BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474760
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | ... 1070 0.0
AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subuni... 529 2e-149
AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor ... 235 5e-61
AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | ... 187 1e-46
> AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3
| chr1:20451609-20452671 FORWARD LENGTH=982
Length=982
Score = 1070 bits (579), Expect = 0.0
Identities = 649/684 (95%), Gaps = 0/684 (0%)
Strand=Plus/Plus
Query 182 AGTTTGTTAGTGAAATGGATCAACAAGGACAATCATCAGCTATGAACTACGGTTCAAACC 241
|||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 50 AGTTTGGTAGAGAAATGGATCAACAAGGACAATCATCAGCTATGAACTATGGTTCAAACC 109
Query 242 CATACCAAACCAACGCCATGACCACTCCACCAGCCGGTTCGGACCATCCAGCTTACCATC 301
|||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 110 CATATCAAACCAACGCCATGACCACTACACCAACCGGTTCAGACCATCCAGCTTACCATC 169
Query 302 AGATCCACCAGCAACAACAGCAGCAGCTAACTCAACAGCTTCAATCATTCTGGGAGACTC 361
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 170 AGATCCACCAGCAACAACAACAACAGCTCACTCAACAGCTTCAATCTTTCTGGGAGACTC 229
Query 362 AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCGAGAA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 230 AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCAAGAA 289
Query 422 TCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGTTG 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TCAAGAAAATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGTTG 349
Query 482 TGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGTTGAGGTCTTGGAACCACA 541
||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 350 TGTTCGCCAGGGCCTGCGAGATGTTTATTCTGGAGCTTACGTTAAGGTCTTGGAACCATA 409
Query 542 CTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCTGTGACTAGAA 601
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 410 CTGAGGAGAACAAGAGAAGGACGTTGCAGAAGAATGATATCGCGGCTGCGGTGACTAGAA 469
Query 602 CTGATATCTTTGATTTCCTTGTGGATATTGTTCCGCGGGAGGATCTTCGTGATGAAGTCT 661
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 470 CTGATATTTTTGATTTTCTTGTGGATATTGTTCCTCGGGAGGATCTTCGTGATGAAGTCT 529
Query 662 TGGGTGGTGTTAGTGCTGAAGCTGCTACAGCTGCAGGTTATCCGTATGGATACTTGCCTC 721
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 530 TGGGTGGTGTTGGTGCTGAAGCTGCTACAGCTGCGGGTTATCCGTATGGATACTTGCCTC 589
Query 722 CTGGAACAGCTCCAATTGGGAATCCGGGAATGGTTATGGGTAACCCCGGCGCATATCCGC 781
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 590 CTGGAACAGCTCCAATTGGGAACCCGGGAATGGTTATGGGTAACCCGGGCGCGTATCCGC 649
Query 782 CTAACCCGTATATGGGTCAACCAATGTGGCAACAACAAGGACCTGAGCAGCAGGATCCTG 841
| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 650 CGAACCCGTATATGGGTCAGCCAATGTGGCAACAACCAGGACCTGAGCAGCAGGATCCTG 709
Query 842 AGAATTAGCTTTGCCTAATAAACT 865
| ||||||||| ||||||||||||
Sbjct 710 ACAATTAGCTTGGCCTAATAAACT 733
> AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit
C9 | chr1:2882543-2884337 FORWARD LENGTH=1613
Length=1613
Score = 529 bits (286), Expect = 2e-149
Identities = 468/552 (85%), Gaps = 27/552 (5%)
Strand=Plus/Plus
Query 297 CCATCAGATCCA-C--CAGCAACAACAGCAGCAGCTAACTCAACAGCTTCAATCATTCTG 353
||| |||||||| | ||||| || ||||| ||||| | || ||||||||| |||| ||
Sbjct 730 CCACCAGATCCATCAGCAGCAGCAGCAGCAACAGCTGGCACAGCAGCTTCAAGCATTTTG 789
Query 354 GGAG-ACTCAATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTT-CCA 411
|||| || |||||||||||||||||||| || || |||||||||||||| |||||| ||
Sbjct 790 GGAGAAC-CAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGAACCACAGCCTTCCCC 848
Query 412 TTGGCGAGAATCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAG 471
|| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 849 TT-GCGAGAATCAAGAAAATCATGAAAGCGGATGAAGATGTCCGTATGATCTCGGCTGAG 907
Query 472 GCGCCTGTTGTGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGTTGAGGTCT 531
|||||||| ||||| || ||||| ||||||||||| || |||||||| || | |||||
Sbjct 908 GCGCCTGTCGTGTTTGCAAGGGCCTGTGAGATGTTCATCCTGGAGCTGACACTCAGGTCG 967
Query 532 TGGAACCACACTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCT 591
|||||||||||||||||||| || ||| |||||||||||||||||||||| || ||||||
Sbjct 968 TGGAACCACACTGAGGAGAATAAGAGGCGGACGTTGCAGAAGAACGATATTGCTGCTGCT 1027
Query 592 GTGACTAGAACTGATATCTTTGATTTCCTTGTGGATATTGTTCCGCGGGAGGATCTTCGT 651
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1028 GTGACTAGAACCGATATTTTTGATTTCCTTGTGGATATTGTTCCCCGGGAGGATCTCCGA 1087
Query 652 GATGAAGTCTTGGGTGGTGTT---A---G---TG---CTGAAGCTGCTACAGCTGCAGGT 699
|||||||||||||| || || | | || | ||||||||| ||||| |||
Sbjct 1088 GATGAAGTCTTGGGAAGTATTCCGAGGGGCACTGTCCCGGAAGCTGCT---GCTGCTGGT 1144
Query 700 TATCCGTATGGATACTTGCCTCCTGGAACAGCTCCAATTGGGAATCCGGGAATGGTTATG 759
|| |||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||
Sbjct 1145 TACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGAAATCCGGGAATGGTTATG 1204
Query 760 GGTAACCCCGGCG---CATATCCGCCTAACCCGTATATGGGTCAACCAATGTGGCAACAA 816
||||| ||||| | | ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1205 GGTAATCCCGGTGGTGCGTATCCACCTAATCCTTATATGGGTCAACCAATGTGGCAACAA 1264
Query 817 CAAGG-ACCTGA 827
|| || ||||||
Sbjct 1265 CA-GGCACCTGA 1275
> AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor
Y, subunit C2 | chr1:21024764-21025883 FORWARD LENGTH=812
Length=812
Score = 235 bits (127), Expect = 5e-61
Identities = 265/330 (80%), Gaps = 16/330 (5%)
Strand=Plus/Plus
Query 305 TCCACCAGCAACAACAGCAGCAGCTAAC-TCAACAGCTTCA-ATCATTCTGGG--AGACT 360
||||||| || || |||||||| | ||| || |||||||| || ||||||| | ||
Sbjct 174 TCCACCACCACCATCAGCAGCAAC-AACAGCAGCAGCTTCAGAT-GTTCTGGGCTA-AC- 229
Query 361 C-AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCGAG 419
| ||| | ||||||| ||| | |||||||||||||||||||| | |||||| | || |
Sbjct 230 CAAATGC-AAGAGATCGAGCATACCACTGATTTCAAGAACCACACCCTTCCCCTAGCCCG 288
Query 420 AATCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGT 479
||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||
Sbjct 289 CATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATCTCTGCGGAGGCTCCTGT 348
Query 480 TG-TGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGT-TGAGGT-CTTGGAA 536
| | || || | ||| ||||||||||| ||| ||||||| || | | | || ||||||
Sbjct 349 -GATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCAC-TCT-ACGTGCTTGGAT 405
Query 537 CCACACTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCTGTGAC 596
|||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| | |
Sbjct 406 CCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATCGCCGCTGCCATTTC 465
Query 597 TAGAACTGATATCTTTGATTTCCTTGTGGA 626
|| || || | |||||||||||||||||
Sbjct 466 CAGGACCGACGTGTTTGATTTCCTTGTGGA 495
> AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4
| chr5:25415701-25417098 REVERSE LENGTH=1103
Length=1103
Score = 187 bits (101), Expect = 1e-46
Identities = 206/255 (81%), Gaps = 14/255 (5%)
Strand=Plus/Plus
Query 388 GATTTCAAGAACCAT-AGCCTTCCAT-TGGCGAGAATCAAGAAGATCATGAAAGCTGATG 445
|||||||| |||||| || | ||| | | || | ||||| || ||||||||||||||||
Sbjct 231 GATTTCAAAAACCATCAG-C-TCCCTCTAGCTCGTATCAAAAAAATCATGAAAGCTGATG 288
Query 446 AAGATGTGCGTATGATCTCGGCCGAGGCGCCTG-TTGTGTTCGCTAGGGCTTGTGAGATG 504
||||||||||||||||||| ||||| || || | || | ||||| | ||||||||| |
Sbjct 289 AAGATGTGCGTATGATCTCCGCCGAAGCACC-GATTCTCTTCGCGAAAGCTTGTGAGCT- 346
Query 505 TTT-ATTCTGGAGCTTACG-TTGAGGTCTTGGAACCACACTGAGGAGAACAAAAGGAGGA 562
||| ||||| || |||||| || || |||||| ||| |||| ||||||||| | | |
Sbjct 347 TTTCATTCTCGAACTTACGATT-AGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTA 405
Query 563 CG-TTGCAGAAGAACGATATCGCGGCTGCTG-TGACTAGAACTGATATCTTTGATTTCCT 620
|| || ||||| ||||||||||| ||||| | | |||||||| |||||||| ||||||||
Sbjct 406 CGCTT-CAGAAAAACGATATCGCTGCTGC-GATTACTAGAACCGATATCTTCGATTTCCT 463
Query 621 TGTGGATATTGTTCC 635
||| |||||||||||
Sbjct 464 TGTTGATATTGTTCC 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5