BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474763
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54840.1 | Symbols: | HSP20-like chaperones superfamily pro... 1413 0.0
> AT1G54840.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:20452593-20454249 REVERSE LENGTH=1320
Length=1320
Score = 1413 bits (765), Expect = 0.0
Identities = 1061/1192 (89%), Gaps = 67/1192 (6%)
Strand=Plus/Plus
Query 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGTAG-AACCCTAAATTAACACTCATGG 59
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||
Sbjct 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGCAGCAACCCTAAATTTACACTCCTGG 60
Query 60 ATATGAGTGAT---A---C--A-A---TG---CC--T-G-A---G--AACTCTCAAGAAC 95
||||||||||| | | | | || || | | | | |||||||||||||
Sbjct 61 ATATGAGTGATACAATGCCTGAGATCGTGTCTCCTTTAGTAGCTGAAAACTCTCAAGAAC 120
Query 96 AAGAAGAGAA-TGTGTTAATTTCATTAGACATTGAAGAAGACAAGTTGTTTCTCTTTCAT 154
||||||| || ||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 121 AAGAAGA-AAGTGTGTTAATTTCATTGGATATTGAAGAAGACAAGTTGTTTCTCTTACAT 179
Query 155 TTCATCATAGGAACTTACTTTGGACCAGATTTAAG--AA-AGCATCATCGTCCCAAGCAA 211
||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 180 TTCATCATAGGAACTTACTTTGGACCAGATTTAAGAAAACAACATCATCGTCCAAAGCAA 239
Query 212 TCAGCATTTCAGATTCAAGC-TTCAAAGAATGTCGTGGTAGATGAGTTAAGTGGCTCACT 270
||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 240 TCAGCTTTTCAGATTCAAGCGTT-GAAGAATGTTGTGGTAGATGAGTTAAGTGGCTCACT 298
Query 271 CATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTCTCAGAAATGTTGATCCGTC 330
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 299 TATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTATTAGAAATGTTGATCCGTC 358
Query 331 TCTAATCATGAAGTCGAAAAAGTTACGTGAATACTTCAATGGGAAACGCAATGTTTCGAA 390
|||| |||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 359 TCTAGTCATGAAGCCGAAAAAGTTACGTGAATATTTCAATGCGAAACGCAATGATTCGAA 418
Query 391 TAGGGATTACCCTTTTTTCGCGGATCTTTTTCCGCGAAAACTGCACCCTGAAACCCATGT 450
|||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 419 CAGGGATTACCCTCTTTTCGTGGATCTTTTTCCGCGAAAATTGCACCCTGAAACCCATGT 478
Query 451 TAGCCATAAGTTTAAGTTTATCAGGAGTATTGTGTTCATTAATGATCCAGATACTTCTTG 510
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 479 TAGGCATAAGTTTAAGTTTATCCGGAGCATTGTGTTCATTAATGATCCAGATACTTCTTG 538
Query 511 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 598
Query 571 GAGCCTTAGTGTTGATGTAACTGAA-GCTAATGG--T-GTTGCAGTTAGTGAGGTTAAGG 626
|||||||||||||||||||||| || | ||| || | ||||||| || |||||||||||
Sbjct 599 GAGCCTTAGTGTTGATGTAACTAAAAG-TAACGGCGTTGTTGCAGCTAATGAGGTTAAGG 657
Query 627 ATGAGATTGATGAGGGCGTGGAACCGTGTTTAGAAGTGCCTATTACATGTGCTGGTAATG 686
||||||||||||| |||||||||| ||| | ||| | | | | |
Sbjct 658 TTGAGATTGATGAGAGCGTGGAACC-TGTG-A-AAG-----A------G-G-----A-T- 695
Query 687 ATTATGCGGGTACTTGTACTAACGGTGAAGAAAGTGATGTTGGTGCAAAACCCGAGGTGA 746
| ||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 696 A--ATGCGGGTACTTGCACTAGCGGTGAAGAAAGTGATGTTGCTGCAAAACCTGAGGTGA 753
Query 747 CATCTGAAGCTCAGGGTGGACTAATGGCGGGACTGATGGACATTGGTGAATGCGATGATG 806
|||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 754 AATCTGAAGCTCATGGTGGACTAATGGTGGGACTGATGGACATTGGTGAATGTGATGACG 813
Query 807 CTTATCTATTCCGTGTATCGCTTCCCGGTGTGAACAGAGATGAAAGAGATTTTAGCTGTG 866
||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 814 CTTATCTCTTCCGTGTATCGCTTCCTGGTGTGAAAAGAGATGAAAGATATTTTAGCTGTG 873
Query 867 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 933
Query 927 TTCAACGGTATTCTCAGGTGTTTGAAATGCAAACGCGGAATCTCTGCCCGCCCGGTCACT 986
|| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 934 TTAAACGGTATTCTCATGTGTTTGAAATGCAAACGCGGAGTCTCTGCCCTCCCGGTAACT 993
Query 987 TTTCTGTCTCGTTTCGCCTCCCGGGTCCTGTCCATCCGCAGGAGTTTTCTGGCAACTTTG 1046
||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 994 TTTCTGTCTCGTTCCGCCTCCCCGGTCCTGTCCATCCACACGAGTTTTCTGGCAACTTTG 1053
Query 1047 GAG-AGGATGGGATTCTTGAAGGAATCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1105
|| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1054 GAACAG-ATGGAATTCTTGAAGGAGTCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1112
Query 1106 TCAAA-G-TAGT--TATAGGAATCGTCGGTTTTTGGTTTTGGTTATAGGTAG 1153
| | |||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1113 ACGTTTGGTAGTGATATAGGAAGCGTCGGTTTTTGGTTTTGGTTATGGGTAG 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5