BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474773
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54990.1 | Symbols: AXR4, RGR, RGR1 | alpha/beta-Hydrolases ... 2353 0.0
> AT1G54990.1 | Symbols: AXR4, RGR, RGR1 | alpha/beta-Hydrolases
superfamily protein | chr1:20511519-20513681 FORWARD LENGTH=1660
Length=1660
Score = 2353 bits (1274), Expect = 0.0
Identities = 1523/1638 (93%), Gaps = 38/1638 (2%)
Strand=Plus/Plus
Query 1 TCTCTCACATTCTCTCAAGTTCCAAGCTTTCTTCAATGGCGATTATCACAGAAGAAGAAG 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 12 TCTCTCACATTCTCTCAAGTTCCAAGCTTTCTTTAATGGCGATTATCACAGAAGAAGAAG 71
Query 61 AGGAACCAAAAATCCTAAATCCACCGAATAATAAAGCTAAAGACTCAAACTTTACGAAAT 120
|||| ||||||| ||||||||||||||| || ||| |||||||||| ||||||||||||
Sbjct 72 AGGATCCAAAAACCCTAAATCCACCGAAGAACAAACCTAAAGACTCTGACTTTACGAAAT 131
Query 121 CTGAATCAACTATGAAGAACCCAAAACCCCAATCTCAAAACCCTTTCCCATTTTGGTTCT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 132 CTGAATCAACTATGAAGAACCCTAAACCCCAATCTCAAAACCCTTTCCCATTTTGGTTCT 191
Query 181 ACACTACACTAATCGTCTCACTCGCCACAATCATCTTCATATCTCTCTCTGTTTTCTCTT 240
|| |||| || |||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 192 ACTTTACAGTAGTCGTCTCACTAGCCACAATCATCTTCATATCTCTCTCTCTGTTCTCTT 251
Query 241 CTCAAAACGATCCAAGATCTTGGTTTCTCTCACTCCCACCAGCTCTTCGTCAACATTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 252 CTCAAAACGATCCAAGATCTTGGTTTCTCTCACTCCCACCAGCTCTTCGTCAACATTACT 311
Query 301 CAGATGGACGAACAATCAAAGTCCAAGTAAACCCAAACGAGCCACCAATTGAAGTCTTTG 360
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 312 CAAATGGACGAACAATCAAAGTCCAAGTAAACTCAAACGAGTCACCAATTGAAGTCTTTG 371
Query 361 TAGCTGAATCAGGTTCGATTCATACAGAGAATGTTGTAATCGTTCATGGGTTAGGTCTAA 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 372 TAGCTGAATCAGGTTCGATTCATACAGAGACTGTTGTAATCGTTCATGGGTTAGGTCTAA 431
Query 421 GTTCGTTTGCGTTTAAGGAAATGATTCAGGCTCTTGGATCAAAAGGGTTTCATGGTGTTG 480
|||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||
Sbjct 432 GTTCGTTTGCTTTTAAGGAAATGATTCAATCTCTTGGATCAAAAGGGATCCATAGTGTTG 491
Query 481 CTATTGATTTACCTGGAAATGGGTTCTCAGATAAGTCAATGGTTGTTG-TTGGTGGAGAT 539
|||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||
Sbjct 492 CTATTGATTTACCTGGAAATGGGTTCTCTGATAAGTCAATGGTAG-TGATTGGTGGAGAT 550
Query 540 AGAGAGATAGGGTTTGTTGCTAGGGTTAAGGAAGTTTATGGTTTGATTCAAGAGAAAGGT 599
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 551 AGAGAGATAGGGTTTGTGGCTAGAGTTAAGGAAGTTTATGGTTTGATTCAAGAGAAAGGT 610
Query 600 GTGTTTTGGGCTTTTGATCAGATGATTGAAACTGGAGATTTGCCTTATGAGGAGATTATA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 611 GTGTTTTGGGCTTTTGATCAGATGATTGAAACTGGAGATTTGCCTTATGAGGAGATCATA 670
Query 660 AAGCTTCAGAATTCGAAAAGGAGAAGCTTTAAAGCTATTGAATTAGGGAGTGAAGAAACT 719
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 671 AAGCTTCAGAATTCGAAAAGGAGAAGCTTCAAAGCTATCGAGTTAGGGAGTGAAGAAACT 730
Query 720 GCTAGAGTTTTAGGTCAAGTGATTGATACTTTGGGTTTAGCTCCTGTGCATTTGGTTCTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GCTAGAGTTTTAGGTCAAGTGATTGATACTTTGGGTTTAGCTCCTGTGCATTTGGTTCTT 790
Query 780 CATGATTCAGCTTTAGGGTTGGCTTCGAATTGGGTTTCTGAGAATTCGCAAAGTGTTCGA 839
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 791 CATGATTCAGCTTTAGGGTTAGCTTCGAATTGGGTTTCTGAGAATTGGCAAAGTGTTCGA 850
Query 840 AGTGTAACTCTTATTGACTCTAGTATTAGTCCAGCTTTGCCGTTGTGGGTTTTGAATGTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGTGTAACTCTTATTGACTCTAGTATTAGTCCAGCTTTGCCGTTGTGGGTTTTGAATGTA 910
Query 900 CCGGGGATTCGAGAGGTTTTGTTAG-GATTTTCGTTTGGTTTTGAGAAGCTAGTGAGTTT 958
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 911 CCGGGGATTCGAGAGATTTTGTTAGCG-TTTTCGTTTGGTTTTGAGAAGCTAGTGAGCTT 969
Query 959 CCGTTGCTCAAAGGAGATGACTTTATCGCAAATTGATGCTCATAGGATACTTTTGAAGGG 1018
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 970 CCGGTGCTCAAAGGAGATGACTTTATCGGATATTGATGCTCATAGGATACTTTTGAAGGG 1029
Query 1019 AAGAAATGGGAGGGAAGCTGTTGTTGCTTCGTTAAAGAAGTTAAACCATAGCTTTGACAT 1078
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1030 AAGAAATGGGAGAGAAGCTGTTGTTGCTTCGTTAAACAAGTTAAACCATAGCTTTGACAT 1089
Query 1079 GGCTCAGTGGGGTAATTCAGATGGGATTAATGGTATTCCGATGCAAGTGATTTGGTCTAG 1138
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGCACAATGGGGTAATTCAGATGGGATTAATGGTATTCCGATGCAAGTGATTTGGTCTAG 1149
Query 1139 TGAAGGGTCTAAAGAATGGAGCGATGAGGGCCAACGTGTAGCTAAGGCTCTTCCGAAAGC 1198
||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1150 TGAAGCGTCTAAAGAATGGAGTGACGAGGGGCAACGTGTAGCTAAGGCTCTTCCGAAAGC 1209
Query 1199 AAAGTTTGTCACACACTCAGGCAGCCGGTGGCCTCAGGAAAGCAAATCCGGTGAGCTTGC 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1210 AAAGTTTGTCACACATTCAGGCAGCCGGTGGCCTCAGGAAAGCAAATCCGGCGAGCTTGC 1269
Query 1259 AGATTACATTTCAGAATTTGTCTCTCTTCTCCCGAGATCCATCAGACGGGTTACTGAAGA 1318
||||||||| ||||||||||||||||| ||||| | |||||||||||||||| |||||||
Sbjct 1270 AGATTACATATCAGAATTTGTCTCTCTCCTCCCTAAATCCATCAGACGGGTTGCTGAAGA 1329
Query 1319 ACCTATCCCGGAGAAAGTTCAGAAAGTGTTA-AAGGAAGCAAAGGCTGGTGGTGACCATG 1377
||||||||| ||| |||| |||||||||||| ||| ||||||||||||||| ||||||||
Sbjct 1330 ACCTATCCCTGAGGAAGTACAGAAAGTGTTAGAAG-AAGCAAAGGCTGGTGATGACCATG 1388
Query 1378 ACCATCATCATGGCCACGGGCATGCCCATGCTGGTTACACGGATGCTTACGGTCTTGGTG 1437
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1389 ACCATCATCATGGCCACGGGCATGCCCATGCTGGTTACTCGGATGCTTATGGTCTTGGTG 1448
Query 1438 AGGAATGGACTACT--T-GATATGCCTTTTGAGTTCTTGTTGCTTGTTATTATTATATAC 1494
|||||||||||||| | |||||||||||||| ||| |||||||||||| | |||
Sbjct 1449 AGGAATGGACTACTACTTGATATGCCTTTTGAA-----GTT-CTTGTTATTATT-T-TAC 1500
Query 1495 TATGTCCTCTTAATTTTATGTCTATTTTGAGAttttttttttttttttttttCTGGTTTA 1554
|||| |||||||| ||||| |||||||||||||||| |||| | ||||
Sbjct 1501 GATGTACTCTTAATCTTATGACTATTTTGAGATTTTTCTTTTGGGA--------G-TTTA 1551
Query 1555 AAGTCTTGAGATACTACA---AAATATGAATCTGTGT---Gt--ttttt-t--GTAAGTC 1603
|||||| |||||||||| |||||||||||||||| || ||||| | |||||||
Sbjct 1552 AAGTCT-GAGATACTACTTCCAAATATGAATCTGTGTTTTGTACTTTTTGTTTGTAAGTC 1610
Query 1604 AGCAAATTTCATTAGAAA 1621
| ||||||||| ||||||
Sbjct 1611 ATCAAATTTCAATAGAAA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5