BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474777 Length=1274 Score E Sequences producing significant alignments: (Bits) Value AT1G55030.1 | Symbols: | RNI-like superfamily protein | chr1:2... 1744 0.0 AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 254 2e-66 AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:1... 171 2e-41 > AT1G55030.1 | Symbols: | RNI-like superfamily protein | chr1:20530417-20531768 REVERSE LENGTH=1269 Length=1269 Score = 1744 bits (944), Expect = 0.0 Identities = 1168/1277 (91%), Gaps = 12/1277 (1%) Strand=Plus/Plus Query 1 ATGAACAATCGAAGTGTTGTTACTGATAAGATTAGTCAGTTGCCTGAAGCTTTGATTCTA 60 |||||||||||| ||| |||||| || | |||||||||||| |||||| |||||||||| Sbjct 1 ATGAACAATCGAGGTGCTGTTACGGACATGATTAGTCAGTTACCTGAACCTTTGATTCTC 60 Query 61 CAGATATTATGCTTACTTCCTACAAAAGTTGCCATAACCACGAGTGTTTTGTCCAAAAAA 120 |||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 61 CAGATATTGGGCTCACTTCCTACGAAAGTTGCCATAACCACGAGTGTTTTGTCTAAACAA 120 Query 121 TGGCAGTCTCATTGGAAAATGATGCCTAAACTCAAGTTTGATTCTTTCCTTCGTAGACTT 180 |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| Sbjct 121 TGGCAGTCTCATTGGAAAATGATGCCCAAACTCGAGTTTGATTCTTTCCTTCGCAGACTT 180 Query 181 GACCTAGAGAATGTTTGCAAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTT 240 ||||| ||||||||| ||||| |||||||||||||||||||||||||||||| | |||| Sbjct 181 GACCTGGAGAATGTTACCAAGTGTTTGCTTTCACATAAGGCTCCGGTTCTACAAACTTTT 240 Query 241 GGTCTCAAAGTTCGTTTAGATGGACGTAATAATGCAGTGGATATTGGAAT-CTTGATTGG 299 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 241 AGTCTCAAAGTTCGTTTAGATAGACGTAATAATGCAGTGGATATTGG-TTGCTTGATTGG 299 Query 300 AATTGCAATGACTCGCAATTTGCGTAAGTTGGTACTAGAAGTTTACTTTCACAGAGGGTC 359 ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| | Sbjct 300 AATTGCAATGACTCGCAATGTGCGTAAATTGGTACTCGAAGTTTACTTTCACAGAGGGAC 359 Query 360 ATTTGCATTTCCTAGAAGCTTGTATAACTGTGAAACACTAGAGACTTTGAAACTCATCCT 419 ||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 360 ATTCACATTTCCTAGGAGCTTGTACCACTGTGAAACACTAGAGACTTTGGAACTCATCCT 419 Query 420 TAATGTTGTTATGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCT 479 |||||||||||||||||||||| ||||||||| |||||||||||||| ||| || |||| Sbjct 420 TAATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTGAAATCCCTTAAAACCCTTTATCT 479 Query 480 TCTAGCTGTGGACTTCAAAGACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAA 539 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 480 TCTAGCTGTGGACTTCAAAGACGATGAATCAGTTATTAACCTTTTATCTGGCTGTCCTAA 539 Query 540 TCTTGAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAGTGTGAAAACTTTCACTATTGT 599 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 540 TCTTCAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAATGTGAAAACTTTCACTATTGC 599 Query 600 AGTGCCATCTTTACAGAA-ACTAGCAATTCATAATGGCAGTGGTAGACAACAACATTGGG 658 ||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||| | Sbjct 600 AGTGCCATCTTTACA-AAGACTAGCCATTCATAATGGCAGTGGTACACCACAACATTGTG 658 Query 659 GCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTTTG 718 | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 GATATACCATAAATACTCCTTCTTTGAAATACTTGAAACTTGAAGGGTCTAAGGCTTTTG 718 Query 719 AGTCTTTTATGATTGAGAACGTACCGGAGCTTATGGAGGTACATATTACCGATGTCTCTG 778 ||||||||||| ||||||||||| ||||||| || |||||| ||||||| |||||||||| Sbjct 719 AGTCTTTTATGGTTGAGAACGTATCGGAGCTGATAGAGGTAAATATTACTGATGTCTCTG 778 Query 779 AGATAATCGACGAGAAACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTGGCTT 838 |||||||||||||||| |||| ||||||||| ||||| |||| ||||||||||||||||| Sbjct 779 AGATAATCGACGAGAAGCTTCGGGTATTTCTTACTTCAGTTACACGTCTTTCCTTGGCTT 838 Query 839 TAACACCCA-CGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897 || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TATCA-CCATCGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897 Query 898 GAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATAGTTCT 957 ||| ||| ||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 898 GAGATATGTACAAATAAAACATCATGGTGGAAACTACTTCCCCTCATGCTCCATAGTTCT 957 Query 958 CCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATTGGATGAACTTTGTTGAGGCT 1017 |||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| Sbjct 958 CCTAAACTCCAAGTCCTCAAGCTCATCGATGACACAGATGGGATGAACTATGTTGAGGCT 1017 Query 1018 AGTGGAGAATGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTTCATCTTGAGACA 1077 ||||||||||||||||||||||| ||||| |||||||||||| |||||||||| | Sbjct 1018 AGTGGAGAATGGAATCAACCAAAAAATGTTCCTGAATGTTTGCAC---CATCTTGAGAAA 1074 Query 1078 TTCATGTGGGAAGGCTACAAATGGAAACGAGAAGAGGAGGTAGAAGTGGCGAAATACATT 1137 ||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| Sbjct 1075 TTCATTTGGGAAGGCTACAAATGGAAACGTGAAGAG-A--TAGAAGTGGCGAAATACATT 1131 Query 1138 TTAAAGAACACGAACCGTTTGAAGAAAGCTATGTTCTCCCTAAAATGTATCAGTTCTGAA 1197 ||||||||||||| |||||||||| |||||| |||||||||||| |||| ||||||||| Sbjct 1132 CTAAAGAACACGAATCGTTTGAAGAGAGCTATTTTCTCCCTAAAAGGTATTAGTTCTGAA 1191 Query 1198 GAGAGGCTTGTAGTGGTTAAAGATTTGAAAAATGTTGTCAGGGCTACAACAAATTCATGC 1257 || |||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||| Sbjct 1192 GATAGGCTTGTGGTGGTTGAAGATTTGAAAAGTGTTGTCATGGCTACAACAAATTCATGC 1251 Query 1258 CAGTTTCAATTCATATG 1274 ||||||||||||||||| Sbjct 1252 CAGTTTCAATTCATATG 1268 > AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr3:18169079-18170660 FORWARD LENGTH=1344 Length=1344 Score = 254 bits (137), Expect = 2e-66 Identities = 886/1232 (72%), Gaps = 113/1232 (9%) Strand=Plus/Plus Query 30 GATTAGTCAGTTGCCTGAAGCTTTGATTCTACAGATATTATGC-TTACTTCCTACA-AAA 87 ||| ||| ||||||||||||| ||| |||| | ||||| | | | |||||| ||| ||| Sbjct 69 GATCAGTGAGTTGCCTGAAGCGTTGCTTCTGCTCATATTGT-CGTCACTTCCAACAGAAA 127 Query 88 GTTGCCATAACCACGAGTGTTTTGTCCAAAAAATGGCAGTCTCATTGGAAAATGATGCCT 147 || || |||| ||||||||||| ||| ||||| | |||| |||||| || |||| Sbjct 128 -CTGTGATTGCCACTAGTGTTTTGTCTAAACAATGGAAATCTCTTTGGAAGTTGGTGCC- 185 Query 148 AAA-CTCAAGTTTGATTCT---T-TC-CT-TC-GTAGAC-TTGACCTAGAGAATGTTTGC 198 ||| ||||||||||||||| | || | || || || || | ||| ||||||| | Sbjct 186 AAATCTCAAGTTTGATTCTAAGTATCATTATCATTATACGTT-TTC-AGATAATGTTTTC 243 Query 199 AAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTTG-GTCTCAAAGTTCGTTT 257 | ||||||| |||||||||| ||||| |||||| | || |||| | | |||||| | Sbjct 244 AGGTCTTTGATTTCACATAAAGCTCCTGTTCTAGATAG-TTTGCATTTGAAAGTT-G--A 299 Query 258 AGATGGACGTAATAATGCAGTGGATATTGGAATCTTGATTGGAATTGCAATGACTCGCAA 317 |||| | | || |||| ||||| |||| || ||||||||||||||| | | ||| | Sbjct 300 AGAT--AAG-GATGATGCTTTGGATGTTGGGATATTGATTGGAATTGCATTTTCCCGCCA 356 Query 318 TTTGCGTAAGTTGGTACTAGAAGTTTAC-TTTCACAGAGGGTCA--TTTG---CATTTCC 371 | ||||||| || ||||| ||| |||| || | || || | |||| |||||| Sbjct 357 TATGCGTAAATTTGTACT-GAAAATTACATTGC-TGGA-GGAAAGCTTTGTAAGATTTCC 413 Query 372 TAGAAGCTT-GTATAACTG---TGAAACACTAGAGACT-TTGAAACTCATCCTTAATG-- 424 || |||| || || || ||| ||||| || | | ||| |||||| || || Sbjct 414 GAG-TGCTTGGTGTAGTTGTAATGATACACTTGA-AATCTTGGAACTCA--AGTATTGCA 469 Query 425 TTGTTATGGATGTCCCTTCTTC-GGTTTCTCTGAAATCCCTTAGAACTCTGCATCTTCTA 483 || || | ||| | ||||| || ||||| | |||| || ||||||| ||| ||| |||| Sbjct 470 TTCTTTTAGATTTTCCTTC-TCTGGTTTGTTTGAAGTCTCTTAGAAAGCTGTATC-TCTA 527 Query 484 GC-TGTG-GACTTCAAAGACGATGAATCCGTTAT-TAACCTTATATCTGGCTGTCCTAAT 540 | |||| || || || ||||| ||||||||| | |||||| ||| |||||| |||| | Sbjct 528 CCATGTGAGA-TTTAACGACGAAGAATCCGTT-TGCAACCTTTTATGTGGCTGCCCTAGT 585 Query 541 CTTGAAGATTTGGTAATGCGTAGAAAT-TCAAGTAGTAG-TGTGAAAACTT-TCACTATT 597 |||||||||||||| ||| |||| || || | | | |||| | | || | |||||| Sbjct 586 CTTGAAGATTTGGTCGTGCATAGACATAGCACG-A-CCGATGTGGAGAGTTAT-ACTATT 642 Query 598 GTAGTGCCATCTTTACAGAAACT-AGCA-AT-TCATAATGGC-AGTGGTAGACAACAACA 653 | |||||||| ||||||| ||| | || || | || || | | ||| || || Sbjct 643 GCGGTGCCATCATTACAGAGACTAACCATATATGATGATTACTA-TGG-AG--AA-GGTG 697 Query 654 TTGG-GGCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGC-TTGAAGGGTCTAA- 710 |||| ||||||||||||||| |||||||||||||||||||||| | | || |||| ||| Sbjct 698 TTGGAGGCTATGTGATAAATGCTCCTTCTTTGAAATACTTGAA-CATCGACGGGTTTAAT 756 Query 711 GGCTTTTGAGTCTTT-TATGATTGAGAACGTACCGGAGCTTA-TGGAGG-TACATATTAC 767 || | |||||| ||| | |||||||||| | || |||| || |||||| || | |||| Sbjct 757 GG-TCTTGAGT-TTTGTTTGATTGAGAAGGCGCCAGAGC-TAGTGGAGGCTA-AAATTAG 812 Query 768 CGATGTCTCTGAGATAATCGACGAGAAAC-TTCTGGTA-TTTCTCACTTCGGTTAAACGT 825 | || | ||| ||| | | ||| ||| || ||| | | ||| ||||| | ||| || Sbjct 813 TGCCGTTTTTGAAATAGCCAATGAG-AACATTATGG-ACTCTCTAACTTCAGCCAAATGT 870 Query 826 CTTTCCTTGGC-TTTAACACC-CACGGTGTTTACGTTTCCTACCGGTATCATCTTCAACC 883 |||||||| | ||| |||| | | | | || |||||| |||| |||||| ||| Sbjct 871 CTTTCCTT-ACACTTAGCACCTTTC-AAGATAAAGTATCCTACTGGTAAAATCTTCTACC 928 Query 884 AG-TTAGTATATTTGGAGGTAT-ATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCT 941 || || ||| ||||| | | | || ||| | || |||||||| |||||| | Sbjct 929 AGCTT-TTATCGCTGGAGCT-TCGTGCATATAGCTATGAGTGGTGGAATCTACTTTGGTT 986 Query 942 CGTGCTCCATAGTTCTCCTAAACTGCAAGTCCTCAAGCTCATCGAT-GACAT-AGATT-- 997 | ||||| |||||||||| ||| | ||| | || |||||| ||||| | || || || Sbjct 987 CATGCTCGATAGTTCTCCCAAATTACAAATTCTTAAGCTCGTCGATCCATATCAGTTTCC 1046 Query 998 GGATGAACTTTGTTGAGGCT-AG-TGGAGAATGGAATC-AACCAAAGAATGTACCTGAAT 1054 | ||| ||||| || | | ||| ||||||| || | ||||| ||| ||||||| Sbjct 1047 TAAAGAAGATTGTT-CGG-TGGGCTGG-GAATGGAGTCGACCCAAA-TGTGTTCCTGAAT 1102 Query 1055 GTTTGTTGTTTCATCTTGAGACATTCATGTGGG-AAGGCTACAAATGGAAACGAGAAGAG 1113 ||||||||||||||||||||||||| ||||| ||| || | ||| |||||||||| Sbjct 1103 GTTTGTTGTTTCATCTTGAGACATTTGTGTGGACAAGA-TATGAGTGGCAACGAGAAGAT 1161 Query 1114 GAGGTAGAAGTGGCGAAATACATT-TTAAAGAA--CACGAACCGTTTGAAGAAAGCTA-T 1169 ||| || |||||| | |||||| |||| ||| || || | || ||||||||| | | Sbjct 1162 GAGAAAGCAGTGGCTACATACATCCTTAA-GAATGCAAGATGC-TT-GAAGAAAGCAACT 1218 Query 1170 GTTCTCC-CTAAAATGTATCAGTTCTGAAGAG 1200 | |||| | |||| ||| | ||||||||| Sbjct 1219 CT-CTCCAC-AAAACCCATCGGATCTGAAGAG 1248 > AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:19530736-19531811 FORWARD LENGTH=900 Length=900 Score = 171 bits (92), Expect = 2e-41 Identities = 537/743 (72%), Gaps = 65/743 (9%) Strand=Plus/Plus Query 431 TGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCTT-CTAGCTGTG 489 ||||||| |||||| | |||| | |||| ||||| |||||| |||| ||| | | |||| Sbjct 47 TGGATGTTCCTTCTCCAGTTTGTATGAAGTCCCTCAGAACTTTGCACCTTGATTG-TGTG 105 Query 490 GACTTCAAAG-ACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAATCTTGAAGA 548 | ||| ||| || ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 106 AATTTC-AAGCACAATGAATCTTTTAGTAACCTTATATCTGGCTGTCCTAATCTTGAAGA 164 Query 549 TTTGGTAATGCGTAGAA-ATT-CAAG-TAG-TAGT-GTGAA--AACTTTCACTATTGTAG 601 |||| | ||| | || ||| | ||| | || || || || ||||| |||||| | Sbjct 165 TTTGTTCATGTATC-AATATTACCCTCTAGAT-GTAGT-AATGAA-TTTCATTATTGTGG 220 Query 602 TGCCATCTTT-ACAGAAACTAGCAATTCATA-ATGGCAGTGGTAGACAACAACATTGGGG 659 ||||| || | ||| |||| |||| ||| || ||| | || | | |||| Sbjct 221 CACCATCCTTGA-AGAGGCTAGTAATT-ATAGATTACAGAG--AGGC--CG-----GGGG 269 Query 660 CTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTT-TG 718 ||||||||||||| ||||| |||||||||||||||| | |||||| | || | || || Sbjct 270 CTATGTGATAAATGCTCCTACTTTGAAATACTTGAAAATAAAAGGGT-TGAGTCATTGTG 328 Query 719 AGTCTT-TTATGATTGAGAACGTACCGGAGCTTA-TGGAGGTACATATTACCGATGTCTC 776 || || || |||||||||| | || | | ||| | |||| | | |||| || | | Sbjct 329 GGTTTTGTT-TGATTGAGAATGCGCCAGTG-TTAGTTGAGGCAAAAATTAGAAATCTTTT 386 Query 777 TGAGATA-ATCGACGAGAA-ACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTG 834 | | ||| | | | ||||| | |||||| || |||| || | ||||||||||||||| Sbjct 387 TTATATATA-CAAAGAGAAGA-TTCTGGGATCCCTCAAGTCAGCCAAACGTCTTTCCTTG 444 Query 835 G-CTTTAACACCCACGGTGTTTACGTTTCCTACCGGTA-TCATCTTCAACCAGTTAGTAT 892 | ||| | ||||| || || || |||| | || | |||||| | ||| | ||| Sbjct 445 GACTT-ATCACCCTTGGAGT----GT--CCTATTGATAGT-ATCTTCTATCAGCTGGTAC 496 Query 893 ATTTGGAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATA 952 || | ||| | |||||| |||| | || |||||||| |||||| ||| |||| ||| Sbjct 497 ATCTAGAGATCTATACATGTAAAGAGGAGTGGTGGAATCTACTTAAGCTCATGCTTGATA 556 Query 953 GTTCTCCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATT-GGATG--AACTTTG 1009 | || |||||| | |||||||| ||||| || | | | | | ||| |||| || | Sbjct 557 GCTCGCCTAAATTACAAGTCCTTAAGCTTATTGGTAA-A-A-ATTTGGATTTTAAAAAAG 613 Query 1010 TTGAGGCTAGT-GGAG--AA-TGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTT 1065 ||| | | || || | || |||||| ||||||||||||| |||||||||||||||| | Sbjct 614 TTG-GTATGGTCGGCGGTAAATGGAATGAACCAAAGAATGTTCCTGAATGTTTGTTGTCT 672 Query 1066 CATCTTGAGACATTCATGTGGG-AAGGCTACAAATGG-AAACGAGAAG-AGGAGGTAGAA 1122 || ||| ||| || ||||| ||| ||| | ||| ||| | |||| || || |||| Sbjct 673 CAACTTAAGATGTTTGTGTGGACAAGT-TACCATTGGGAAA-GTGAAGTAG-AGAAAGAA 729 Query 1123 GTGGCGAAATACATTTTAAAGAA 1145 ||||| | ||||||| ||||||| Sbjct 730 GTGGCTACATACATTCTAAAGAA 752 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62650280160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5