BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474781
Length=2935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2146 0.0
AT1G09050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 505 1e-141
AT1G09040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 472 1e-131
> AT1G55050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G09040.1); Has 2440 Blast hits to 1999
proteins in 271 species: Archae - 0; Bacteria - 138; Metazoa
- 960; Fungi - 166; Plants - 162; Viruses - 14; Other Eukaryotes
- 1000 (source: NCBI BLink). | chr1:20541887-20545762
FORWARD LENGTH=3022
Length=3022
Score = 2146 bits (1162), Expect = 0.0
Identities = 1533/1705 (90%), Gaps = 53/1705 (3%)
Strand=Plus/Plus
Query 1 AAGTGATCTCTCTCTGTCTT-TCTCCACAAAGAACCGAAACTTGTTGGGTCTTTCATTG- 58
||||||||||||||| | || ||||||||||||||||||||||||| |||||||| |||
Sbjct 1 AAGTGATCTCTCTCTCT-TTCTCTCCACAAAGAACCGAAACTTGTTCGGTCTTTCGTTGC 59
Query 59 ----CCTCACTAGGAGAAATCTCACTGCCAATGCAAAGCTGAAACCTCTCTTT----CAG 110
||||||| ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 60 CTCTCCTCACTCGGAGAAATCTCACTGCCAATGCAAAGCTGAAACATCTCTTTCAGACAG 119
Query 111 TTCTTATAATGGATGAGGAAAGCAATCCTATGGAAGATTCTTGTGATGAAGAATTTGTCT 170
||||||| ||||| || |||| || | |||||||||| ||||||||||||||||| || |
Sbjct 120 TTCTTATGATGGAAGAAGAAAACAGTTCTATGGAAGAGTCTTGTGATGAAGAATTCGTTT 179
Query 171 GCGGAGATCCGAAAGTTGATGTTCGTGTTGGAGATGAATATCAGGTTGAGATACCTCCTA 230
| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GTGGAGATCCAAAAGTTGATATTCGTGTTGGAGATGAGTATCAGGTTGAGATACCTCCTA 239
Query 231 TGATCTCTGAATCCCAACGTGCAGCGCTTCTTTTGAATCCTCTGGACTCTGATTCCTCTT 290
|||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 240 TGATGTCTGAATCCCAACGTGCAGAGCTTCTTTTGAATCCTCTGGAATTTGATTCCTCTT 299
Query 291 GTTCCTTTGCTGTGGGACTACCTGTCGAAGTAATGTGGATAGACACCAAATGTAGAGATA 350
|||| |||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 300 GTTCTTTTGCTGTGGGACTACCTGTTGAAGTAATGTGGATCGAGACAAAATGTAGAGATG 359
Query 351 GAGATGGACTTGGAAGTGATAACATCGACATGAACGAATCTCTCAAATCACTTAAAACAA 410
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 360 GAGATGGACTTGGAAGTGATAACATTGACATGAACGAATCTCTCAAATCTCTTAAAAGAA 419
Query 411 AAAGAAGCCGCAGAGGTGGGAGTGACGGGAACCCGGGAGCTAAGCAACATATGAATCTTG 470
||||||| |||||||||||||||||||||||| |||| |||||| || |||||||||||
Sbjct 420 AAAGAAGTCGCAGAGGTGGGAGTGACGGGAACTCGGGTTCTAAGCGACGTATGAATCTTG 479
Query 471 AAGTTGTGCCTGAGAAATCATCCAGTTCTTGGGAAGATTTGGAAGTAGATGGATTTGTTC 530
||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 480 AAGCTGTGCCTGAGAAATCGTCCAGTTCTTGGGAAGATTTGGAAGTAGATGGGTTTGTTC 539
Query 531 TTGGGCTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAG 590
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGACTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAG 599
Query 591 AAACAGGAGATATACTTTTGTTTTACTACGGAAAGTTTTACGAATCTGCTAAATACAAAA 650
||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 600 CAACAGGAGAGATACTTTTGTTTTACTATGGAAAGTTTTATGGTTCTGCTAAATACAAAA 659
Query 651 TTTGGTCTAATTCTCTTAAGAAGCGGAGCAGGAGATGCATACAAGGGAAGAAGCTCTATT 710
||||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 660 CTTGGTCTAATTATCTTAAGAAGCGGAGTACGAGATGTATACAAGGGAAGAAGCTCTATT 719
Query 711 CAGATTGGAGGCTACAGTTGTTGTTGTCCCGTTTAATTCGCAACATTCCCGATGAA-CTG 769
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| | |
Sbjct 720 CAGATTGGAGGCTACAGCTGTTGTTGTCCCGTTTAATTCGCAGCATTACCGATGAATC-G 778
Query 770 AAAGAACAGAAGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAGTCTCTGGAG 829
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 AAAGAACAGAAGCTAGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAATCTCTGGAG 838
Query 830 GAATACATCAACGCGGTTAAGGAACTAGTGGGTCTCCGGTATCTTTTAGAGGCTGTAGCA 889
||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||
Sbjct 839 GAATACATCAACGCGGTTAAGAAACTAGTGGGTCTTCGGTGTCTTGTAGAGGCTGTAGCA 898
Query 890 ATTGGTAAAGATAAGGAAGATCTGACAGTCCTCACAATAGAACCCGAAAATGCAAAACAA 949
|| ||||||||||||||||||||||||||||| |||| | |||||| | ||| | |||||
Sbjct 899 ATCGGTAAAGATAAGGAAGATCTGACAGTCCTTACAACAAAACCCGTAGATGTAGAACAA 958
Query 950 TGGTTTACAGTTTCTTCTGCGGTTCCTGCTGGTTTAGGGGAATACAGTTCACTCACAGTT 1009
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 959 TGGTTTAGAGTTTCTTCTGCGGTACCTGCTGGTTTAGGGGAATACAATTCACTCACAGTT 1018
Query 1010 GAAGGTATAATCGAAAAATTGACTGGTTGTTCCCGTCTGATAAAAGGTCGTTACAATGAT 1069
||||||||||||||||||||| ||||| |||||||| ||| |||| ||||| |||||||
Sbjct 1019 GAAGGTATAATCGAAAAATTGTCTGGTGGTTCCCGTGTGAGCAAAGCTCGTTGCAATGAT 1078
Query 1070 ATCTTCTGGGACGCTGTATGGCCGCGTTTGCTACATAGGGGGTGGCGTTCTGAGCAGCCA 1129
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1079 ATCTTCTGGGATGCTGTATGGCCGCGTTTGCTACATAGGGGTTGGCGTTCTGAGCTGCCA 1138
Query 1130 AAGGACCGAAG-TTACATCAAGTCTAAAGACCACATTGTCTTCCTCGTCCCTGGGGTAAA 1188
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 AAGGACC-AAGGTTACATCAAGTCTAAAGAACACATTGTCTTCCTCGTCCCTGGGGTAAA 1197
Query 1189 GAAGTTTTCAAGACGGAAACTTGTGAAACATGATCATTACTTTGATTCTATCAGTGACAT 1248
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 GAAGTTTTCAAGAAAGAAACTTGTGAAACGTGATCATTACTTTGATTCTATCAGTGACAT 1257
Query 1249 TCTCAAAAAGGTTGTTTCTGAGCCTGAGCTTCTTGAGGAGACAGCAGAGATCAGAGCTCC 1308
|||||||||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 1258 TCTCAAAAAGGTTGTTTCAGAGCCTGAGCTTCTTGAGGAGACAGCAGA-AG-A-AG---- 1310
Query 1309 TGATGGAATCATCCAAGAGAACACTTGCAACCAATCAAAACAGGAGAAACACTGTTACCT 1368
| || | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1311 --A---AAG-AG--AAGAGAACACTTACAACCAATCAAAACAGGAGAAACACTGTTACCT 1362
Query 1369 GAGGTCTCCAAACTCTTCTTCTACTCATATGAAGTTCACTGTTGTGGACACTAGTCGTTT 1428
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CAGGTCTCCAAGCTCTTCTTCTACTCATATGAAGTTCACTGTTGTGGACACTAGTCGTTT 1422
Query 1429 GGCTTCAGGAGGAAATTTGTTCAAATGCCGGGAGTTGAGGATTCCAAATCCAGAATATCT 1488
|||||| ||||||| |||| | ||| ||||||||||||||||||| | | | |
Sbjct 1423 TGCTTCAAGAGGAAAGTTGTACGAATTTCGGGAGTTGAGGATTCCAA-----G--T-T-T 1473
Query 1489 AGCTTCTCAATCGATGGCTTGTCGAGGGGATAACAATTCTTCTGTGGAAAGATTCCAAAC 1548
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1474 AGCTTCTCAATCAAAGGCTTGTCGAGGGGATAACAACTCTTCTGTGGAAAGATTC-AAGT 1532
Query 1549 AATGCCGTTGGAAGTACACAAGCGTAAGTGGGAAAGGCCGCGAAAGATGAAACAGGTGGA 1608
||| | | | | | || | |||||| ||||| || ||||||| || ||||||
Sbjct 1533 T-TGC--T-G-ATG-A-AC--G--TAAGTGTAAAAGGAAGCAAAAGATGGAAGTGGTGGA 1581
Query 1609 TGAACCGATGAAATTCATGATTCTGGATACAAGTGTGGAGCAA-GGTGGGCATTCATCCG 1667
||||||||||| |||| |||||||||||||||||||||| ||| ||||||||| |||| |
Sbjct 1582 TGAACCGATGACATTCTTGATTCTGGATACAAGTGTGGA-CAAAGGTGGGCATACATCTG 1640
Query 1668 GGATAAGAAGACGGAGACATTTGCC 1692
|||||||||||||||||||||||||
Sbjct 1641 GGATAAGAAGACGGAGACATTTGCC 1665
Score = 859 bits (465), Expect = 0.0
Identities = 642/725 (89%), Gaps = 21/725 (3%)
Strand=Plus/Plus
Query 2124 ATGAACTAAGTTCACCAGCACAACAAAAAGAACCAAATGGGTTAT-GT--TCAAAGGACC 2180
|||||| || ||||| |||||||||| |||||||||||||||||| | ||||| || |
Sbjct 2172 ATGAACCAATTTCACTAGCACAACAACAAGAACCAAATGGGTTATATTCATCAAAAGAAC 2231
Query 2181 AAGGAGGTCTGCATGAACTCAGTTCATCAGAACAACAACAAGACGAATCAAATCGGTTGG 2240
|||||| | | ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2232 AAGGAGCTTTTCATGAACACAGTTCAACAGAACAACAACAAGACGAATCAAATCGGTTGT 2291
Query 2241 GTTTAGACAAAAAATGCTCTTCCAAGGATCTTGAAACTGCCCAAAAACAAGAGCAACCGA 2300
|||| ||||||| |||||||||||||||||| | |||||| |||||| ||||||||||||
Sbjct 2292 GTTTGGACAAAATATGCTCTTCCAAGGATCTGGGAACTGCTCAAAAAGAAGAGCAACCGA 2351
Query 2301 TTCAGTTGCCTCCCAA---A-----A-ACAAGAATTCTCCATCCACTGATCATGGAACTA 2351
||||||||||||| || | | ||||||||||||| |||| |||||||||||||
Sbjct 2352 TTCAGTTGCCTCCTAAGTCAGCCTCAGACAAGAATTCTCCGTCCAGAGATCATGGAACTA 2411
Query 2352 CTCAAGAACGTGCATCATTAGAACAACAAGAAGAAGAGCATAACCAACAGACCGACACAG 2411
|| |||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
Sbjct 2412 CTGAAGAACGTGCATCATTAGAACAACAAGAAGAAGAGCATAAACAACAGGCCAACACGG 2471
Query 2412 ACATTCCAAGAAGACAAAGCACAAGAAAGCGGCCATTGACTACTCGTGCTCTGGAAGCTC 2471
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2472 ACATTCCAAGAAGACAAAGCACAAGAAAGCGGCCGTTGACTACTCGTGCTCTGGAAGCTC 2531
Query 2472 TAGAATCGGGCTTTTTTACACCAAAAAGCATGAAAACTACTACATCTAAACCGAGAAAAC 2531
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2532 TAGAATCGGACTTTTTTACACCAAAAAGCAAGAAAACTACTACATCTAAACCGAGAAACC 2591
Query 2532 GCAAACGGTCTGCAAATATCAAGCATTCAGCCAATGCGAGTAACAAAACTCCACGCGAGT 2591
|| |||| ||||||| |||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 2592 GCGAACGTTCTGCAAGGATCAAGCACTCAGCCAATGCGAATAACAAAACTCCAGGCGAGT 2651
Query 2592 CAGACAATGGATATCTTGTAAAGGAAGCGACAACAAATAAACCGCTGGACCTGGACCAAA 2651
|||||||| | | || ||||||||| |||| ||||| ||||||| | | | ||||||
Sbjct 2652 CAGACAATAGTTTTCATGTAAAGGAGGCGATAACAAGTAAACCG-TC-A---G-ACCAAA 2705
Query 2652 TAAAGGATTCTGAACCAAGCTTTCTTGTGGATAAAGTAACGACGACAA--A-TAAGCATG 2708
|||||||||| ||||| |||||||||||||||||||||||| ||||| | ||||||||
Sbjct 2706 TAAAGGATTCCGAACCGAGCTTTCTTGTGGATAAAGTAACGGTGACAAGTAGTAAGCATG 2765
Query 2709 TGGAAGAAATAGAGGATTCGAAGAAGGTGACTACCGAGTTCCCTAAACTTCCTCCAATTG 2768
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2766 TGGAACAAATAAAGGATTCGGAGAAGGTGACTACCGAGTTCCCTAAACTTCCTCCAATTG 2825
Query 2769 TTTTGAAACTTCCCTTTAAGTGTGACTGAAGATGCGGTGAATACTGAAGTCTGAATCATT 2828
|||||||||||||||||| | ||| || |||| || |||| ||||||||||||||||||
Sbjct 2826 TTTTGAAACTTCCCTTTAGGCGTGGCTCAAGAAGCAATGAAGACTGAAGTCTGAATCATT 2885
Query 2829 TTTTG 2833
|||||
Sbjct 2886 TTTTG 2890
Score = 324 bits (175), Expect = 4e-87
Identities = 251/286 (88%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 1733 AAAGAGGCATTTGGTGAATCATCACAGAACCAATCTCGCAGTAATAAAGGTGTGAAGGGC 1792
|||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||
Sbjct 1667 AAAGAGGCATTTGGTGAATCATCACAGAACCAATCTGGCACTAGTAAAGATGTGAACTGC 1726
Query 1793 AAGCATCCTATGGGGACTGATTCTGGTCTAGGGGAGGAGACTTTGGAGAATGTCCAACAA 1852
|| ||| || |||||||||| ||||| ||| ||| ||||||||||||||||||||||||
Sbjct 1727 GAGTATCTTAAGGGGACTGATCCTGGTGTAGAGGAAGAGACTTTGGAGAATGTCCAACAA 1786
Query 1853 GGTCGGTCAAAGAAGATCAAGCAGAGGTATT-CCCGAATATCAGAATCTAATAACCATCA 1911
||||||||||||||||| ||||||| || || ||| | |||||||||||||||| | |||
Sbjct 1787 GGTCGGTCAAAGAAGATTAAGCAGAAGT-TTGCCCTATTATCAGAATCTAATAAACGTCA 1845
Query 1912 TTCGGTT----C-C--C--TTGCCAAAACGTAGGCGGCTCAGTACTTGTGTAAGGAAAGA 1962
|| |||| | | | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1846 TTTGGTTGGTTCTCTTCCCTTGCGAAAACGTAGGCGGCTCAGTACTTGTGTAAGGAAAGA 1905
Query 1963 TATAAAACGTTCTGGTGAAAGTTCAGTGTTGAAGCCACCTGCATTA 2008
|| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1906 TAGAAAACGTTCTGGTGAAAGTTCAGTGTTGAAGCCACCTCCATTA 1951
> AT1G09050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09040.1);
Has 552 Blast hits to 499 proteins in 115 species: Archae
- 0; Bacteria - 86; Metazoa - 259; Fungi - 14; Plants - 77;
Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). |
chr1:2918031-2920889 FORWARD LENGTH=2782
Length=2782
Score = 505 bits (273), Expect = 1e-141
Identities = 907/1201 (76%), Gaps = 92/1201 (8%)
Strand=Plus/Plus
Query 143 GAAGATTCTTGTGATGAAGAATTTGTCTGCGGAGATCCGA-AAGTTGATG-TTCGTGTTG 200
||||| || | |||||| || ||| |||||||||||| | ||||||| | ||||||||
Sbjct 61 GAAGACTCCTATGATGACGAGTTTCCCTGCGGAGATCC-ACAAGTTGA-GCCTCGTGTTG 118
Query 201 GAGATGAATATCAGGTTGAGATACCTCCTATGATCTCTGAATCCCAA-CGTGCAGCGCTT 259
||||||||| |||||| || || |||| |||||| |||| || |||| || || | | ||
Sbjct 119 GAGATGAATTTCAGGTCGACATTCCTCTTATGATGTCTGCAT-CCAAGCGCGCTGTGTTT 177
Query 260 CTTTTGAATCCTCTGGACTCT-GAT--TCCT-CTTGTTCCTTTGCT-GTGGGACTACCTG 314
|||| |||||| | | || | ||| | || | |||| |||| || || || |||||||
Sbjct 178 CTTTCCAATCCTGTTG-CTTTGGATGATTCTACATGTT-CTTTTCTCGTCGGTCTACCTG 235
Query 315 TCGAAGTAATGTGGATAGACACCAAATGTAGAGATA-GAGATGGACTTGGAAG-TGATAA 372
|| |||||||||||||||||| || | | || ||| || | ||| ||| || || ||
Sbjct 236 TCCAAGTAATGTGGATAGACA--AAGT-TGGA-ATAGGACAAGGAAATGG-AGATGGCAA 290
Query 373 CATCGACATGAACGAATCTCTCAAATCACTTAA-AAC--AAAAA----GAAGC-C-G-C- 421
| ||||||||| ||||| | ||||| |||| | | ||||| | || | | |
Sbjct 291 TGTTGACATGAACCAATCTTTGAAATC-TTTAAGAGCTAAAAAAGGCCGTTGCTCTGCCA 349
Query 422 AGA--GGTGG---GAGTGACGGGAACCCGG-GAGC--TAAGCAACATA-TGAATCTTGAA 472
||| | || ||||||| ||| ||| | | |||||| | | ||||||||||
Sbjct 350 AGATCAGAGGAAAGAGTGACAAGAATTCGGAAACCAAGAAGCAA-AGACTGAATCTTGAG 408
Query 473 GTTGTGCCTGAGAAATCATCCAGTTCTTGGGAAGATTTGGAAGTAGATGGATTTGTTCTT 532
| ||| |||| || | | |||||||||||||| |||||||| || | | | |||||||||
Sbjct 409 GCTGTTCCTGCGATACCTTCCAGTTCTTGGGACGATTTGGAGGTTGCTAGCTTTGTTCTT 468
Query 533 GGGCTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAGAA 592
|| ||||| |||||||||||||||||| ||||| || | || || | |||| ||||| |
Sbjct 469 GGTCTGTACACATTTGGGAAGAACTTTACTCAGATGAATAATTTCATGGAGAACAAAGGA 528
Query 593 ACAGGAGATATAC-TTTTGTTTTACTACGGAAAGTTTTACGAA-TCTGCTAAA-TACAAA 649
| |||||| || | | ||||||||||| || ||||| ||| || ||||| ||| ||| |
Sbjct 529 ATAGGAGAGAT-CATGTTGTTTTACTATGGGAAGTTCTAC-AATTCTGC-AAAGTACCAC 585
Query 650 ATTTGGTCT-AATTCTCTTAAGAAGCGGAGCAGGAGATGCATACAAGGGAAG-AAGCTCT 707
| ||||||| || || | |||||||| | | | | ||| || | ||||| |||||||
Sbjct 586 ACTTGGTCTGAA-TCCCGAAAGAAGCGCAACCGCAAATGTGTA-TATGGAAGAAAGCTCT 643
Query 708 ATTCAGATTGGAGGCTACAGTTGTTGTTGTCCCGTTTAATTCGCAAC-ATTCCCGATGAA 766
|||||| |||||||| ||| |||||| ||||||| || | | | ||||| ||||||
Sbjct 644 ATTCAGGTTGGAGGCAACAACAGTTGTTAACCCGTTTGATGC-CTTCTATTCCTGATGAA 702
Query 767 -CTGAAAGAACAGAAGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAGTCTCT 825
|| | | |||||| ||||||||||||||||||||||||||||||||| | | ||||
Sbjct 703 CCTCAGA-AACAGATGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGTACTATCACTCT 761
Query 826 GGAGGAATACATCAA-CGCGGTTAAGGAA-CTAGTGGGTCTCCGG-TATCTTTTAGAGGC 882
||| ||||| | || ||| || ||| || || ||||||||| || | ||| |||| ||
Sbjct 762 AGAGAAATACGT-AAGCGCAGTGAAG-AATCTTGTGGGTCTCAGGCT-TCTGGTAGACGC 818
Query 883 TGTAGCAATTGGTAAAGATAAGGAAGATCTGACAGT-CCTCACAATAGAACCCGAA--AA 939
||| || ||||||||||| || |||||||| || || ||| ||| | ||||| || ||
Sbjct 819 TGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTCCT-ACA-TC-AACCCCAATGAA 875
Query 940 TG-CAAAACAATGGTTTACAGTTTCTTCTGCGG-TTCCT-G--C--TGGTTTAGGGGAAT 992
| | |||| |||||| || |||||||| ||| | | | ||| |||||| |
Sbjct 876 -GACCAAACCATGGTTCACTGTTTCTTCAAAATCTTCTTTGGTCCCTGGAGAAGGGGATT 934
Query 993 ACAGTTCACTCACAGTTGAA-GGTATAATCGAAAA-A-TTGACTGGTTGTTCCCGTCTGA 1049
||| ||| |||||| | | || ||||| ||| | || ||||| ||||| |||||||
Sbjct 935 ACAATTCCCTCACA-TCGGCTGGCATAAT--AAATCAGTTAACTGGCTGTTCTCGTCTGA 991
Query 1050 TAAAAGGTCGTTACAATGATATCTTCTGGGACGCTGTATGGCCGCGTTTGCTA-CATAGG 1108
|||| |||| ||||||||| ||||||| |||||||||||||||||||||| | ||
Sbjct 992 GCAAAGCCCGTTGCAATGATATATTCTGGGGCGCTGTATGGCCGCGTTTGCTAGCC-AGA 1050
Query 1109 GGGTGGCGTTCTGAGCAGCCAAAGGACCGAAGTTACATCAAGTCTAAAGACCACATTGTC 1168
|| |||||||| ||||||| |||||||| | || |||| ||||| ||| |||||||
Sbjct 1051 GGATGGCGTTCACAGCAGCCCGAGGACCGAGGCTATTTCAAATCTAAGGACTACATTGTT 1110
Query 1169 TTCCTCGTCCCTGGGGT-AAAGAAGTTTTCAAGACG-GAAACTTGTGAAAC-ATGATCAT 1225
||| | |||||||| || ||| ||||||||||||| || ||||| ||| | ||||||
Sbjct 1111 TTCATTGTCCCTGGCGTGAAA-AAGTTTTCAAGACAAGAG-CTTGTCAAAGGA-GATCAT 1167
Query 1226 TACTTTGATTCTATCAGTGACATTCTCAA-AAAGGTTGTTTCTGAGCCTGAGCTTCTTGA 1284
||||||||||| ||||||| ||||| || ||||||||| || |||||||| ||||||||
Sbjct 1168 TACTTTGATTCCGTCAGTGATATTCT-AACAAAGGTTGTGTCAGAGCCTGAACTTCTTGA 1226
Query 1285 G 1285
|
Sbjct 1227 G 1227
> AT1G09040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G09050.1);
Has 614 Blast hits to 567 proteins in 104 species: Archae
- 2; Bacteria - 12; Metazoa - 344; Fungi - 31; Plants -
81; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
| chr1:2911317-2915369 FORWARD LENGTH=3095
Length=3095
Score = 472 bits (255), Expect = 1e-131
Identities = 904/1204 (75%), Gaps = 98/1204 (8%)
Strand=Plus/Plus
Query 143 GAAGATTCTTGTGATGAAGAATTTGTCTGCGGAGATCCGA-AAGTTGATG-TTCGTGTTG 200
|||||||| | |||||| || ||| |||||||||||| | ||||||| | ||||||||
Sbjct 225 GAAGATTCCTATGATGATGAGTTTCCCTGCGGAGATCC-ACAAGTTGA-GCCTCGTGTTG 282
Query 201 GAGATGAATATCAGGTTGAGATACCTCCTATGATCTCTG-AATCCCAA-CGTGCAGCGCT 258
||||||||| |||||| || || ||||||||||| |||| || |||| ||||| | | |
Sbjct 283 GAGATGAATTTCAGGTCGACATTCCTCCTATGATGTCTGCAA--CCAAGCGTGCTGTGTT 340
Query 259 TCTTTTGAATCCT-CTGGACT--CTGATTCCTCTTGTTCCTTTGCT-GTGGGACTACCTG 314
||||| || |||| || | |||||| || | || |||| || | ||||||||||
Sbjct 341 TCTTTCGACTCCTGTTGCTTTGGATGATTCGTCATATT-CTTTTCTCATCGGACTACCTG 399
Query 315 TCGAAGTAATGTGGATAGACACCAAATGTAGAGATAGAG-ATGGACTTGGAAG-TGATAA 372
|| |||| |||||||||| | |||| |||| | || | | ||| ||| || ||| ||
Sbjct 400 TCCAAGTCATGTGGATAG--A-CAAACATAGA-AGAGGGCAAGGAAATGG-AGATGACAA 454
Query 373 CATCGACATGAACGAAT-CTCTCAAATCACTTAA-A---ACAAAAA---GAAGC-C-G-C 421
| ||||||||| | | || | || || |||| | | ||||| | || | | |
Sbjct 455 TGTTGACATGAACCAGTCCT-TGAAGTC-TTTAAGAGCCAAAAAAAGCCGTTGCTCTGCC 512
Query 422 -AGA--GGTGG---GAGTGACGGGAACCCGG-GAGC--TAAGCAACATAT-GAATCTTGA 471
||| | || ||||||| ||| ||| | | |||||| | || |||||||||
Sbjct 513 AAGATCAGAGGAAAGAGTGACAAGAATTCGGAAACCAAGAAGCAA-AGATCGAATCTTGA 571
Query 472 AGTTGTGCCTGAGAAATCATCCAGTTCTTGGGAAGATTTGGAAGTAGATGGATTTGTTCT 531
| ||| |||| || | | ||||||||||||||||||||||| || | | | ||||||||
Sbjct 572 GGCTGTTCCTGTGATACCGTCCAGTTCTTGGGAAGATTTGGAGGTGGCTAGCTTTGTTCT 631
Query 532 TGGGCTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAGA 591
||| |||||||||||||||||||||||| |||||||| |||| || | |||| |||||
Sbjct 632 TGGTCTGTATACATTTGGGAAGAACTTTACTCAGGTGAAGAATTTCATGGAGAACAAAGG 691
Query 592 AACAGGAGATATAC-TTTTGTTTTACTACGGAAAGTTTTACGAA-TCTGCTAAA-TACAA 648
|| |||||| || | | ||||||||||| || ||||| ||| || ||||| ||| ||| |
Sbjct 692 AATAGGAGAGAT-CATGTTGTTTTACTATGGGAAGTTCTAC-AATTCTGC-AAAGTACCA 748
Query 649 AATTTGGTCT-AATTCTCTTAAGAAGCGGAGCAGGAGATGCATACAAGGGAAGAA-GCTC 706
| ||||||| || || | |||||||| | | | | ||| || ||||||| ||||
Sbjct 749 CAGTTGGTCTGAA-TCCCGAAAGAAGCGCAACCGCAAATGTGTA-TTTGGAAGAACGCTC 806
Query 707 TATTCAGATTGGAGGCTACAGTTGTTGTTGTCCCGTTTAATTCGCAAC-ATTCCCGATGA 765
||||||| |||||||| ||| ||||| ||||||| || | | | ||||| |||||
Sbjct 807 TATTCAGGTTGGAGGCAACAACAATTGTTAACCCGTTTGATGC-CTTCTATTCCTGATGA 865
Query 766 A-CTGAAAGAACAGA-AGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAGTCT 823
| || | | |||||| | |||||||||||||||||||||||||||||||| | | ||
Sbjct 866 ACCTCAGA-AACAGATA-CTTGTGGATGTCTCAAAGTCATTTGCTGAAGGTACTATCACT 923
Query 824 CTGGAGGAATACATCAAC-GCGGTTAAGGAA-CTAGTGGGTCTCCGG-TATCTTTTAGAG 880
|| ||| ||||| | || || || ||| || || ||||||||| || | ||| ||||
Sbjct 924 CTAGAGAAATACGT-AAGTGCAGTGAAG-AATCTTGTGGGTCTCAGGCT-TCTGGTAGAC 980
Query 881 GCTGTAGCAATTGGTAAAGATAAGGAAGATCTGACAGT-CCTCACAATAGAAC-CCGAA- 937
||||| || ||||||||||| || |||||||| || || ||| ||| | ||| || ||
Sbjct 981 GCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTCCT-ACA-TC-AACACC-AAT 1036
Query 938 -AATG-CAAAACAATGGTTTACAGTTTCTTCTGCGG-TTCCT-G--C--TGGTTTAGGGG 989
|| | | |||| |||||| || |||||||| ||| | | | ||| |||||
Sbjct 1037 GAA-GACCAAACCATGGTTCACTGTTTCTTCAAAATCTTCTTTGGTCCCTGGAGAAGGGG 1095
Query 990 AATACAGTTCACTCACAGTTGAA-GGTATAATCGAAAA-A-TTGACTGGTTGTTCCCGTC 1046
| |||| ||| |||||| | | || ||||| ||| | || ||||| ||||| ||||
Sbjct 1096 ATTACAATTCCCTCACA-TCGGCTGGCATAAT--AAATCAGTTAACTGGCTGTTCTCGTC 1152
Query 1047 TGATAAAAGGTCGTTACAATGATATCTTCTGGGACGCTGTATGGCCGCGTTTGCTA-CAT 1105
||| |||| |||| ||||||||| ||||||| |||||||||||||||||||||| |
Sbjct 1153 TGAGCAAAGCCCGTTGCAATGATATATTCTGGGGCGCTGTATGGCCGCGTTTGCTAGCC- 1211
Query 1106 AGGGGGTGGCGTTCTGAGCAGCCAAAGGACCGAAGTTACATCAAGTCTAAAGACCACATT 1165
|| || |||| ||| |||||||| ||||||| | || |||| ||||| || |||||
Sbjct 1212 AGAGGATGGCATTCACAGCAGCCAGAGGACCGTGGCTATTTCAAATCTAAGGATTACATT 1271
Query 1166 GTCTTCCTCGTCCCTGGGGT-AAAGAAGTTTTCAAGAC-GGAAACTTGTGAAAC-ATGAT 1222
|| ||| | |||||||| || ||| ||||||||||||| ||| ||||| ||| | |||
Sbjct 1272 GTTTTCATTGTCCCTGGCGTGAAA-AAGTTTTCAAGACAGGAG-CTTGTCAAAGGA-GAT 1328
Query 1223 CATTACTTTGATTCTATCAGTGACATTCTCAA-AAAGGTTGTTTCTGAGCCTGAGCTTCT 1281
|| ||||||||||| ||||||| ||||| || ||||||||| || |||||||| |||||
Sbjct 1329 CACTACTTTGATTCCGTCAGTGATATTCT-AACAAAGGTTGTGTCAGAGCCTGAACTTCT 1387
Query 1282 TGAG 1285
||||
Sbjct 1388 TGAG 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145885470244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5