BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474772
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protei... 1382 0.0
AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3 | ... 545 2e-154
> AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protein
1 | chr1:20505000-20506488 FORWARD LENGTH=1258
Length=1258
Score = 1382 bits (748), Expect = 0.0
Identities = 925/1011 (91%), Gaps = 9/1011 (1%)
Strand=Plus/Plus
Query 7 ATCACACGCACCTCCTTTGCGATTTGCCTACTCCTCTCTTTGGCCACCATTGCCACTGCT 66
|||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||
Sbjct 7 ATCACACGTGCCTCCTTTGCGATTTGCATCCTCCTCTCTTTGGCTACCATTGCTACTGCT 66
Query 67 GATTACTACGCCCCCTCATCTCCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTT 126
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GATTATTACGCTCCCTCATCTCCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTT 126
Query 127 CCACCTTCGGTTTACACTCCACCGGTTCAAAAACCTACCCTCCCACCTCCGGTTTACACT 186
|||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 127 CCACCTCCGGTTTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACT 186
Query 187 CCACCTG-CACACAAGCCTACACTCTCACCTCCGGTTTACGCTAAGCCAACTCTACCTCC 245
||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 187 CCACCTGTC-CACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACC 245
Query 246 TCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACAAGCTCCTGTCTACACTCC 305
|||||||||||||||||||||||| | ||||||||| || | ||||||||||||||||||
Sbjct 246 TCCGGCTTACACTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTCTACACTCC 305
Query 306 ACCGGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCACCTCC 365
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||||
Sbjct 306 GCCTGTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTTACCTCC 365
Query 366 AGTTTACAAGCCTACACTCCCACCTCCGGTTTTCACTAAGCCAACTCTCTCACCTCCGGT 425
|||| ||||||||||||| | ||||| |||| |||||||||||||||||||||| ||||
Sbjct 366 GGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACCTACGGT 425
Query 426 TTACAAGCCTACACTCTCTCCTCCCGTTTACACA-AAGCCAACTCTCTCACCTCCGGTTT 484
||||||||| |||||||||||||| ||| ||| | ||||||| |||||| ||||||||||
Sbjct 426 TTACAAGCCAACACTCTCTCCTCCGGTTAACA-ATAAGCCAAGTCTCTCGCCTCCGGTTT 484
Query 485 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCCATCCTCCGGTCTACA 544
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 ACAAGCCAACACTCTCTCCTCCGGTTTACACTAAGCCAACTCTCCCTCCTCCGGTCTACA 544
Query 545 AAAAGTCTCCAAGCTTTTCTCCTCCACCTCCATATGTACCAAAACCAACCTACACTCCAC 604
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 545 AAAAGTCTCCAAGCTATTCTCCTCCACCTCCATTTGCACCAAAACCAACCTACACTCCAC 604
Query 605 CCACCAAGCCATACGTCCCTGAGATCATTAAAGCCGTTG-ATGGCATCATCTTATGCAAA 663
||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 605 CCACCAAACCATACGTCCCAGAGATCATTAAAGCCGTTGGA-GGCATCATCTTATGCAAA 663
Query 664 AACGGCTACGAAAGCTACCCAATTCAAGGAGCAAAAGCAAAGATTGTGTGCTCCGAGATG 723
||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| |
Sbjct 664 AACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGCAAAGATTGTGTGCTCGGAGAGG 723
Query 724 GTATCATACGGGAAGAACAAGAACGAGGTTGTTATCTACAGCAATCCAACTGACTCTAAG 783
| ||||||| ||||| |||||||||||||| |||||||| |||||||||||| ||||
Sbjct 724 GGGTCATACGAGAAGAGTAAGAACGAGGTTGTCATCTACAGTGATCCAACTGACTTTAAG 783
Query 784 GGATATTTCCACGTGGCGTTAACCCATATCAAGAACCTATCTCACTGCCGTGTCAAACTC 843
||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 784 GGATACTTCCACGTGGTGTTAACCCACATCAAGAACCTATCTAACTGCCGTGTCAAGCTC 843
Query 844 TACACATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTCAACAAGGGTCTCACCGGA 903
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 TACACATCTCCCGTCGAGACTTGCAAGAACCCAACCAATGTCAACAAGGGTCTCACCGGA 903
Query 904 GTTCTCTTATCGATGTACTCCGACATTAACTTGAAACTCTTTAACGTCGGTCCTTTCTAC 963
|||| ||| |||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 904 GTTCCCTTCTCGATGTACTCCGACAAGAACTTGAAGCTCTTCAACGTTGGTCCTTTCTAC 963
Query 964 TTCACCG--G-TTCCAAGGCTGCTCCCGCCACTCCCAAATACTAACCATCA 1011
||||||| | |||||||||||||||||||||||||| ||||| | |||||
Sbjct 964 TTCACCGCCGGTTCCAAGGCTGCTCCCGCCACTCCCAGATACTGATCATCA 1014
Score = 89.8 bits (48), Expect = 5e-17
Identities = 53/55 (96%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 485 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT-CCATCCTCCGG 538
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 197 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCA-CCTCCGG 250
> AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3
| chr3:23182722-23183994 FORWARD LENGTH=1173
Length=1173
Score = 545 bits (295), Expect = 2e-154
Identities = 630/780 (81%), Gaps = 70/780 (9%)
Strand=Plus/Plus
Query 271 ACTAAGCCAACTCTACAAGCTCCTGTCTACACTCCACCGGTTTACAAGCCTACACTTTCA 330
|||||||||||| | | | |||| || ||||| |||||||||||||||| ||||| |||
Sbjct 240 ACTAAGCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCA 299
Query 331 CCTCCTGTTTACACTAAGCCAACTCTCTCACCTCCAGTTTACAAGCCTACACTCCCACCT 390
||||| |||||||||||||||||| || |||| |||| | | ||||| |||| |
Sbjct 300 CCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAG--T----G--TACAC-CCCA-C- 348
Query 391 CCGGTTTTCACTAAGCCAACTCTCTCACCTCCGGTTT--AC-AAGCCTAC-ACTCTCTCC 446
|| | ||| || ||||||||||||||||||||||||| || || || || | || | ||
Sbjct 349 CC-G-TTT-AC-AAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTA-TCCCACC 403
Query 447 TCCCGTTTACA---CA-AAGCCAACTCTCTCACCTCCGGTTT--AC-AAGCCTACACTCT 499
||||||||||| || | || | || ||||||||| || ||||| ||| ||
Sbjct 404 TCCCGTTTACACCCCACCGGTTTACAAGC-CAACTCCGGTTTACACTAAGCCAACAATCC 462
Query 500 CACCTCCGGTTTACACT--A--AG---CCAA--CT-CT-CC-ATCCTCCGGTCTACAAAA 547
||||||||||||||||| | | ||| || || || ||| |||||||||||||
Sbjct 463 CACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCCCTCTCCCCCGGTCTACAAAA 522
Query 548 AGTCTCCAAGCT-TT--TCTCCTCCACCTCCATATGTACCAAAACCAACCTACACTCCAC 604
|||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 523 AGTCTCCAAGCTATTCGTCTCCTCCTCCTCCATACGTACCAAAACCAACCTACACTCCAA 582
Query 605 CCACCAAGCCATACGTCCCTGAGA-TCATTAAAGCCGTTGATGGCATCA-TCTTATGCAA 662
||||||||||||||||||| |||| || |||| |||||||||||||||| || |||||||
Sbjct 583 CCACCAAGCCATACGTCCCAGAGATTC-TTAAGGCCGTTGATGGCATCATTC-TATGCAA 640
Query 663 AAACGGCTACGAAAGCTACCCAATTCAAGGAGCAAAAGCA-A-AGATTGTGTGCTCCGAG 720
|||||||||||||| |||||| |||| |||||| |||| | | |||||||||| |||||
Sbjct 641 AAACGGCTACGAAACCTACCCTATTCTAGGAGC-AAAG-ATACAGATTGTGTGTTCCGAC 698
Query 721 ATGGTATCATACGGGAAGAA-CAAGAACGAGGTTGTTATCTACAGCAATCCAACTGACTC 779
| ||||||||| || || ||| | ||||||||| |||||||| ||||||||||||||
Sbjct 699 CCAGCATCATACGGTAA-AAGCAACACCGAGGTTGTGATCTACAGTAATCCAACTGACTC 757
Query 780 TAAGGGATATTTCCACGTGGCGTTAACCCA-TATCAAGAACCTATCTCACTGCCGTGTCA 838
||||||||| |||||| || |||| | ||| ||| ||| | ||| || |||| |||||||
Sbjct 758 TAAGGGATACTTCCACTTGTCGTTGA-CCAGTATTAAGGATCTAGCTTACTGTCGTGTCA 816
Query 839 AACTCTACACATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTCAACAAGGGTCTCA 898
| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 817 AGCTCTACTTATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTTAACAAGGGTCTCA 876
Query 899 CCGGAGTTC--T---C-TTAT-CG-AT---GTA-CT-CC-G-ACATTAACTTGAAACTCT 943
| ||||||| | | || | || || || || || | ||| |||||| | ||||
Sbjct 877 CAGGAGTTCCCTTGGCGTTGTACGGATACCGTTTCTACCCGGACAAGAACTTGGAGCTCT 936
Query 944 TTAACGTCGGTCCTTTCTACTTCACCGGTTCCAAGGCTGCTCCCGCCACTCCCAAATACT 1003
||| |||||| |||||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 937 TTAGCGTCGGACCTTTCTACTACACTGGTCCCAAGGCTGCCCCCGCCACTCCCAAATACT 996
Score = 99.0 bits (53), Expect = 8e-20
Identities = 188/246 (76%), Gaps = 37/246 (15%)
Strand=Plus/Plus
Query 290 CTCCTGTCTACACTCCACCGGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGC 349
|||| || ||||||||||| |||||||||||||| || || ||||| || ||||||||||
Sbjct 187 CTCCGGTTTACACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGC 246
Query 350 CAAC--T-----CT-C----T-CA--CCTCCAGTTTACAAGCCTACACTCC-CACCTCCG 393
|||| | || | | || || || |||||||||| ||||| || ||||||||
Sbjct 247 CAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACAC-CCTCACCTCCG 305
Query 394 GTTTTCACTAAGCCAACTCTCTCACCTCCGGTTTACAAGCCTACACTCTCTCCTCCCGTT 453
|||| ||||||||||||| || |||| || | || |||| | | || ||||||
Sbjct 306 GTTTACACTAAGCCAACTATCCCACC-CC------C-AGTGTACA--C-C-CCACCCGTT 353
Query 454 TACACAAAGCCAACTCTCTCACCTCCGGTTTACA--AG-CCTAC-ACTCTCACCTCCGGT 509
| || |||||||||||||||||||||||||||| | || || | || ||||||| ||
Sbjct 354 T--AC-AAGCCAACTCTCTCACCTCCGGTTTACACTAAACCCACTA-TCCCACCTCCCGT 409
Query 510 TTACAC 515
||||||
Sbjct 410 TTACAC 415
Score = 80.5 bits (43), Expect = 3e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 478 CCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCC 529
||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 276 CCGGTTTACAAGCATACACCCTCACCTCCGGTTTACACTAAGCCAACTATCC 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5