BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474782
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56210.1 | Symbols: | Heavy metal transport/detoxification ... 1618 0.0
> AT1G56210.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:21035618-21037211 FORWARD LENGTH=1384
Length=1384
Score = 1618 bits (876), Expect = 0.0
Identities = 1233/1395 (88%), Gaps = 65/1395 (5%)
Strand=Plus/Plus
Query 1 AATCTTTTGCCTTCCCCAACATACACTCCTGtctctctttatctctctctctctctctct 60
|||||||||| |||||||||| ||||||||||||||| || ||| ||||||||| || |
Sbjct 1 AATCTTTTGCATTCCCCAACACACACTCCTGTCTCTC-TT-TCTATCTCTCTCT-TC-CA 56
Query 61 ctctctTTCCCTTCAAAGATCTCACAACTTCTTTTGTGTTCTG---T------A-ATG-- 108
|| || ||||||||||||||||||||| |||| ||| || | | |||
Sbjct 57 CT-TC--AAACTTCAAAGATCTCACAACTTC-TTTGAGTTTTGTAATGGCAACAGATGAA 112
Query 109 ATGAAACCAGAAACTaaaaaaacagaacaaaagcaaaaacaatcttcacaaatcaaaGAA 168
|||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 113 ATGAAATCAGAAACTAAAAAAACAGAACATAAGCAAAAACAATCTACACAAATCAAACAA 172
Query 169 GACCTTCCTCCTCCGACCATACCACCTCTTCCACTTCCTTACAAGTCATGCAGCTTGAAA 228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 173 GACCTTCCTCCTCCGACCATACCACCTCTTCCACTTCCTTACAAGTCATGCACCTTGAAA 232
Query 229 GTTTCTATTCACTGTGAAGGCTGCAAAAAG-AAAGTGaaaaaaaTACTTACCAGTATTGA 287
|||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 233 GTTTCTATTCACTGCGAAGGCTGC-AAAAGAAAAGTCAAAAAAATACTTACCAGCATTGA 291
Query 288 AGGTGTTTATAAAGTGGACATTGATGTGAAGCAACATAAAGTAACGGTAATAGGAATCGT 347
|||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 292 AGGTGTTTTTAAAGTGGACATTGATGTGAAACAGCATAAAGTAACGGTGATAGGAATCAT 351
Query 348 TTCACCGGAGATTCTTTTAAAGAAGCTTCACAAGGCAGGTAAAAACGCCGAATTGTTACC 407
|| ||||||||||| |||||||||||| |||| || ||||||||||| ||| | ||
Sbjct 352 CTCGCCGGAGATTCTGTTAAAGAAGCTTAACAAAGCTGGTAAAAACGCTGAACAACTGCC 411
Query 408 GGAGATACCCGACCCGGTTGAGAACAAACCCAAAACCGTCGACCCgaaagagaagaacaa 467
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 412 GGAGATACCCGACCCGGTTGACAACAAACCCAAACCCGTCGACCCGAAAGAGAAGAACAA 471
Query 468 gaaaaagaagaaagaaga-aaaTGTGCAACGAACCGAA-GAAGCTACTTCTTCCGGTACG 525
||| |||||||||||||| ||| |||||| |||| || |||||||||||||||||||
Sbjct 472 GAAGAAGAAGAAAGAAGAGAAA-GTGCAAATAACC-AATGAAGCTACTTCTTCCGGTATA 529
Query 526 GATAAACCGGAAAAAACCGAAG-TC-GGCA-AGAGTGATAAACCGGAATCTGAAAAAACC 582
||||| ||||||||| ||| | || || | || ||||||||||||||||||||||| ||
Sbjct 530 GATAATCCGGAAAAACCCG--GTTCTGG-AGAGTGTGATAAACCGGAATCTGAAAAACCC 586
Query 583 GACGCCGGAGAGTGT-TGTACCGGTGACGGCTGTG-AAGTT--GCTCCGGTGAAAGA-G- 636
| || || | ||||| | | ||||||||||| ||| || || | ||| |||||||| |
Sbjct 587 GTCGACGAAAAGTGTCT-TTCCGGTGACGGCGGTGAAACTTCCGGTCCTGTGAAAGAGGA 645
Query 637 -AAAAAGGATGTTCTTAAGGAGAAACATTCTGTCAAGGAAGAATCTCCGTCACTACCGGA 695
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 646 AAAAAAGGACGTTCTTAAGGAGAAAGATTCTGGGAAGGAAGAATCTCCGTCACCACCGGC 705
Query 696 GGATTCTCCGGCTCCGGCGGCGGAGAAGAAAGCTGAAGAAACCGGTGGAG--G----TGG 749
||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 706 GGATTCTTCGGCTCCGGCGGCGGAGAAGAAAGCTGAAGACACCGGTGGAGCTGTCCCTGA 765
Query 750 TAATGGCAAAGCTGGTaaaaaaaagaaaaagaaagggcaaaaTTTGACCACTTGTAACAA 809
||||||||||| ||||||||| ||||||||||||||||||| |||| | ||| ||||||
Sbjct 766 TAATGGCAAAGTTGGTAAAAAGAAGAAAAAGAAAGGGCAAAGTTTGGCTACTACTAACAA 825
Query 810 TCCTACCGATGGACCTGCCCGTACTCAATCACTTCCTCCGCCCACTACAACAGATCACGA 869
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 826 TCCTACCGATGGACCTGCCCGTACTCAATCACTTCCTCCGCCCACTGCAACAGATTATGA 885
Query 870 CCGTCCATTTAATCAGATCAATGACCACCATATAATAACCAATAACAATCCACCACGTCA 929
||||||| ||||||||||||| ||||||||||||| ||||| ||| ||||| ||||||||
Sbjct 886 CCGTCCAATTAATCAGATCAACGACCACCATATAACAACCACTAATAATCCGCCACGTCA 945
Query 930 CGATATGTATCCTTATCCTGCACCAGGCTATTATGCGCCGCAAGTCATGTACGGCGTAAG 989
|||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 946 CGATCTGTATCCTTATCCTGCACAAGGCTATTATGCGCCGCAAGTCATGTATGGCGTAAG 1005
Query 990 TTATAACGTTGCTCAACCTCCGGTGAGTGTAGACGCTGCGTCGTATTATAGACCTCCACC 1049
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 TTATAACGTTGCTCAACCTCCGGTGAGTGTAGACGCTGCGTCGTATTATACACCTCCACC 1065
Query 1050 ACCGTATTCGTACGCGTACATGCACAATGGTTATCAACCGTCCGATCAAAACTCTTATCA 1109
|||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1066 ACCGTATTCGTATGCGTACATGCACAACGGTTATCAACCGTCCGATCAAAACCCTTGTCA 1125
Query 1110 ACCTCGACCGTCGGATTCATTTGAGTTATTCAGCGATGAGAATCCAAACGGTTGTTCGGT 1169
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 1126 ACCTCGGCCGTCAGATTCGTTTGAGTTATTCAGCGATGAGAATCCAAACGGTTGTGCGAT 1185
Query 1170 AATTTGATGTCAAATTACCAAAAGGACCTTGAACTCTGCTTATACGCCTTGTATGACTTA 1229
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AATGTGATGTCAAATTACCAAAAGGACCTTGAACTCTGCTTATACGCCTTGTATGACTTA 1245
Query 1230 AGGATGGTTTCGTAATTTGAAGTTCTA-CACGTGCAAGTTAGCTTAATGGTCTTTTTAGT 1288
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1246 AGGATGGTTTCGTAATTTGAAGTTCTTTCACGTGCAAGTTAGCTTAATGGTGTTTCTAGT 1305
Query 1289 TAGGTTTAT------GAATGTTGTATTA-T-----------GATTATGATTATGTTAAGA 1330
|| |||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1306 TAAGTTTATTTTAATGAATGTTGTATTAGTTTTATAACTATGATTATGATTATGTTAAGA 1365
Query 1331 TAAAGATTAAGCTTT 1345
|||||||||||||||
Sbjct 1366 TAAAGATTAAGCTTT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5