BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474763 Length=1207 Score E Sequences producing significant alignments: (Bits) Value AT1G54840.1 | Symbols: | HSP20-like chaperones superfamily pro... 1413 0.0 > AT1G54840.1 | Symbols: | HSP20-like chaperones superfamily protein | chr1:20452593-20454249 REVERSE LENGTH=1320 Length=1320 Score = 1413 bits (765), Expect = 0.0 Identities = 1061/1192 (89%), Gaps = 67/1192 (6%) Strand=Plus/Plus Query 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGTAG-AACCCTAAATTAACACTCATGG 59 |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||| Sbjct 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGCAGCAACCCTAAATTTACACTCCTGG 60 Query 60 ATATGAGTGAT---A---C--A-A---TG---CC--T-G-A---G--AACTCTCAAGAAC 95 ||||||||||| | | | | || || | | | | ||||||||||||| Sbjct 61 ATATGAGTGATACAATGCCTGAGATCGTGTCTCCTTTAGTAGCTGAAAACTCTCAAGAAC 120 Query 96 AAGAAGAGAA-TGTGTTAATTTCATTAGACATTGAAGAAGACAAGTTGTTTCTCTTTCAT 154 ||||||| || ||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 121 AAGAAGA-AAGTGTGTTAATTTCATTGGATATTGAAGAAGACAAGTTGTTTCTCTTACAT 179 Query 155 TTCATCATAGGAACTTACTTTGGACCAGATTTAAG--AA-AGCATCATCGTCCCAAGCAA 211 ||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||| Sbjct 180 TTCATCATAGGAACTTACTTTGGACCAGATTTAAGAAAACAACATCATCGTCCAAAGCAA 239 Query 212 TCAGCATTTCAGATTCAAGC-TTCAAAGAATGTCGTGGTAGATGAGTTAAGTGGCTCACT 270 ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 240 TCAGCTTTTCAGATTCAAGCGTT-GAAGAATGTTGTGGTAGATGAGTTAAGTGGCTCACT 298 Query 271 CATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTCTCAGAAATGTTGATCCGTC 330 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 299 TATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTATTAGAAATGTTGATCCGTC 358 Query 331 TCTAATCATGAAGTCGAAAAAGTTACGTGAATACTTCAATGGGAAACGCAATGTTTCGAA 390 |||| |||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 359 TCTAGTCATGAAGCCGAAAAAGTTACGTGAATATTTCAATGCGAAACGCAATGATTCGAA 418 Query 391 TAGGGATTACCCTTTTTTCGCGGATCTTTTTCCGCGAAAACTGCACCCTGAAACCCATGT 450 |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 419 CAGGGATTACCCTCTTTTCGTGGATCTTTTTCCGCGAAAATTGCACCCTGAAACCCATGT 478 Query 451 TAGCCATAAGTTTAAGTTTATCAGGAGTATTGTGTTCATTAATGATCCAGATACTTCTTG 510 ||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 479 TAGGCATAAGTTTAAGTTTATCCGGAGCATTGTGTTCATTAATGATCCAGATACTTCTTG 538 Query 511 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 598 Query 571 GAGCCTTAGTGTTGATGTAACTGAA-GCTAATGG--T-GTTGCAGTTAGTGAGGTTAAGG 626 |||||||||||||||||||||| || | ||| || | ||||||| || ||||||||||| Sbjct 599 GAGCCTTAGTGTTGATGTAACTAAAAG-TAACGGCGTTGTTGCAGCTAATGAGGTTAAGG 657 Query 627 ATGAGATTGATGAGGGCGTGGAACCGTGTTTAGAAGTGCCTATTACATGTGCTGGTAATG 686 ||||||||||||| |||||||||| ||| | ||| | | | | | Sbjct 658 TTGAGATTGATGAGAGCGTGGAACC-TGTG-A-AAG-----A------G-G-----A-T- 695 Query 687 ATTATGCGGGTACTTGTACTAACGGTGAAGAAAGTGATGTTGGTGCAAAACCCGAGGTGA 746 | ||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||| Sbjct 696 A--ATGCGGGTACTTGCACTAGCGGTGAAGAAAGTGATGTTGCTGCAAAACCTGAGGTGA 753 Query 747 CATCTGAAGCTCAGGGTGGACTAATGGCGGGACTGATGGACATTGGTGAATGCGATGATG 806 |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 754 AATCTGAAGCTCATGGTGGACTAATGGTGGGACTGATGGACATTGGTGAATGTGATGACG 813 Query 807 CTTATCTATTCCGTGTATCGCTTCCCGGTGTGAACAGAGATGAAAGAGATTTTAGCTGTG 866 ||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||| Sbjct 814 CTTATCTCTTCCGTGTATCGCTTCCTGGTGTGAAAAGAGATGAAAGATATTTTAGCTGTG 873 Query 867 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 933 Query 927 TTCAACGGTATTCTCAGGTGTTTGAAATGCAAACGCGGAATCTCTGCCCGCCCGGTCACT 986 || ||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||| Sbjct 934 TTAAACGGTATTCTCATGTGTTTGAAATGCAAACGCGGAGTCTCTGCCCTCCCGGTAACT 993 Query 987 TTTCTGTCTCGTTTCGCCTCCCGGGTCCTGTCCATCCGCAGGAGTTTTCTGGCAACTTTG 1046 ||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||| Sbjct 994 TTTCTGTCTCGTTCCGCCTCCCCGGTCCTGTCCATCCACACGAGTTTTCTGGCAACTTTG 1053 Query 1047 GAG-AGGATGGGATTCTTGAAGGAATCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1105 || || |||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1054 GAACAG-ATGGAATTCTTGAAGGAGTCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1112 Query 1106 TCAAA-G-TAGT--TATAGGAATCGTCGGTTTTTGGTTTTGGTTATAGGTAG 1153 | | |||| |||||||| ||||||||||||||||||||||| ||||| Sbjct 1113 ACGTTTGGTAGTGATATAGGAAGCGTCGGTTTTTGGTTTTGGTTATGGGTAG 1164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59286843645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5