BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474790
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56260.1 | Symbols: | unknown protein; Has 32 Blast hits to... 891 0.0
> AT1G56260.1 | Symbols: | unknown protein; Has 32 Blast hits
to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:21064279-21065853 REVERSE
LENGTH=939
Length=939
Score = 891 bits (482), Expect = 0.0
Identities = 678/768 (88%), Gaps = 31/768 (4%)
Strand=Plus/Plus
Query 12 AACACAAAGCCTCTG--TTTATTGAGCCTCGTCGGAGATTTTAGTGAAGCACGAAACAAA 69
|||||||||| |||| |||||| ||||||||||||||||| || ||||||||| | ||
Sbjct 58 AACACAAAGCTTCTGTTTTTATTCAGCCTCGTCGGAGATTTAAGCGAAGCACGATTC-AA 116
Query 70 ACCCTTTTCGCATC-----TATG-AT-AG---G-AATC-A--G-ATT--TTTGTTGAAAC 112
|||||||||| ||| || | || || | |||| | | || ||||||| |||
Sbjct 117 ACCCTTTTCGTATCTGTGTTAGGAATCAGATTGAAATCGAGGGTTTTGCTTTGTTGGAAC 176
Query 113 TATAAAAATC-GATGGC-GAATACTCGAATCGAACCCGGTGTTCCCATTACTCTACAAGA 170
|| ||||| | |||||| ||| | | ||| ||||| |||||||||||||||||||||||
Sbjct 177 TACAAAAA-CTGATGGCTAAAT-CACAAATTGAACCTGGTGTTCCCATTACTCTACAAGA 234
Query 171 GCTTTATCCTTCTTCTCAGTTTTACAAGGAAGCTGTTTCACTTAGAGTTACAGGAATGTT 230
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||
Sbjct 235 GCTTTATCCTTCTTCTCTGTTTTACAAAGAAGGTGTTTCACTTAGAGTTACAGCTATGTT 294
Query 231 GAGAGGATATTCAGTTGAAACAGCTATAGGTGTTATTGAAGATGGAGGCAAAAGTCTTAA 290
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 295 AAGAGGATATTCAGTTGAAACAGCTATAGGTGTTATTGAAGATGGAGGCAGAAGTCTCAA 354
Query 291 AATCAATACTCAGAACCTACGAGATATTAGTTTCAGGGTTGGCTCCATTTATCAGTTTAT 350
|||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 355 AATCAATACTCAGAACATAAGAGATGTTAGTTTCAGGGTTGGCTCTATTTATCAGTTTAT 414
Query 351 TGGAGAGCTTCACATTG---AGCCCAATAATGAGGCGATCTTGCAGGCTCGAACAGGAAG 407
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGGAGAGCTTCACATTGAACAACCCAATAATGAGGCGATCTTGCAGGCTCGAACAGGAAG 474
Query 408 AAATGTGGATGGAATCGATATGAACCTCTACCGTAAAACAGTTGAACTCCTAAGAAAATT 467
||||||||| || |||||||||||||||||||| |||||| | ||||||||||| | ||
Sbjct 475 AAATGTGGACGGGATCGATATGAACCTCTACCGGAAAACAATCGAACTCCTAAGGCAGTT 534
Query 468 TCTAAAAGAAGAAGGCAACAGCAATATGGTTGAATAAAGCTAATTATCAGTTGCTATCCA 527
|||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 535 TCTAAAAGAAGAAGACAACAGCAATATGGTTGAGTGAGGCTAATTATCAGTTGCTATCCA 594
Query 528 AGTAACATAACCCACCCACATTTTCATATTTTGTTCCTTTATTATCTTGTCTTTCACTTG 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 595 AGTAACATAACCCACCCACATTTTCATATTTTGTTCCTTTATTACCTTGTCTTTCACTTG 654
Query 588 TAGATGAATCTTAGAATTGGTGGATTTGTTTTGGTCTGCTTTTTCATATGAGTAATTTTC 647
|||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 655 TAGATGAATCTTAGGAT-GGTGGATATGTTTTGGTCTGCTTTTTCATATGAGCAATTTTC 713
Query 648 TGAAACGAATGTGTTTGAATTTGGCTAACCGGGAGGGAAT-CTGGTTTGGTAAGTTGGTT 706
|||||||||| |||||||| |||||||||| | ||| | | | |||||||||| | ||||
Sbjct 714 TGAAACGAATTTGTTTGAAATTGGCTAACCTGAAGG-AGTTC-GGTTTGGTAAATCGGTT 771
Query 707 AAACCGGTCGGTTTTCGATGGTGAATTAGCTCAAGTAATTCCGTTTTT 754
|||||||| || |||| | ||| ||| |||||||||| ||||||||||
Sbjct 772 AAACCGGTTGGCTTTCCACGGTAAATAAGCTCAAGTAGTTCCGTTTTT 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5