BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474778
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55035.1 | Symbols: | pseudogene, putative importin alpha, ... 1581 0.0
AT3G06720.1 | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1,... 974 0.0
> AT1G55035.1 | Symbols: | pseudogene, putative importin alpha,
similar to importin alpha GI:3342556 from (Arabidopsis thaliana);
blastp match of 66% identity and 2.6e-167 P-value to
GP|13752562|gb|AAK38727.1|AF369707_1|AF369707 importin alpha
2 {Capsicum annuum} | chr1:20532844-20534375 REVERSE LENGTH=1532
Length=1532
Score = 1581 bits (856), Expect = 0.0
Identities = 1067/1168 (91%), Gaps = 18/1168 (2%)
Strand=Plus/Plus
Query 1 ATGTCGCTGAATCCTAACACCAGAGCGGAGGTCCGCCGGAATCAGTACAAGGTTGCGGTG 60
||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGCTGAATCCTAATACCAAAGCGGAGGTCCGCCGGAATCAGTACAAAGTTGCGGTG 60
Query 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAGCA-AACATGGTTGAGGTTCGTAAAATCAA 119
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAG-AGAGCATGGTTGAGGTTCGTAAAATCAA 119
Query 120 GCGAGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTAATGAATTCTCGGGTTTGGT 179
|| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 120 ACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTGATGAGTTCTCGGGTTTGGT 179
Query 180 CGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTTGTCGGATGATATTGC 239
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 180 TGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTGGTCAGATGATCTTGC 239
Query 240 CTTGCAGCTCAAGT-CAACTACTCAAATCAGGGAGCTTCTATCTAGGGCGAGAGATCCTC 298
|||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CTTGCAGCTCAAGTACA-CTACTCAAATCAGGGCCCTTCTATCTAGGGCGAGAGATCCTC 298
Query 299 CAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTCGTTGAGTTTCTTAAGAAAG 358
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 299 TAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTTGTAGAGTTTCTTAAGAAAG 358
Query 359 AAGATAACCCTAATATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGCATCTGGAA 418
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 359 AAGATAACCCTAAGATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGTATCAGGAA 418
Query 419 CATCAGATCATACAAAGGTTGTAGTAGATCACAATGCTGTTCCAATTTTTGTCCAGCTTC 478
| ||| |||||||||||||||||||||||| |||||||||||| || |||||||| ||||
Sbjct 419 CTTCAAATCATACAAAGGTTGTAGTAGATCTCAATGCTGTTCCGATCTTTGTCCACCTTC 478
Query 479 TTGCTTCTTCCCCAAGCGATGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACGT-G 537
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 479 TTGCTTCTTCCCCAAGCGACGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACATTG 538
Query 538 TCTGCTGATTCATCGCAATGCCGTG-ATTATGTCCTCAGATGTGGAGCACTTGTTCCGCT 596
||| ||||||| |||||| | || || |||| || | |||||| ||||||||||||||
Sbjct 539 -CTGGTGATTCACCGCAATTCTGTACAT-ATGTTCTTAAATGTGGGGCACTTGTTCCGCT 596
Query 597 TCTCAATCAGCTTAATGAGCATACCGAA-TTGTCTATGCTTAGAGAAGTCACATGGACTT 655
|||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||
Sbjct 597 TCTCAATCAGCTTAATTAGCATACC-AAGTTGTCTACGCTTAGAGAAGTCACATGGACTT 655
Query 656 TGTCACACTTGTGTGGTGATGG-CAAGGCGAATCCCGCAGCGCTTCAAGCCCTTGAACGA 714
||||| |||||||| ||| ||| || |||||||||||||||| |||||||||||||||||
Sbjct 656 TGTCAAACTTGTGTCGTGGTGGACA-GGCGAATCCCGCAGCGTTTCAAGCCCTTGAACGA 714
Query 715 GTAATTCATTCTACTGATGAACAAGTCTTG-ACAAATGCTTGTTGGGCTCTCAAATCCCT 773
||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | ||
Sbjct 715 TTAATTCATTCTACTGATGAACAAGTCTTGGAAAAA-GCTTGTTGGGCTCTCAAGTATCT 773
Query 774 CTCTGGTGGGACTAATGACAAAATCCAGAATGTCATCGAGGCCGGTGTTGTACCAAGACT 833
||| || || ||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 774 ATCTAAAGGAACCGATGACAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACT 833
Query 834 TGTTGAACTTCTCCTCCATCCTTCTATATC-TGTGGTAATTCCTGCGCTTCGCACAGTTG 892
||||||||||| ||||||||||||||| | |||| ||||||||||||||| ||| ||||
Sbjct 834 CGTTGAACTTCTGCTCCATCCTTCTATA-CATGTGCTAATTCCTGCGCTTCTCACTGTTG 892
Query 893 GAAATATAGTTACTGGAGATGATCTACAAACGCAGTGTGTGATAGATAGTGGTGCTTTAC 952
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 893 GAAATATAGTTACTGGAAATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTAC 952
Query 953 CTTGTTTTGTCAACCTTCTAACTCAAAACTATAAGAAAAATATTAAGAAGGAAGCTTGTT 1012
|||||||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct 953 CTTGTTTTCTCAACATTCTAACTCACAACTATAAGAAAGATATTAAGAAGGATGCTTGTT 1012
Query 1013 GGACGATTTCGAACATCACAGCAGGAACACATGAACAGATCCAGATGGTAATAGAGTCTA 1072
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 1013 GGACGATTTCAAACATCACTGCAGGAACACAAGAACAGATCCAGATGGTAATAGAGGCTA 1072
Query 1073 ATTTGATTGCCCCCTTAGTTAATCTG-TGTCAATATGCTGAATTTGACATTAAGAAAGAA 1131
||||||||| || || ||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 1073 ATTTGATTGATCCGTTGGTTCATCTGCT-TCAATATGCTGAATTTGACATTAAGAAAGAA 1131
Query 1132 GCTGCATGGGCAATTTCCAATGTAGCTT 1159
|| ||||||||||||| ||||||| |||
Sbjct 1132 GCAGCATGGGCAATTTACAATGTAACTT 1159
> AT3G06720.1 | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1,
IMPA1 | importin alpha isoform 1 | chr3:2120324-2124131 FORWARD
LENGTH=2330
Length=2330
Score = 974 bits (527), Expect = 0.0
Identities = 990/1204 (82%), Gaps = 69/1204 (6%)
Strand=Plus/Plus
Query 1 ATGTCGCTGA-ATCCTAACAC-CAGAGCGGAGGTCCGCCGGAATCAG-TACAAGGTTGCG 57
||||| |||| | || ||| | ||| ||||||| |||||||| | | ||||| |||||
Sbjct 236 ATGTCACTGAGA-CCCAACGCTAAGA-CGGAGGTTCGCCGGAA-CCGATACAAAGTTGCA 292
Query 58 GTGGATGCAGAGGAGGGACGACGGAGGAGAGAAGCA-AACATGGTTGAGGTTCGTAAAAT 116
|||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||
Sbjct 293 GTGGATGCGGAGGAAGGACGACGGAGGAGAGAAG-ACAACATGGTTGAGATCCGTAAAAG 351
Query 117 CAAGCGAGAGGAGAGTCTGATGAAGAAGAGGCGTGAA-G--T------TCTTAATGAATT 167
|||||| ||||||||| ||||||||||||| |||||| | | |||| | | ||
Sbjct 352 CAAGCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGGTTT 411
Query 168 --C-TC-G-----G--G-TTTGGTCGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGC 215
| || | | | | ||||||| ||||||||| ||| || ||||||||||||
Sbjct 412 CCCTTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGATAGTCTGAAGGATATGGTCGC 471
Query 216 TGGGGTTTTGTCGGATGATATTGCCTTGCAGCTCAAGTCAACTACTCAAATCAGGGAGCT 275
|||||||| ||| ||||| |||||||||||| |||| |||||||| ||||| ||||
Sbjct 472 TGGGGTTTGGTCCGATGACCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCT 531
Query 276 TCTATCTAGGGCGAG-AGATCCTCCAATCGACGAAGTGAT-AGATTCTGGTGTTGTTCCT 333
||| |||| | ||| || |||||||||||| |||||||| || | ||||||||||||||
Sbjct 532 TCTCTCTATTGAGAGAAG-TCCTCCAATCGAGGAAGTGATAAG-TGCTGGTGTTGTTCCT 589
Query 334 CGGTTCGTTGAGTTTCTTAAGAAAGAAGATAACCCTAATATTCAGTATGAGGCAGCTTGG 393
|||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 590 AGGTTTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCCATTCAGTTTGAGGCAGCTTGG 649
Query 394 GCTCTAACAAACATTGCATCTGGAACATCAGATCATACAAAGGTTGTAGTAGATCACAAT 453
||||||||||||||||||||||||||||| ||||| || ||||||||| | |||||||||
Sbjct 650 GCTCTAACAAACATTGCATCTGGAACATCGGATCACACTAAGGTTGTAATCGATCACAAT 709
Query 454 GCTGTTCCAATTTTTGTCCAGCTTCTTGCTTCTTCCCCAAGCGATGATGTCCGTGAACTA 513
||||||||||| ||||| |||||||||||||| ||| | |||||||||| ||||||| |
Sbjct 710 GCTGTTCCAATCTTTGTTCAGCTTCTTGCTTC--CCCTA-GCGATGATGTTCGTGAAC-A 765
Query 514 G-CTGTATGGGCGTTAGGTAACGT-GTCTGCTGATTCATCGCAATGCCGTGAT-TATGTC 570
| |||||||||| || |||||||| | ||| ||||||| | | ||||||||| | |||
Sbjct 766 GGCTGTATGGGCTTTGGGTAACGTTG-CTGGTGATTCACCACGGTGCCGTGATCT-TGTT 823
Query 571 CTCAGATGTGGAGCACTTG-TTCCGCTTCTCAATCAGCTTAATGAGCATACCGAATTGTC 629
|| ||||||| ||||| | ||||||| ||||||||||||||||||||| | |||||||
Sbjct 824 CTTGGATGTGGGGCACT-GCTTCCGCTGCTCAATCAGCTTAATGAGCATGCTAAATTGTC 882
Query 630 TATGCTTAGAGAA-GTCACATGGACTTTGTCACACTTGTGTGGTG--ATGGCA-AGGCGA 685
|||||| || || | ||| ||||| |||||| |||| ||| ||| | | | || |
Sbjct 883 CATGCTTCGA-AATGCCACTTGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTC 941
Query 686 A-TC---CC-G--CAG-C--GCT-T-CAAGCCCTTGAACGAGTAATTCATTCT-ACTGAT 732
| | || | || | ||| | | |||||||||||| |||||||||| | ||||
Sbjct 942 ACTTTGACCAGGTCAAACCTGCTCTTCCCGCCCTTGAACGACTAATTCATTCAGA-TGAT 1000
Query 733 GAACAAGTCTTGACAAATGCTTGTTGGGCTCTCAAATCCCTCTCTGGTGGGACTAATGAC 792
||| ||||||||||| |||| ||||||||||| | |||||||| |||||| ||||||
Sbjct 1001 GAAGAAGTCTTGACAGATGCCTGTTGGGCTCTTTCTTACCTCTCTGATGGGACCAATGAC 1060
Query 793 AAAATCCAGAATGTCATCGAGGCCGGTGTTGTACCAAGACTTGTTGAACTTCTCCTCCAT 852
|||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1061 AAAATCCAGACTGTCATCCAGGCCGGTGTTGTCCCAAAACTTGTTGAACTTCTCCTCCAT 1120
Query 853 CCTTCTATATCTGTGGTAATTCCTGCGCTTCGCACAGTTGGAAATATAGTTACTGGAGAT 912
| |||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1121 CATTCTCCATCTGTGCTAATTCCTGCTCTTCGCACTGTTGGAAATATAGTTACTGGAGAT 1180
Query 913 GATCTACAAACGCAGTGTGTGAT-AGATAGTGGTGCTTTACCTTGTTTTGTCAACCTTCT 971
||| ||||||| ||||| ||||| | ||||||||||| |||||||| ||| |||||| ||
Sbjct 1181 GATATACAAACACAGTGCGTGATCA-ATAGTGGTGCTCTACCTTGTCTTGCCAACCTGCT 1239
Query 972 AACTCAAAACTATAAGAAAAATATTAAGAAGGAAGCTTGTTGGACGATTTCGAACATCAC 1031
||||||||| ||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 1240 CACTCAAAACCATAAGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCAC 1299
Query 1032 AGCAGG-AACACATGAACAGATCCAGATGGTAATAGAGTCTAATTTGATTGCCCCCTTAG 1090
|||||| |||| | || |||||||||| |||| | ||| ||||||||||| |||| || |
Sbjct 1300 AGCAGGCAACAAA-GATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTTCCCCGTTGG 1358
Query 1091 TTAATCTG-TGTCAATATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAATTTCC 1149
| | |||| | |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1359 TGAGTCTGCT-TCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCA 1417
Query 1150 AATG 1153
||||
Sbjct 1418 AATG 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5