BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474774
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55000.1 | Symbols: | peptidoglycan-binding LysM domain-con... 1164 0.0
> AT1G55000.1 | Symbols: | peptidoglycan-binding LysM domain-containing
protein | chr1:20514634-20516468 FORWARD LENGTH=1096
Length=1096
Score = 1164 bits (630), Expect = 0.0
Identities = 738/790 (93%), Gaps = 8/790 (1%)
Strand=Plus/Plus
Query 1 CTGTGGATGAGCTTCTTCTGCGGCGATCAAAAACGCCGTCGAC---AATAATCTCACCGG 57
|||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 9 CTGTGGATAAGCTGCTTCTGCGGCGATCAAAAACGCCGTCGACGATAATAACCTCACCGG 68
Query 58 CGCCACCAACACCGCCGA-TCTATCAACCAAACACAATCTCGCCGTTAAATTCTCTCTCT 116
|||||||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 69 CGCCACCAACACCGCCCATTCTATCAACCAAACAAAATCTCGCCGCTAATTTCTCTCTCT 128
Query 117 ATGGCGCTTTCA-TGCCGTGACACACTTATCCTCATCTTCCAGAAGCTAACCGTCGCCGA 175
|||||||||| | |||||||| ||||| ||| |||||||||| ||||| |||||||||||
Sbjct 129 ATGGCGCTTT-ATTGCCGTGATACACTAATCATCATCTTCCAAAAGCTCACCGTCGCCGA 187
Query 176 TCTAGCTCGTGCGAGCTGCGTCTGCAAGGTTTGGAACTCTGTAGCCACAGACGACGATCT 235
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 188 TCTAGCGCGTGCGAGCTGCGTCTGTAAGGTTTGGAATTCTGTAGCCACAGAAGACGATCT 247
Query 236 AGTGGTATCGGCTTTCACGGCGCCATGGCGGATCAAAGAACTTGTTGGAAGACCAGCTTC 295
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 248 TGTTGTATCTGCTTTCACGGCTCCATGGCGGATCAAAGAACTTGTTGGAAGACCAGCTTC 307
Query 296 TGCTTCGTTCTGGAGAGATAACGGAATCTGGAAATTTGCTATTTCTCATCGGATTCT-TC 354
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 308 TGTTTCGTTTTGGAGAGATAACGGAATCTGGAAATTTGCTATTTCTCATCGGATT-TGTC 366
Query 355 GTGGTGATAGTGTGACTAGCCTCGCCGTCAAATACTCCGTTCAGGTTATGGACATAAAGC 414
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 367 GTGGTGATAGTGTGACTAGCCTCGCCGTCAAATACGCCGTTCAGGTTATGGACATAAAGC 426
Query 415 GGCTAAACAACATGATGAGTGACCATGGGATTTACTCAAGAGACAGACTGCTTATCCCGA 474
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 427 GGCTAAACAACATGATGAGCGACCATGGTATTTACTCAAGAGACAGACTGCTTATCCCAA 486
Query 475 TAAGCAAACCCGAAATTCTCGCAAACACTATGTGTTATGTAGAGCTAGACAAATATGCCA 534
||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 487 TAAGCAATCCTGAAATTCTCGCAAACACTACGTGTTATGTTGAGCTAGACAAATATGCCA 546
Query 535 AACGAGAAGTAGCTGTGCTTTACCTCGAAGGTGCACCGAAGAGAGAACAACCTGTACTTG 594
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 547 AACGAGAAGTAGCCGTTCTTTACCTCGAAGGTGCACCGAAGAGAGAACAACCTGTACCTG 606
Query 595 GTATGAATCAACCATCCAACTTATCAGCCGATGGAAAGCGAAGGCTGATTGAATCTCTAA 654
||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 607 GTACGAATCAACAATCCAACTTATCAGCCGATGGAAAGCGTAGGCTAATTGAATCTCTAA 666
Query 655 GGAGAAGCATGCAAGTGGATGATGGAACCGCTCTATACTACTTGGCTATCGCTGAAGGGG 714
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 667 GGAGAAGCATGCAAGTTGATGATGGAACTGCTCTATACTACTTGGCTATCGCTGAAGGTG 726
Query 715 ATCCTAGATCCGCATTGTCCGAATTCTCGGCTGATCTCAGGTGGGAAAGGCAGGCTGGTC 774
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 727 ATCCTAGATCCGCATTGTCTGAGTTCTCGGCTGATCTCAGGTGGGAGAGGCAGGCTGGTC 786
Query 775 TCAACTAGGC 784
| ||||||||
Sbjct 787 TTAACTAGGC 796
Score = 99.0 bits (53), Expect = 7e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 873 TGAAATATTGTTGTCTTCCGGTAAGAAATATACATTAAACCCTGTTAAGTATA 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TGAAATATTGTTGTCTTCCGGTAAGAAATATACATTAAACCCTGTTAAGTATA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5