGGTCTACCAAATTTCAAAAAAGGGTGTAACTTTGCAGCAGCAGGATCCACCAT 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 311 TTCATTAGGTTTACCAAATTTCAAAAAAGGGTGTAACTTTGCAGCAGCAGGATCCACAAT 370
Query 359 TCTTCCCGCAAACCCGACCTCGGTCTCTCCTTTCTCTTTTGATCTTCAAATCTCTCAATT 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 371 TCTTCCCGCAAACCCGACCTCGGTCTCTCCTTTCTCCTTTGATCTTCAAATCTCTCAATT 430
Query 419 CATCCGGTTCAAATCTAGGGCCCTTGAACTACTTTCTAAAACAGGAAGAAAATATGATAA 478
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||
Sbjct 431 CATCCGGTTCAAATCTAGGGCCATTGAATTACTTTCTAAAACAGGAAGGAAATATGAAAA 490
Query 479 GTACTTACCACCACTTGATTATTACTCAGAAGGACTATACATGATTGACATAGGCCAAAA 538
||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 491 GTACTTACCACCAATTGATTATTATTCAAAAGGATTATACATGATTGACATAGGCCAAAA 550
Query 539 TGATTTAGCTGGTGCCTTCTACTCCAAGACTCTTGACCAAGTTCTTGCTTCGATTCCTTC 598
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 551 TGATATAGCTGGTGCCTTCTACTCCAAGACTCTTGACCAAGTTCTTGCCTCTATTCCTTC 610
Query 599 CATTCTTGAAACTTTTGAAGCTGGACTCAAGAGGCTTTATGAGGAAGGAGGCAGAAACTT 658
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 611 CATTCTTGAAACTTTTGAAGCTGGCCTCAAGAGGCTTTATGAGGAAGGAGGCAGAAACAT 670
Query 659 TTGGATACACAACACACGGCCTTTAGGATGTTTGGCTCAAAATATTGCCAAGTTTGGGAC 718
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 671 TTGGATACACAACACAGGGCCTTTAGGATGTTTAGCTCAAAATATTGCCAAGTTTGGGAC 730
Query 719 AGATTCAACAAAGCTTGATGAGTTTGGTTGTGTTAGTTCCCATAACCAAGCAGCCAAACT 778
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 731 AGATTCAACAAAACTTGATGAGTTTGGTTGCGTTAGTTCCCATAACCAAGCAGCTAAGCT 790
Query 779 CTTCAATCTTCAACTACATGCTCTGTCCAACAAATTTCAAGCCCAATTCCCTGATTCAAG 838
|||||||||||||| |||||| ||||||||||||||||||| |||| ||||||| |||
Sbjct 791 TTTCAATCTTCAACTCCATGCTATGTCCAACAAATTTCAAGCTCAATACCCTGATGCAAA 850
Query 839 TGTTACTTACGTTGATATCTTCTCTATTAAATCTAATCTCATCGCTAATTATTCCCGATT 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGTTACTTACGTTGACATCTTCTCTATTAAATCTAATCTCATCGCTAATTATTCCCGATT 910
Query 899 TGG 901
|||
Sbjct 911 TGG 913
Score = 442 bits (239), Expect = 4e-123
Identities = 272/288 (94%), Gaps = 1/288 (0%)
Strand=Plus/Plus
Query 897 TTT-GGCTTCGAAAAACCATTAATGGCGTGTTGTGGAGTCGGAGGGGCGCCATTAAATTA 955
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TTTAGGCTTCGAAAAACCGTTAATGGCGTGTTGTGGAGTCGGAGGGGCGCCATTAAATTA 1045
Query 956 CGATAACCGCATTTCTTGTGGGCAAACTAAAGTCTTAGATGGGATATCAGTAACTGCCAA 1015
||||| |||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1046 CGATAGTCGCATTACATGTGGCCAAACTAAAGTCTTAGATGGGATATCAGTAACAGCCAA 1105
Query 1016 AGCTTGCAACGACAGTTCCGAGTACATAAACTGGGATGGAATTCACTATACCGAAGCCGC 1075
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1106 AGCTTGCAACGATAGTTCCGAGTACATAAACTGGGATGGAATTCATTATACCGAAGCCGC 1165
Query 1076 AAACCAGTTCGTCTCATCTCAAATCTTAACCGGGAAGTATTCCGATCCACCGTTTTCAGA 1135
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1166 AAACGAGTTCGTCTCATCTCAAATCTTAACCGGAAAATATTCCGATCCACCGTTTTCAGA 1225
Query 1136 TCAAATGCCATTTTTTCTAAGCTTAAAATTTTAAACAATGCTGTTACA 1183
|||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 1226 TCAAATGCCATTTTTTCTAACCTTGAAATTTTAAACAATGCCGTTACA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5