BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474779
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family prot... 4167 0.0
> AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:20534874-20539113 FORWARD LENGTH=2783
Length=2783
Score = 4167 bits (2256), Expect = 0.0
Identities = 2541/2677 (95%), Gaps = 25/2677 (1%)
Strand=Plus/Plus
Query 1 GGCTGCTTCTGCAACCTAAAAATGGCTTCTTCAATCTCTCTTCTTCTCATCAAACGCATC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GGCTGCTTCTGCAACCTAAAAATGGCTGCTTCAATCTCTCTTCTTCTCATCAAACGCATC 60
Query 61 TCTCACTTCCACATAAACCCTAAAAGCCGCCGACTTTTCCAACAATTTCTCACAAAATCA 120
|||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| ||||||
Sbjct 61 TCTCACTTGCACATAAACCCTAAAAGCCACCGACTTTTTCAACCATTTCTCACTAAATCA 120
Query 121 CTCTCTACTTCTCCACAAAGCAACACTGATTCAACCCTTGAACCTAACCACAAACCCTCT 180
||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 121 CTCTCTACTTCTCCACAAAGCAACACTGAATCAACCCATGAACCTAATCACAAACCCTCT 180
Query 181 TCTCTCTCTTCTCGTCTTAGCTTCGTATTCGATCAAATTGATGCTATTGAGAAACGTCAC 240
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 181 TCTCTATCTTCTCGTCTTAGCTTCGTTTTCGATCAAATCGATGCTATTGAGAAACGTCAC 240
Query 241 TCTGAGAAAGACGAAACCCTTGAGCGTATTCGTGCTTGGCGTCAATCTAAACAAACCCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TCTGAGAAAGACGAAACCCTTGAGCGTATTCGTGCTTGGCGTCAATCTAAACAGACGCAT 300
Query 301 CAGTCAAAAACACCAT-CTTCTGCTCCACAACAACAAGATCCGGATCATAGAGAAGTTGA 359
|||| |||||| || | |||||||| | | ||||||||||||||||| ||||||||| ||
Sbjct 301 CAGTTAAAAACTCC-TCCTTCTGCT-C-C-ACAACAAGATCCGGATCTTAGAGAAGTCGA 356
Query 360 ATCTGTAGTGTCTAATGAGGAATTGGATTCTTGTGTTGTGGTTGAGTCGAGTCAGGTTGA 419
||| || ||||||||||| |||||||||||||||||||| ||||| ||| |||| ||||
Sbjct 357 ATCCGTTGTGTCTAATGATAAATTGGATTCTTGTGTTGTGCTTGAGCCGATTCAGATTGA 416
Query 420 TTCTGGTGAGTTGAGTAAGGAGAAGGGTGTGGTTGAGTTGGTGCATCCATGGCCGGAGTG 479
|||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 417 TTCTGGTGAGTTGAGTAAGGAGAAAGGTGTTATTGAGTTGGTCCATCCATGGCCGGAGTG 476
Query 480 GATGGAGTTGATGGAGAGATTGGTGAAGCAGAATTACTTTGATCATAGGAGAGAAAGAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGGAGTTGATGGAGAGATTGGTGAAGCAGAATTACTTTGATCATAGGAGAGAAAGAGA 536
Query 540 TGATGATGAGATGGTGAATAGTTTGGGGATTGATGTGTCTAATGTTGGATTAGGTGAAGA 599
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 TGATGATGATATGGTGAATAGTTTGGGGATTGATGTGTCTAGTGTTGGATTAGGTGAAGA 596
Query 600 AGAGAATGTTGGAGTTGCTTTGTTTCAGGATTTTAGAGCTGTTCAAAATGCTTGTATCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 TGAGAATGTTGGAGTTGCTTTGTTTCAGGATTTTAGAGCTGTTCAAAATGCTTGTAGCAA 656
Query 660 TTTCGGAAAAGACCGGTTCGATATTCTAAGGTCATTGTCGAGAAATGACATTCAAATCCT 719
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTTTGGTAAAGACCGTTTCGATATTCTAAGGTCATTGTCGAGAAATGACATTCAAATCCT 716
Query 720 AGTGGGTCATGGATGCCCTGCAACTGATAGAAAGGTGGTTTTCTCTGGAAAACTACTGAG 779
||| ||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 717 AGTCGGTCATGGATGTCCAGCGACTGATAGAAAAGTGGTTTTCTCAGGAAAACTACTGAG 776
Query 780 GAAGCGTGTCCATCTCGATGAAGGAGATGTCTGCAGTTCCTGCAGCTTGAGGAACTCATG 839
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GAAGCGTGTTCATCTTGATGAAGGAGATGTCTGCAGTTCCTGCAGCTTGAGGAACTCATG 836
Query 840 CGAAAAGGCGTTTTTGCTGACAAACAAAGAGGATGAGGCTCGAACCATTGACCTGATGCG 899
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 CGAAAAGGCATTTTTGTTGACAAACAAAGAGGATGAGGCTCGAACCATTGACCTTATGCG 896
Query 900 CATTTTGTTCACCTATGGTTTTGATCCATTGAAT-GATACAGTGGCCAACAAAAATCTCC 958
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 897 CATTTTGTTCACCTATGGTTTTGACCCATTGAATGGA-ACAGTGGCCAACAAAAGTCTCC 955
Query 959 TGAAGAAAAAGTCTGTTAAGACTGTGGTGCGTAAACTGCTGCATGAGATTGTCAAATTAA 1018
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 956 TGAAGAAAAAGTCTGTTAAGTCTGTGGTGCGTAAACTGCTGCATGAGATTGTCAAGTTAA 1015
Query 1019 GCGCTGTACCAATAGATCCTAATCTTACTCCACCAATTATCAAGAGAGCGCCCCCTAAAG 1078
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1016 GCGCTGTACCAATAGATCCTAATCTCACTCCACCAGTTATCAAAAGAGCGCCCCCTAAAG 1075
Query 1079 TCAAGCAGCCACCGCCACCTCCTAAACGACGTGTTGGCCGTGATGACGTTGAGATGAAGA 1138
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1076 TCAAGCAGCCACCGCCAACTCCTAAACGACGTGTTGGCCGTGATGATGTTGAGATGAAGA 1135
Query 1139 AAGGAGATTGGCTGTGCCCAAAGTGCGATTTCATGAACTTCGCAAAGAACACGATTTGCT 1198
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 AAGGAGATTGGCTATGCCCAAAGTGCGATTTCATGAACTTTGCAAAGAACACGATTTGCT 1195
Query 1199 TACAGTGTGATGCAAAGAGGCCAAAGAGACAGCTCCTTCCAGGAGAATGGGAATGCCCTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TACAGTGTGATGCAAAGAGGCCAAAGAGACAGCTCCTTCCAGGAGAATGGGAATGCCCTG 1255
Query 1259 AATGCAACTTCTTAAACTATAGGAGAAACATGGCATGTTTTCATTGTGATTGCAAGCGTC 1318
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1256 AATGCAACTTCTTAAACTATAGAAGAAACATGGCATGTTTTCATTGTGATTGCAAGCGTC 1315
Query 1319 CAGCGGATGCTATCCTAGAGAACAAAACAGAAGATACTCATCGCTTCACTGAAGCACAAA 1378
|||| ||||||||||||||||||||| || |||| ||| |||||||||||||||||||||
Sbjct 1316 CAGCTGATGCTATCCTAGAGAACAAACCACAAGAAACTTATCGCTTCACTGAAGCACAAA 1375
Query 1379 CCGACAGGGTTGTGAAGCGGGATGATGTTTCCAATGCATGGAACTTTGATTTTGATGACG 1438
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CAGACAGGGTTGTGAAACGGGATGATGTTTCCAATGCATGGAACTTTGATTTTGATGACG 1435
Query 1439 ATGAATCAGATGGAGCAGAAGTTGCTGCGTTTGAATATGCGGATTCCAGTAAAAAGAATG 1498
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1436 ATGAATCAGACGGAGCAGAAGTTGCTGCTTTTGAATATGCGGATTCCAGTAAAAAGAATG 1495
Query 1499 AAAACGTACTCCGGGAGGGTTTGAGAGATCCTGAAGAAGAATTTGGTAATCTTCCTCCAG 1558
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAAACCTTCTCCGGGAGGGTTTGAGAGATCCTGAAGAAGAATTTGGTAATCTTCCTCCAG 1555
Query 1559 GAGCCCGAGAAAGTTCTGAGTTTGGCAGAAGCAGAAGACCTGGAGTTGGGTTTGATGATT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GAGCCCGAGAAAGTTCTGAGTTTGGCAGAAGCAGAAGACCTGGAGTTGGGTTTGATGATT 1615
Query 1619 TTGACGATGAAGATGACATTGATAGCTATGAAATAGACGAATCTGGAGAGAGAGAGGTCC 1678
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1616 TTGACGATGAAGATGACATTGATAGCTATGAAATAGACGAATCTAAAGAGAGAGATGTCC 1675
Query 1679 CAGTGGAAGGAGCCCGACCTTCTTTTCCTTCTGACGAGTTCTCAGAGGATGAAAAGTTTC 1738
||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1676 CAGTGGAAGGAGCTCGATCTTCTTTTGCTTCTGACGAGTTCTCAGAGGATGAAAAGTTTC 1735
Query 1739 TGGAATCAAAGGCTGGTTTTAATGCACACAGAGGAGGAAGTTCAAACCTTCACAACAGTA 1798
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1736 CAGAATCAAAGTCTGGTTTTAATGCACACAGAGGAGGAAGTTCAAACTTTCACAACAGT- 1794
Query 1799 GGAA-GAAGCATGGAAACAGTAAGGGAGGTTTCTCTAGGGATGATGAGCTCGGTTTCAGT 1857
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1795 GGAAAGAAGCATGGAAACAGTAAGGGAGGTTTCTCTAGGGATGATGAGCTCGGTTTTAGT 1854
Query 1858 TCAGATGATGAGGTTTCCGCCAATCCCAGGTGGAAATCAAGCCATGTTGCTTCGACCCAG 1917
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1855 TCAGATGATGAGGTTTCCGCCAATCCCAGGTGGAAGTCAAGCCATGTGGCTTCGACCCAG 1914
Query 1918 AGAGGTCCACCTTCGAGAAAACTTACTTTTGGGTCGGACGAAGAATTTGGGCTCGATTCT 1977
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1915 AGAGGTCCACCTTCGAGAAAACTTACTTTTGGGTCAGACGAAGAATTTGGGCTCGATTCT 1974
Query 1978 GATCTGGAGGACGATAGTCCAAGGTCCGGTTTGAGGCGTGGACAAAGAAACAACGGTGCT 2037
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GATATGGAGGATGATAGTCCCAGGTCCGGTTTGAGGCGTGGACAAAGAAACAACGGTGCG 2034
Query 2038 AGAGG-G--TTCAAGGGAAAACGAAGCTCCTATTCAGCTTCAGAATCTGATGATGACATG 2094
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 AGAGGAGGGTTCAAGGGAAAACGAAGCTCCTATTCAGCTTCAGAATCTGATGATGACATG 2094
Query 2095 GATGATCAAAAGTACAGAGGGTCAAGTTTCTCTGGTAATAGATCGAGAGGAAGCAGAGGA 2154
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2095 GATGATCAAGAGTACAGAGGGTCAAGTTTCTCTGGTAATAGATCGAGAGGAAGTAGAGGA 2154
Query 2155 AGAATGAGAGGCGGAGGACGGGGTGGTTTCGGTGATAATTTTGCCTCTGATAGCTACAGG 2214
||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2155 AGAATGAGAGGTGGAGGACGAGGTGGTTTCAATGATAATTTTGCCTCTGATAGCTACAGG 2214
Query 2215 GGATCAAGTGGCTCCTCGGCTAATAGATCAAGAGGGAGAGGAGGAAGAACAGGAACCAGA 2274
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2215 GGATCAAATGGCTCCTCGGCTAATAGATCAAGAGGGAGAGGAGGAAGAATAGGAAGCAGA 2274
Query 2275 AGGAGTAGTTTTGATAGTGACGATGAAGATTACAGAGGGTCAAGTTCCTCAGCCAGTAGA 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2275 AGGAGTAGTTTTGATAGTGACGATGAAGATTACAGAGGGTCAAGTTCCTCAGCTAGTAGA 2334
Query 2335 TCAAGAGGGAACAGAGAAGATAGTGGCGGGTTTGGGGGAAGAATGGGAAGCAGAAGAGGC 2394
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2335 TCAAGAGGTAACAGAGAAGATAGTGGCGGGGTTGGGGGAAGAATGGGAAGCAGAAGAGGC 2394
Query 2395 GGTTTTGATGA-G--TTTGATAGAAAGGGTAGCCGAGGACGCGGCTCAGGTAGTTTCAGG 2451
||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2395 GGTTTTGATGATGAGTTTGATAGAAAGAGTAGCCGAGGACGCGGTTCAGGTAGTTTCAGG 2454
Query 2452 GGATCAAACAGAGGAGGAAGAGGAGGAGGA--A--A-----CCGGCATGGGCATAGTGAT 2502
||||| |||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 2455 GGATCTAACAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAACCGGCATGGGCATAGTGAT 2514
Query 2503 GGTAAAGACACAGACGTTGGAGATTTCAGAAACAGTCGAAGAGTTATCGAGAGATAGAGA 2562
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2515 GGTAAAGACACAGACGTTGGTGATTTCAGAAACAGTCGAAGAGTTATCGAGAGATAGAGA 2574
Query 2563 TGTAAACTGATATCATCAGATATT-ACTCTATACTTCTATCCAGTATCCAATTGGCTATA 2621
||||||||| | |||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 2575 TGTAAACTGGTCTCATCAGATATTTACTTTATACTTTTATCCAGTATCCAATTGGCTATA 2634
Query 2622 GTGCATTAGTTCACTCATAATATCATTTTCTGTTATT 2658
||||||||||||| ||||||||||| |||||||||||
Sbjct 2635 GTGCATTAGTTCAGTCATAATATCAATTTCTGTTATT 2671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131989227033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5