BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474776
Length=2687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55020.1 | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:205... 4167 0.0
> AT1G55020.1 | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525708-20530273
FORWARD LENGTH=2800
Length=2800
Score = 4167 bits (2256), Expect = 0.0
Identities = 2553/2698 (95%), Gaps = 13/2698 (0%)
Strand=Plus/Plus
Query 1 ATGATCGGAGAACTT-GTGGATCTGCTCACCGGCGGTGGAAAT-----GA-GACGAAGAA 53
||| ||||||||||| | |||||||||||||||||| |||||| || |||||||||
Sbjct 91 ATGTTCGGAGAACTTAG-GGATCTGCTCACCGGCGGCGGAAATGAGACGACGACGAAGAA 149
Query 54 GGTGAAAGGAACGGTGGTTCTGATGAAGAAGAACGTCCTCGATTTCAACGATTTCAACGC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 150 GGTGAAAGGAACGGTGGTTCTGATGAAGAAGAACGTCCTCGATTTCAACGATTTCAATGC 209
Query 114 TTCGTTTCTCGATCGTCTTCATGAATTTCTTGGAAACAAAATCACTCTTCGTCTCATTAG 173
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 210 TTCGTTTCTCGATCGTCTTCATGAATTTCTCGGAAACAAAATCACTCTTCGTCTTGTAAG 269
Query 174 CTCTGATGTTACTGATTCTGAAAACGGTTCTAAAGGCAAACTAGGGAAGGCTGCTCACTT 233
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CTCTGATGTTACTGATTCAGAAAACGGTTCTAAAGGCAAACTAGGGAAGGCTGCTCACTT 329
Query 234 GGAGGATTGGATCACCACAATCACATCGTTAACCGCAGGCGAATCGGCCTTCAAGGTCAC 293
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 330 GGAGGATTGGATCACAACAATCACGTCGTTAACCGCAGGCGAATCCGCTTTCAAGGTCAC 389
Query 294 GTTCGATTACGACAGCGATTTCGGTTACCCTGGAGCATTCTTGATCAAAAACAGCCATTT 353
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 GTTCGATTACGAAACCGATTTCGGTTACCCTGGAGCATTCTTGATCAGAAACAGCCATTT 449
Query 354 CAGCGAGTTTTTTCTCAGAAGTCTTACACTTGAAGATGTCCCAGGCCATGGCAGAGTCCA 413
||| |||||| |||||| |||||| ||||||||||| || ||||||||||||||||||||
Sbjct 450 CAGTGAGTTTCTTCTCAAAAGTCTCACACTTGAAGACGTTCCAGGCCATGGCAGAGTCCA 509
Query 414 TTACATCTGCAATTCTTGGATTTACCCTGCTAAACACTACACCAAAGACCGAGTTTTCTT 473
||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 510 TTACATCTGTAATTCTTGGATTTACCCTGCTAAACACTACACTACAGACCGAGTCTTCTT 569
Query 474 CTCCAACAAGACTTATCTTCCACATGAAACACCAGCGACGCTACTCAAGTATAGAGAAGA 533
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 570 CTCCAACAAGACTTATCTTCCACATGAAACACCAGCGACGCTGCTCAAGTATAGAGAAGA 629
Query 534 AGAGCTAGTGAGTTTGAGAGGAACCGGCGAAGGAGAGCTCAAGGAATGGGACAGAGTATA 593
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 630 AGAGCTAGTGAGTTTGAGAGGAACCGGCGAAGGAGAGCTTAAGGAATGGGACAGAGTATA 689
Query 594 TGATTATGCTTACTACAATGATTTAGGCGCCCCACCAAAAAACCCACGACCTGTACTTGG 653
||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 690 TGACTATGCTTACTACAATGATTTAGGCGTCCCACCAAAGAACCCACGGCCTGTACTTGG 749
Query 654 AGGGACACAAGAGTATCCTTACCCAAGAAGGGGAAGAACCGGGCGGAAACCGACGAAAGA 713
||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 750 AGGGACACAGGAGTATCCTTACCCAAGAAGAGGAAGAACCGGGCGGAAACCAACTAAAGA 809
Query 714 AGATCCTCAAACCGAGAGCAGGTTACCGATCACATCGAGCCTAGATATATATGTTCCACG 773
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 810 AGATCCTCAAACCGAGAGCAGGCTACCGATCACATCGAGCCTAGACATATATGTTCCACG 869
Query 774 AGATGAGAGATTTGGACACTTGAAGATGTCTGATTTCCTTGCTTATGCTCTGAAAGCAAT 833
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 870 AGATGAGAGATTTGGACACTTGAAGATGTCTGATTTCCTTGCTTATGCTCTAAAAGCGAT 929
Query 834 TGCTCAGTTTATCCAGCCTGCGCTTGAGGCCGTCTTCGACGACACTCCTAAAGAGTTTGA 893
||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 930 TGCTCAGTTCATCCAACCTGCACTTGAGGCTGTATTCGACGATACTCCTAAAGAGTTTGA 989
Query 894 TTCTTTTGAAGATGTTCTTAAGATCTATGAAGAAGGAATCGATCTACCAAACCAAGCTTT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTCTTTTGAAGATGTTCTTAAGATCTATGAAGAAGGAATCGATCTACCAAACCAAGCTTT 1049
Query 954 GATTGATAGTATCGTTAAGAATATACCGCTTGAGATGTTAAAAGAGATATTCAGAACAGA 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1050 GATTGATAGTATCGTTAAGAATATACCGCTTGAGATGTTAAAGGAGATATTCAGAACAGA 1109
Query 1014 CGGCCAGAAATTCCTTAAGTTTCCAGTGCCTCAGGTCATCAAAGAGGACAAAACTGCATG 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGGCCAGAAATTCCTTAAGTTTCCAGTGCCTCAGGTCATCAAAGAGGACAAAACTGCATG 1169
Query 1074 GAGAACTGATGAGGAATTTGCTAGAGAAATGTTGGCTGGACTTAACCCTGTTGTTATTCA 1133
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1170 GAGAACAGATGAGGAATTTGCTAGAGAAATGTTGGCTGGACTAAACCCTGTTGTTATTCA 1229
Query 1134 ACTTCTTCAGGAGTTTCCTCCAAAGAGCAAGCTTGACAGCAAATCATACGGTAACCAGAA 1193
||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1230 ACTTCTTAAGGAGTTTCCTCCAAAGAGTAAGCTTGACAGTGAATCATACGGTAACCAGAA 1289
Query 1194 CAGTACAATCACTAAAAGCCACATAGAACACAACTTAGATGGACTCACTGTTGAAGAGGC 1253
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1290 CAGTACAATCACTAAAAGCCACATAGAACACAATTTGGATGGACTCACTGTTGAAGAGGC 1349
Query 1254 TCTGGAGAAGGAGAGGTTGTTCATATTAGACCACCATGACACACTGATGCCATACTTGGG 1313
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TCTGGAGAAGGAGAGGTTGTTTATATTAGACCACCATGACACACTGATGCCATACTTGGG 1409
Query 1314 ACGTATAAACACTACCCCGACCAAGACTTATGCAAGTAGGACACTTCTGTTCCTGAAAGA 1373
||| ||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1410 ACGCGTAAACACCACCACGACCAAGACTTATGCAAGCAGGACACTTCTGTTCTTGAAAGA 1469
Query 1374 TGATGGGACCTTGAAGCCATTGGTGATAGAGCTGAGCTTGCCTCATCCTAATGGAGACAA 1433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TGATGGGACCTTGAAGCCGTTGGTGATAGAGCTGAGCTTGCCTCATCCTAATGGAGACAA 1529
Query 1434 ATTTGGAGCAGTGAGTGAAGTATATACGCCTGGTGAAGGCGTCTACGACTCGCTATGGCA 1493
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1530 ATTTGGAGCAGTGAGTGAAGTATATACGCCTGGTGAAGGTGTCTACGACTCGCTATGGCA 1589
Query 1494 GTTGGCAAAGGCTTTTGTGGGTGTAAATGACTCTGGAAATCATCAGCTTATTAGCCACTG 1553
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1590 GTTGGCTAAGGCTTTTGTCGGTGTAAATGACTCCGGAAATCATCAGCTTATTAGCCACTG 1649
Query 1554 GATGCAAACACACGCATCGATTGAACCTTTTGTGATTGCCACGAACAGACAGCTGAGTGT 1613
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1650 GATGCAAACACACGCATCGATTGAACCGTTTGTGATTGCCACAAACAGACAGCTGAGTGT 1709
Query 1614 TCTCCACCCGGTCTTTAAGCTCCTTGAACCTCATTTCCGTGATACGATGAATATCAATGC 1673
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1710 TCTTCACCCGGTCTTTAAGCTCCTTGAACCTCACTTCCGTGATACGATGAATATCAATGC 1769
Query 1674 GCTTGCTAGGCAAATCCTCATCAATGGTGGTGGTATCTTTGAGACCACTGTGTTCCCTTC 1733
||||||||||||||| | ||||||||||||||||| ||||| | ||||||||| |||||
Sbjct 1770 ACTTGCTAGGCAAATCTTGATCAATGGTGGTGGTATATTTGAAATCACTGTGTTTCCTTC 1829
Query 1734 TAAATATGCCATGGAGATGTCATCTTTCATCTACAAGAACCACTGGACCTTCCCTGACCA 1793
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1830 TAAATACGCCATGGAGATGTCATCTTTCATTTACAAAAACCACTGGACCTTCCCTGACCA 1889
Query 1794 AGCGTTGCCAGCAGAACTTAAAAAGAGAGGGATGGCCGTTGAGGATCCAGAAGCACCACA 1853
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 AGCATTACCAGCAGAACTTAAAAAGAGAGGGATGGCCGTTGAGGATCCAGAAGCACCACA 1949
Query 1854 TGGATTACGTCTGAGGATAAAAGACTATCCTTTCGCTGTGGATGGACTTGAGGTTTGGTA 1913
||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1950 CGGATTACGTCTGAGGATAAAAGACTATCCTTACGCAGTGGATGGGCTTGAGGTTTGGTA 2009
Query 1914 TGCTATTGAATCATGGGTCCGAGACTACATTTCCTTGTACTACAAGACAGAGGAGGATAT 1973
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 2010 TGCTATTGAATCATGGGTCCGAGACTACATTTTCTTGTTCTACAAGATAGAGGAGGATAT 2069
Query 1974 CCAAAGCGACACCGAGCTCCAAGCCTGGTGGAAGGAGGTGCGCGAGGAAGGTCACGGAGA 2033
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2070 CCAAACCGACACAGAGCTCCAAGCCTGGTGGAAGGAGGTGCGCGAGGAAGGTCATGGAGA 2129
Query 2034 CAAAAAGTCAGAACCTTGGTGGCCTAAAATGCAAACCCGTGAAGAACTTGTGGAGTCTTG 2093
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2130 CAAAAAGTCAGAACCATGGTGGCCTAAAATGCAAACCCGTGAAGAACTTGTTGAGTCTTG 2189
Query 2094 CACCATAATTATTTGGGTGGCTTCTGCTCTTCACGCGGCCGTTAACTTCGGACAATATCC 2153
|||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 2190 CACCATCATTATTTGGGTGGCTTCTGCTCTTCATGCAGCTGTTAACTTCGGACAGTATCC 2249
Query 2154 AGTTGCCGGGTACCTCCCGAACAGACCAACCATTAGCCGTCAGTACATGCCAAAGGAAAA 2213
|||||| ||||||||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 2250 AGTTGCTGGGTACCTCCCAAACAGACCGACTATAAGCCGTCAGTACATGCCAAAGGAAAA 2309
Query 2214 CACTCCAGAGTTTGAAGAACTTGAGAAGAATCCGGACAAAGTGTTTTTGAAGACAATCAC 2273
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 2310 CACTCCAGAGTTTGAAGAACTTGAGAAGAATCCTGATAAAGTGTTTTTGAAGACCATCAC 2369
Query 2274 AGCTCAGCTTCAAACGCTTCTAGGTATATCTCTGATTGAGATTCTCTCTACACATTCGAG 2333
|||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 2370 AGCTCAGCTTCAGACACTTCTAGGGATATCTCTGATTGAGATTCTCTCTACTCATTCTAG 2429
Query 2334 CGATGAAGTGTATTTGGGACAGAGAGATTCTAAGGAATGGGCGGCCGAGAAAGAGGCGTT 2393
||| || || ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 2430 CGACGAGGTCTATTTGGGACAGAGAGATTCTAAAGAATGGGCGGCTGAGAAAGAAGCGTT 2489
Query 2394 GGAGGCGTTCGCGAAGTTTGGAGAGAAAGTAAAGGAGATTGAGAAGAACATTGATGAGAG 2453
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2490 GGAGGCGTTCGAGAAGTTTGGAGAGAAAGTAAAGGAGATTGAGAAGAACATTGATGAGAG 2549
Query 2454 GAACGACGACGAGACTCTCAAGAACAGGACTGGTTTGGTTAAGATGCCGTACACTTTATT 2513
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2550 GAACGACGACGAGACTCTCAAGAACAGGACTGGTTTGGTTAAGATGCCATACACTTTATT 2609
Query 2514 GTTTCCGACCAGTGAAGGTGGAGTCACCGGCAGGGGAATTCCAAACAGTGTCTCCATCTA 2573
|||||||| ||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 2610 GTTTCCGAGCAGTGAAGGCGGAGTCACCGGCAGGGGAATTCCAAATAGCGTCTCTATCTG 2669
Query 2574 AAACAAGTCTCACTTCAGGATTGTGTC-G--TCA-GTTTGTGTTCTATATCCCATGGTTT 2629
|||||| |||| |||||| |||||||| | ||| || | ||||||||||||||||||||
Sbjct 2670 AAACAACTCTCGCTTCAGAATTGTGTCAGAGTCACGTGT-TGTTCTATATCCCATGGTTT 2728
Query 2630 ACTTGTTCTACAAGTTATAAACTTTGATTCTTGTTATAATAAACATCAGAATAAAGCA 2687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2729 ACTTGTTCTACAAGTTATAAACTTTGATTATTGTTATAATAAACATCAGAATAAAGCA 2786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133444068380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5