BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474777
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55030.1 | Symbols: | RNI-like superfamily protein | chr1:2... 1744 0.0
AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 254 2e-66
AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:1... 171 2e-41
> AT1G55030.1 | Symbols: | RNI-like superfamily protein | chr1:20530417-20531768
REVERSE LENGTH=1269
Length=1269
Score = 1744 bits (944), Expect = 0.0
Identities = 1168/1277 (91%), Gaps = 12/1277 (1%)
Strand=Plus/Plus
Query 1 ATGAACAATCGAAGTGTTGTTACTGATAAGATTAGTCAGTTGCCTGAAGCTTTGATTCTA 60
|||||||||||| ||| |||||| || | |||||||||||| |||||| ||||||||||
Sbjct 1 ATGAACAATCGAGGTGCTGTTACGGACATGATTAGTCAGTTACCTGAACCTTTGATTCTC 60
Query 61 CAGATATTATGCTTACTTCCTACAAAAGTTGCCATAACCACGAGTGTTTTGTCCAAAAAA 120
|||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 61 CAGATATTGGGCTCACTTCCTACGAAAGTTGCCATAACCACGAGTGTTTTGTCTAAACAA 120
Query 121 TGGCAGTCTCATTGGAAAATGATGCCTAAACTCAAGTTTGATTCTTTCCTTCGTAGACTT 180
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 121 TGGCAGTCTCATTGGAAAATGATGCCCAAACTCGAGTTTGATTCTTTCCTTCGCAGACTT 180
Query 181 GACCTAGAGAATGTTTGCAAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTT 240
||||| ||||||||| ||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 181 GACCTGGAGAATGTTACCAAGTGTTTGCTTTCACATAAGGCTCCGGTTCTACAAACTTTT 240
Query 241 GGTCTCAAAGTTCGTTTAGATGGACGTAATAATGCAGTGGATATTGGAAT-CTTGATTGG 299
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 241 AGTCTCAAAGTTCGTTTAGATAGACGTAATAATGCAGTGGATATTGG-TTGCTTGATTGG 299
Query 300 AATTGCAATGACTCGCAATTTGCGTAAGTTGGTACTAGAAGTTTACTTTCACAGAGGGTC 359
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
Sbjct 300 AATTGCAATGACTCGCAATGTGCGTAAATTGGTACTCGAAGTTTACTTTCACAGAGGGAC 359
Query 360 ATTTGCATTTCCTAGAAGCTTGTATAACTGTGAAACACTAGAGACTTTGAAACTCATCCT 419
||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 360 ATTCACATTTCCTAGGAGCTTGTACCACTGTGAAACACTAGAGACTTTGGAACTCATCCT 419
Query 420 TAATGTTGTTATGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCT 479
|||||||||||||||||||||| ||||||||| |||||||||||||| ||| || ||||
Sbjct 420 TAATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTGAAATCCCTTAAAACCCTTTATCT 479
Query 480 TCTAGCTGTGGACTTCAAAGACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAA 539
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 480 TCTAGCTGTGGACTTCAAAGACGATGAATCAGTTATTAACCTTTTATCTGGCTGTCCTAA 539
Query 540 TCTTGAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAGTGTGAAAACTTTCACTATTGT 599
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TCTTCAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAATGTGAAAACTTTCACTATTGC 599
Query 600 AGTGCCATCTTTACAGAA-ACTAGCAATTCATAATGGCAGTGGTAGACAACAACATTGGG 658
||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||| |
Sbjct 600 AGTGCCATCTTTACA-AAGACTAGCCATTCATAATGGCAGTGGTACACCACAACATTGTG 658
Query 659 GCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTTTG 718
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 GATATACCATAAATACTCCTTCTTTGAAATACTTGAAACTTGAAGGGTCTAAGGCTTTTG 718
Query 719 AGTCTTTTATGATTGAGAACGTACCGGAGCTTATGGAGGTACATATTACCGATGTCTCTG 778
||||||||||| ||||||||||| ||||||| || |||||| ||||||| ||||||||||
Sbjct 719 AGTCTTTTATGGTTGAGAACGTATCGGAGCTGATAGAGGTAAATATTACTGATGTCTCTG 778
Query 779 AGATAATCGACGAGAAACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTGGCTT 838
|||||||||||||||| |||| ||||||||| ||||| |||| |||||||||||||||||
Sbjct 779 AGATAATCGACGAGAAGCTTCGGGTATTTCTTACTTCAGTTACACGTCTTTCCTTGGCTT 838
Query 839 TAACACCCA-CGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897
|| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATCA-CCATCGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897
Query 898 GAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATAGTTCT 957
||| ||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 898 GAGATATGTACAAATAAAACATCATGGTGGAAACTACTTCCCCTCATGCTCCATAGTTCT 957
Query 958 CCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATTGGATGAACTTTGTTGAGGCT 1017
|||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 958 CCTAAACTCCAAGTCCTCAAGCTCATCGATGACACAGATGGGATGAACTATGTTGAGGCT 1017
Query 1018 AGTGGAGAATGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTTCATCTTGAGACA 1077
||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
Sbjct 1018 AGTGGAGAATGGAATCAACCAAAAAATGTTCCTGAATGTTTGCAC---CATCTTGAGAAA 1074
Query 1078 TTCATGTGGGAAGGCTACAAATGGAAACGAGAAGAGGAGGTAGAAGTGGCGAAATACATT 1137
||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 1075 TTCATTTGGGAAGGCTACAAATGGAAACGTGAAGAG-A--TAGAAGTGGCGAAATACATT 1131
Query 1138 TTAAAGAACACGAACCGTTTGAAGAAAGCTATGTTCTCCCTAAAATGTATCAGTTCTGAA 1197
||||||||||||| |||||||||| |||||| |||||||||||| |||| |||||||||
Sbjct 1132 CTAAAGAACACGAATCGTTTGAAGAGAGCTATTTTCTCCCTAAAAGGTATTAGTTCTGAA 1191
Query 1198 GAGAGGCTTGTAGTGGTTAAAGATTTGAAAAATGTTGTCAGGGCTACAACAAATTCATGC 1257
|| |||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 1192 GATAGGCTTGTGGTGGTTGAAGATTTGAAAAGTGTTGTCATGGCTACAACAAATTCATGC 1251
Query 1258 CAGTTTCAATTCATATG 1274
|||||||||||||||||
Sbjct 1252 CAGTTTCAATTCATATG 1268
> AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18169079-18170660 FORWARD
LENGTH=1344
Length=1344
Score = 254 bits (137), Expect = 2e-66
Identities = 886/1232 (72%), Gaps = 113/1232 (9%)
Strand=Plus/Plus
Query 30 GATTAGTCAGTTGCCTGAAGCTTTGATTCTACAGATATTATGC-TTACTTCCTACA-AAA 87
||| ||| ||||||||||||| ||| |||| | ||||| | | | |||||| ||| |||
Sbjct 69 GATCAGTGAGTTGCCTGAAGCGTTGCTTCTGCTCATATTGT-CGTCACTTCCAACAGAAA 127
Query 88 GTTGCCATAACCACGAGTGTTTTGTCCAAAAAATGGCAGTCTCATTGGAAAATGATGCCT 147
|| || |||| ||||||||||| ||| ||||| | |||| |||||| || ||||
Sbjct 128 -CTGTGATTGCCACTAGTGTTTTGTCTAAACAATGGAAATCTCTTTGGAAGTTGGTGCC- 185
Query 148 AAA-CTCAAGTTTGATTCT---T-TC-CT-TC-GTAGAC-TTGACCTAGAGAATGTTTGC 198
||| ||||||||||||||| | || | || || || || | ||| ||||||| |
Sbjct 186 AAATCTCAAGTTTGATTCTAAGTATCATTATCATTATACGTT-TTC-AGATAATGTTTTC 243
Query 199 AAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTTG-GTCTCAAAGTTCGTTT 257
| ||||||| |||||||||| ||||| |||||| | || |||| | | |||||| |
Sbjct 244 AGGTCTTTGATTTCACATAAAGCTCCTGTTCTAGATAG-TTTGCATTTGAAAGTT-G--A 299
Query 258 AGATGGACGTAATAATGCAGTGGATATTGGAATCTTGATTGGAATTGCAATGACTCGCAA 317
|||| | | || |||| ||||| |||| || ||||||||||||||| | | ||| |
Sbjct 300 AGAT--AAG-GATGATGCTTTGGATGTTGGGATATTGATTGGAATTGCATTTTCCCGCCA 356
Query 318 TTTGCGTAAGTTGGTACTAGAAGTTTAC-TTTCACAGAGGGTCA--TTTG---CATTTCC 371
| ||||||| || ||||| ||| |||| || | || || | |||| ||||||
Sbjct 357 TATGCGTAAATTTGTACT-GAAAATTACATTGC-TGGA-GGAAAGCTTTGTAAGATTTCC 413
Query 372 TAGAAGCTT-GTATAACTG---TGAAACACTAGAGACT-TTGAAACTCATCCTTAATG-- 424
|| |||| || || || ||| ||||| || | | ||| |||||| || ||
Sbjct 414 GAG-TGCTTGGTGTAGTTGTAATGATACACTTGA-AATCTTGGAACTCA--AGTATTGCA 469
Query 425 TTGTTATGGATGTCCCTTCTTC-GGTTTCTCTGAAATCCCTTAGAACTCTGCATCTTCTA 483
|| || | ||| | ||||| || ||||| | |||| || ||||||| ||| ||| ||||
Sbjct 470 TTCTTTTAGATTTTCCTTC-TCTGGTTTGTTTGAAGTCTCTTAGAAAGCTGTATC-TCTA 527
Query 484 GC-TGTG-GACTTCAAAGACGATGAATCCGTTAT-TAACCTTATATCTGGCTGTCCTAAT 540
| |||| || || || ||||| ||||||||| | |||||| ||| |||||| |||| |
Sbjct 528 CCATGTGAGA-TTTAACGACGAAGAATCCGTT-TGCAACCTTTTATGTGGCTGCCCTAGT 585
Query 541 CTTGAAGATTTGGTAATGCGTAGAAAT-TCAAGTAGTAG-TGTGAAAACTT-TCACTATT 597
|||||||||||||| ||| |||| || || | | | |||| | | || | ||||||
Sbjct 586 CTTGAAGATTTGGTCGTGCATAGACATAGCACG-A-CCGATGTGGAGAGTTAT-ACTATT 642
Query 598 GTAGTGCCATCTTTACAGAAACT-AGCA-AT-TCATAATGGC-AGTGGTAGACAACAACA 653
| |||||||| ||||||| ||| | || || | || || | | ||| || ||
Sbjct 643 GCGGTGCCATCATTACAGAGACTAACCATATATGATGATTACTA-TGG-AG--AA-GGTG 697
Query 654 TTGG-GGCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGC-TTGAAGGGTCTAA- 710
|||| ||||||||||||||| |||||||||||||||||||||| | | || |||| |||
Sbjct 698 TTGGAGGCTATGTGATAAATGCTCCTTCTTTGAAATACTTGAA-CATCGACGGGTTTAAT 756
Query 711 GGCTTTTGAGTCTTT-TATGATTGAGAACGTACCGGAGCTTA-TGGAGG-TACATATTAC 767
|| | |||||| ||| | |||||||||| | || |||| || |||||| || | ||||
Sbjct 757 GG-TCTTGAGT-TTTGTTTGATTGAGAAGGCGCCAGAGC-TAGTGGAGGCTA-AAATTAG 812
Query 768 CGATGTCTCTGAGATAATCGACGAGAAAC-TTCTGGTA-TTTCTCACTTCGGTTAAACGT 825
| || | ||| ||| | | ||| ||| || ||| | | ||| ||||| | ||| ||
Sbjct 813 TGCCGTTTTTGAAATAGCCAATGAG-AACATTATGG-ACTCTCTAACTTCAGCCAAATGT 870
Query 826 CTTTCCTTGGC-TTTAACACC-CACGGTGTTTACGTTTCCTACCGGTATCATCTTCAACC 883
|||||||| | ||| |||| | | | | || |||||| |||| |||||| |||
Sbjct 871 CTTTCCTT-ACACTTAGCACCTTTC-AAGATAAAGTATCCTACTGGTAAAATCTTCTACC 928
Query 884 AG-TTAGTATATTTGGAGGTAT-ATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCT 941
|| || ||| ||||| | | | || ||| | || |||||||| |||||| |
Sbjct 929 AGCTT-TTATCGCTGGAGCT-TCGTGCATATAGCTATGAGTGGTGGAATCTACTTTGGTT 986
Query 942 CGTGCTCCATAGTTCTCCTAAACTGCAAGTCCTCAAGCTCATCGAT-GACAT-AGATT-- 997
| ||||| |||||||||| ||| | ||| | || |||||| ||||| | || || ||
Sbjct 987 CATGCTCGATAGTTCTCCCAAATTACAAATTCTTAAGCTCGTCGATCCATATCAGTTTCC 1046
Query 998 GGATGAACTTTGTTGAGGCT-AG-TGGAGAATGGAATC-AACCAAAGAATGTACCTGAAT 1054
| ||| ||||| || | | ||| ||||||| || | ||||| ||| |||||||
Sbjct 1047 TAAAGAAGATTGTT-CGG-TGGGCTGG-GAATGGAGTCGACCCAAA-TGTGTTCCTGAAT 1102
Query 1055 GTTTGTTGTTTCATCTTGAGACATTCATGTGGG-AAGGCTACAAATGGAAACGAGAAGAG 1113
||||||||||||||||||||||||| ||||| ||| || | ||| ||||||||||
Sbjct 1103 GTTTGTTGTTTCATCTTGAGACATTTGTGTGGACAAGA-TATGAGTGGCAACGAGAAGAT 1161
Query 1114 GAGGTAGAAGTGGCGAAATACATT-TTAAAGAA--CACGAACCGTTTGAAGAAAGCTA-T 1169
||| || |||||| | |||||| |||| ||| || || | || ||||||||| | |
Sbjct 1162 GAGAAAGCAGTGGCTACATACATCCTTAA-GAATGCAAGATGC-TT-GAAGAAAGCAACT 1218
Query 1170 GTTCTCC-CTAAAATGTATCAGTTCTGAAGAG 1200
| |||| | |||| ||| | |||||||||
Sbjct 1219 CT-CTCCAC-AAAACCCATCGGATCTGAAGAG 1248
> AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:19530736-19531811
FORWARD LENGTH=900
Length=900
Score = 171 bits (92), Expect = 2e-41
Identities = 537/743 (72%), Gaps = 65/743 (9%)
Strand=Plus/Plus
Query 431 TGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCTT-CTAGCTGTG 489
||||||| |||||| | |||| | |||| ||||| |||||| |||| ||| | | ||||
Sbjct 47 TGGATGTTCCTTCTCCAGTTTGTATGAAGTCCCTCAGAACTTTGCACCTTGATTG-TGTG 105
Query 490 GACTTCAAAG-ACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAATCTTGAAGA 548
| ||| ||| || ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 106 AATTTC-AAGCACAATGAATCTTTTAGTAACCTTATATCTGGCTGTCCTAATCTTGAAGA 164
Query 549 TTTGGTAATGCGTAGAA-ATT-CAAG-TAG-TAGT-GTGAA--AACTTTCACTATTGTAG 601
|||| | ||| | || ||| | ||| | || || || || ||||| |||||| |
Sbjct 165 TTTGTTCATGTATC-AATATTACCCTCTAGAT-GTAGT-AATGAA-TTTCATTATTGTGG 220
Query 602 TGCCATCTTT-ACAGAAACTAGCAATTCATA-ATGGCAGTGGTAGACAACAACATTGGGG 659
||||| || | ||| |||| |||| ||| || ||| | || | | ||||
Sbjct 221 CACCATCCTTGA-AGAGGCTAGTAATT-ATAGATTACAGAG--AGGC--CG-----GGGG 269
Query 660 CTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTT-TG 718
||||||||||||| ||||| |||||||||||||||| | |||||| | || | || ||
Sbjct 270 CTATGTGATAAATGCTCCTACTTTGAAATACTTGAAAATAAAAGGGT-TGAGTCATTGTG 328
Query 719 AGTCTT-TTATGATTGAGAACGTACCGGAGCTTA-TGGAGGTACATATTACCGATGTCTC 776
|| || || |||||||||| | || | | ||| | |||| | | |||| || | |
Sbjct 329 GGTTTTGTT-TGATTGAGAATGCGCCAGTG-TTAGTTGAGGCAAAAATTAGAAATCTTTT 386
Query 777 TGAGATA-ATCGACGAGAA-ACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTG 834
| | ||| | | | ||||| | |||||| || |||| || | |||||||||||||||
Sbjct 387 TTATATATA-CAAAGAGAAGA-TTCTGGGATCCCTCAAGTCAGCCAAACGTCTTTCCTTG 444
Query 835 G-CTTTAACACCCACGGTGTTTACGTTTCCTACCGGTA-TCATCTTCAACCAGTTAGTAT 892
| ||| | ||||| || || || |||| | || | |||||| | ||| | |||
Sbjct 445 GACTT-ATCACCCTTGGAGT----GT--CCTATTGATAGT-ATCTTCTATCAGCTGGTAC 496
Query 893 ATTTGGAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATA 952
|| | ||| | |||||| |||| | || |||||||| |||||| ||| |||| |||
Sbjct 497 ATCTAGAGATCTATACATGTAAAGAGGAGTGGTGGAATCTACTTAAGCTCATGCTTGATA 556
Query 953 GTTCTCCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATT-GGATG--AACTTTG 1009
| || |||||| | |||||||| ||||| || | | | | | ||| |||| || |
Sbjct 557 GCTCGCCTAAATTACAAGTCCTTAAGCTTATTGGTAA-A-A-ATTTGGATTTTAAAAAAG 613
Query 1010 TTGAGGCTAGT-GGAG--AA-TGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTT 1065
||| | | || || | || |||||| ||||||||||||| |||||||||||||||| |
Sbjct 614 TTG-GTATGGTCGGCGGTAAATGGAATGAACCAAAGAATGTTCCTGAATGTTTGTTGTCT 672
Query 1066 CATCTTGAGACATTCATGTGGG-AAGGCTACAAATGG-AAACGAGAAG-AGGAGGTAGAA 1122
|| ||| ||| || ||||| ||| ||| | ||| ||| | |||| || || ||||
Sbjct 673 CAACTTAAGATGTTTGTGTGGACAAGT-TACCATTGGGAAA-GTGAAGTAG-AGAAAGAA 729
Query 1123 GTGGCGAAATACATTTTAAAGAA 1145
||||| | ||||||| |||||||
Sbjct 730 GTGGCTACATACATTCTAAAGAA 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5