BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474787
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56230.1 | Symbols: | Protein of unknown function (DUF1399)... 3592 0.0
> AT1G56230.1 | Symbols: | Protein of unknown function (DUF1399)
| chr1:21046009-21049045 REVERSE LENGTH=2447
Length=2447
Score = 3592 bits (1945), Expect = 0.0
Identities = 2256/2407 (94%), Gaps = 17/2407 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTGTCTTTAGATACTCTCCTACTCTCTCTCCGAGAACTTAATGTCTCTT-GAACG 59
|||||||||||||||||||| || |||||||||| ||||||||| |||||| || |||||
Sbjct 43 ATGTCTTGTCTTTAGATACTATCTTACTCTCTCTTCGAGAACTT-ATGTCT-TTAGAACG 100
Query 60 GTCGGAGTTCGCCGACGGTGTTGCGGCACGAAGTCTAAGCGAGATTTCAGAAGTTGACGC 119
||||||||||| |||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 101 GTCGGAGTTCGTCGACGGTGTTGCGGCACGGAGTCTCAGTGAGATCTCAGAAGTTGACGC 160
Query 120 CGTGAGAATCGGAACTGATATTGTATCTTCAGCGAGACGTCTCATCGCACTATTAAGGTC 179
||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 161 CGTGAGAATTGGAGGTGATATTATATCTTCAGCGAGACGTCTCATCGCACTTTTAAGGTC 220
Query 180 CGTCGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CGTAGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 280
Query 240 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTGAAGCCACCAATGAT 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 281 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTAAAGCCACCGATGAT 340
Query 300 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCATTGTTTGAATCCAGTGAGTTA 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 341 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCACTGTTTGAATCCAGTGAGTTA 400
Query 360 TA-TGGATTACTGTGAAAAGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGATG 418
|| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 TAGTG-ATTACTGTGAAAGGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGACG 459
Query 419 AAGAGAACGAGGATTACGCGGTTTTACAATGCGAGAAA-ATCTGGAGTTTACGATATCCG 477
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 460 AAGAGAACGAGGATTACGCGGTTTTACAATGCGA-AAAGATCTGGAGTTTACGATATCCT 518
Query 478 TTGGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTCAGTTAAT 537
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 519 TTAGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTTAGTTAAT 578
Query 538 GAAGATATTAAAAGTCTAGTGGAGAAGCAGAAGTGTCTTTGGGAGAAGTTTTCAGCGCCT 597
||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||
Sbjct 579 GAAGATATTAAAAGTCTAGTGAAGAAGCAGATGTTTCTTTGGGAGAAGTTTTCAGCTCCT 638
Query 598 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 698
Query 658 ATTCTACATAAGTTTAAAGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 717
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 ATACTACACAAGTTTAAGGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 758
Query 718 ATGTGGCTTACGCATCAAAGTTACCCGACGGTATATAAAGATGATGTTGATGAAGTGTTG 777
||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||
Sbjct 759 ATGTGGCTTACGCATCAGAGCTACCCGACAGTATATAAAGATGATGTTGATGAAATGTTG 818
Query 778 GAGGAGATGACGAGAAAAGTAGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 837
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 819 GAGGAGATGACGAGAAAGGTGGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 878
Query 838 ACAACGAAAGAACTGTGGGATAGATACTTCAATCAACCGTATGAGAAAGCAGGCGGCGAA 897
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 879 ACAACAAAAGAACTGTGGGATAGATACTTCAATCAACCATATGAGAAAGCAGGCGGTGAG 938
Query 898 TTGACGATAATATCGAATGAGTCTGGTTTAAGTAACAACACTGTGTTTTATTGGCCTGTC 957
||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 939 TTGTCGATAATAGCGAATGAGTCTGGTTTAAGTAACAACACAATGTTTTATTGGCCTGTC 998
Query 958 TCTGATATGGATGTTAACACCGCGTATAAGTCCATTCGACCTAGATTTGTTTTGGAATTG 1017
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 999 TCTGATATGGATGTTAACACTGCGTATAAGTCCATTCGACCTAGATTTGTCTTGGAATTA 1058
Query 1018 TGTGTATTTCTAAGGCTGAATCCAAAGGCAGAG-AGGAATGAGTCGATGGATCGGAGTTT 1076
||| ||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1059 TGTATATTTTTAAGGTTGAATCCAAAGGCAGAGCAG-AATGAGTCGATAGATCGGAGTTT 1117
Query 1077 TCTTCGTTTGAGAGTTGCTAGATGTCATAGAAAGCTGCAACTGGATAAGAAAATGACTGA 1136
||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1118 TCTACGGTTGAGAGTTGCTAGATGTCATAGGAAGCTGCAGCTGGATAAGAAAATGACTGA 1177
Query 1137 TTTATCTTGCGATGCGTCGTGGCAGAAAGCGTGGCATCTTTACTGTGAGTTTGGTACGTT 1196
||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1178 TTTGTCTAGCGAAGCGTCGTGGCAAAAAGCGTGGCATCTTTACTGTGAGTTTGGAACACT 1237
Query 1197 AGGGTTTGTTTTGGAATCACATTGTGACCGTCCTCGTGGGATTTGCTTCAAAAGCGGAAA 1256
||||||| ||||||||||||||||||||||| ||||||| ||||| || |||||||||||
Sbjct 1238 AGGGTTTATTTTGGAATCACATTGTGACCGTTCTCGTGGAATTTGTTTTAAAAGCGGAAA 1297
Query 1257 ACCAGAAGGGATGATTGAGTTTCCTTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1316
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1298 ACCAGAAGGGATGATAGAGTTTCCGTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1357
Query 1317 TGGTAGGTTTCTCGGTAAGCAAGTGAGTGTGTTTGCTTCGGTTACACCCCCAGTTCAAGC 1376
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1358 TGGTAGGTTTCTTGGTAAGCAAGTGAGTGTGTTTGCTTCAGTTACACCTCCAGTTCAAGC 1417
Query 1377 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACAGATGATTCAGGTGCTATGATATC 1436
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1418 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACCGATGATTCAGGTGCTATGATATC 1477
Query 1437 TGATTCAGTTCAAAGAACAAATAACTTCCGACCTCAAGAAGGAAGATGGCTTACCCGGAC 1496
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1478 TGATTCAGTTCAAAGAACAAACAACTTCCGACCTCAAGAAGGAAGATGGCTTACTCGGAC 1537
Query 1497 TGTGCTTGATCACGCAGGACGGGAATGCTTTGTTATCCGCATTCGCGTTGGGAAGGGAGT 1556
|||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1538 CGTGCTTGATCACGCTGGACGGGAATGCTTCGTTATCCGTATTCGAGTTGGGAAGGGAGT 1597
Query 1557 GTTTAAACGCGGAAGTGAAGTTCCATCCCCGGTGAAGTCAGAGGAGCGGATAACAGAGAT 1616
||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1598 GTTTAAACGTGGAGGTGAAGTTCCATCCCCGGTGAAATCAGAGGAGCGGATCACAGAGGT 1657
Query 1617 TCGAGTAGGTGCTTGGTCTTATCTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1676
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1658 TCGAGTAGGTTCTTGGTCTTATGTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1717
Query 1677 TGGAACCGTGACGCCTAAGGAACCAGTGGAGGATTGGGAGGCTGCTTGGGAATTTTCAAC 1736
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 1718 TGGAACCGTGACGCCTAAGGAACCAATGGAGGATTGGGAGGCAGCATGGGAATTTTCTAC 1777
Query 1737 TGGAGACGAATTGTGCATCCGTTGGGACGCATCAGGAACCATCTCAGAACTTGGTTTATA 1796
||| || ||||||||||||||||||||| ||| |||||| |||||||||||| |||||||
Sbjct 1778 TGGTGATGAATTGTGCATCCGTTGGGACTCATTAGGAACTATCTCAGAACTTCGTTTATA 1837
Query 1797 TTCAAGAAACCCGGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAGTATAAAGG 1856
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1838 TTCAAGAAACCCCGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAATATAAAGG 1897
Query 1857 AGAAGATGAAGAAGACGACGAGGGTTTTATAACAGTGGTTAGATCAACAGAAGAAGATCC 1916
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1898 AGAAGATGAAGAAGACGACGAGGGTTTTGTAACAGTTGTTAGATCAACAGAAGAAGATCC 1957
Query 1917 AACAGAAAAAGCAACTGCTCTCATCGACTGGAAGCATCAAGCGGTTGAATTTCTGCCTGA 1976
||| ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 1958 AACTGAAAAAGCAACTGCTCTGATCGACTGGAAGCATCAAGCCGTGGAATTTCTTCCTGA 2017
Query 1977 GGAAGACGCGGTTTTCGTCTTGCTATTGTCGATATCAATTCTAAGAAGTGTAACACAGAA 2036
|||||||||||||||||||||| |||||||| |||| |||||||| ||||| ||||| ||
Sbjct 2018 GGAAGACGCGGTTTTCGTCTTGTTATTGTCGGTATCGATTCTAAGGAGTGTTACACATAA 2077
Query 2037 AAGAAGAGAAGATGTTGGTAAATTGTTGGTACGAAAGAGGATAACCGAAGCTACAGGTGA 2096
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 2078 AAGAAGAGAAGATGTTGGTAAATTGTTGGTGCGGAAGAGGATAACAGAAGCTACCGGTGA 2137
Query 2097 ACGGGATTGGGGATCAGTAATCGTCGATGCTTCATCAACAAATGTATCTTCTTCTTCAAG 2156
||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||
Sbjct 2138 ACGGGATTGGGGATCGGTTATTGTCGATGCTTCGTCAACAAATGTATCTTCTTCTTCCAG 2197
Query 2157 TCCATACGTAGAACCGTGGTATCGAAACTCCAGTAAGGTTATGGCGATGGAGGAGAAATC 2216
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2198 TCCATACGTAGAACCGTGGTATCGAAACTCCGGTAAGGTTATGGCAATGGAGGAGAAA-- 2255
Query 2217 AGCACAAGTTGCTA-GATATCCATATCCTGTTATGAGCTATTCAAACATTGATGGTGGCG 2275
||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 2256 -GCACAAGTTGC-ACGATATCCATATCCTGTTATGAGCTATTCTAACGTTGATGGTGGTG 2313
Query 2276 ATAATTTGTACAAACACGTAATATTCGGGTGAAACTTCAAAAAGACAGCATTATCT-TTA 2334
|||||||||||||||| |||||||||||||||||||||||||||| |||| || | |||
Sbjct 2314 ATAATTTGTACAAACATGTAATATTCGGGTGAAACTTCAAAAAGATTGCATAAT-TATTA 2372
Query 2335 GTCAGATGGATTGGTGTAACCTAAATTAATAGGATGCTTGGGATGTCTCAATCTCTAGAA 2394
||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||| ||
Sbjct 2373 GTCAGATGGAT-GGTGTAACCAAAAGTAATACGATGCTTGGGATGTCTTAATCTCTATAA 2431
Query 2395 ATTTATG 2401
|||||||
Sbjct 2432 ATTTATG 2438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119226294375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5