BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474771
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 427 3e-119
> AT1G54950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G07690.1); Has
7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:20490528-20491275
REVERSE LENGTH=291
Length=291
Score = 427 bits (231), Expect = 3e-119
Identities = 272/291 (93%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 11 ATGGCTTCCACCAATTTTCCTCTCATCTTCCTCCTCGTACTAGC-A--TCTCTCTCTCTG 67
|||||||||||||| ||||||||||||||||||||||||||| | | | ||||||| ||
Sbjct 1 ATGGCTTCCACCAACTTTCCTCTCATCTTCCTCCTCGTACTA-CTAGGT-TCTCTCTATG 58
Query 68 TAGCTTTCGGATATTCTCTTTCCACAAGAGCTGCTTTTTCAAAACAAGAAGATGAATCAT 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TAGCTTTCGGATATTCTCTTTCCACAAGAGCTGCTTTTTCAAAACAAGAAGATGAATCAT 118
Query 128 TCCTTGTGGCTACGAATGATCAAGGATCATCAATGATCGTTGTTGAAGATCTAGTAAAAA 187
| ||||||| ||| ||||||||||||||||| || || |||||||||||||| | |||||
Sbjct 119 TTCTTGTGGTTACCAATGATCAAGGATCATCGATTATTGTTGTTGAAGATCTTGGAAAAA 178
Query 188 CTCGAAGTCTTCAAGCTCTAGTCGATGGCTCAAAAGTTGTTGTGAATGAAGAAGTTCCTA 247
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 CTCGAAGTCTTCAAGCTCTAGTCGATGGCTCAAAAGTTGCTGTGAATGAAGAAGTTCCTA 238
Query 248 AGCGACGTTCAACCAAGAGTAAACTCTTCTCTAAACTACAAAAACTTGCTT 298
||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 239 AGCGACGTTCAGTCAAGAGTAAACTCTTCTCTAGACTACAAAAACTTGCTT 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14627914959
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5