BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474793
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56300.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1048 0.0
> AT1G56300.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:21078820-21080423 REVERSE LENGTH=928
Length=928
Score = 1048 bits (567), Expect = 0.0
Identities = 756/839 (90%), Gaps = 46/839 (5%)
Strand=Plus/Plus
Query 1 aaaaaaaaTATCAAACCCTCTCTCGAAGTTTCCTTCTCCTCTCTCTCCTACAAAGATATT 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 19 AAAAAAAATATCAAACCCTCTCTCGAAGTTTCCTTC-CATCTCTCTCCTACAAAGATATT 77
Query 61 TTTGTTTCATTCTCTTCTCCATCCAC---AA--A-----------AGCTCTCTGAATATT 104
|||||||||||||||||||||||||| || | | |||||||||||||
Sbjct 78 TTTGTTTCATTCTCTTCTCCATCCACAAAAACCATTCCCTCTCTCAACTCTCTGAATATT 137
Query 105 TTTCTCCTTCCAATTTACAAATTTCCGATGCTGTGACTGTCAAATTTAACGTCTGAGAAC 164
||||| ||| | |||||||||||||||||||||||| | | |||||||||||||||
Sbjct 138 TTTCTTCTTACGATTTACAAATTTCCGATGCTGTGA----C--A-TTAACGTCTGAGAAC 190
Query 165 AGAGAAACACATCACAATCTTTGAAATCACAGTGCGACGGAGACGGAGGAGCGAT---TT 221
|||||||||| ||| |||||||||| || |||||||||||||||||||||| || ||
Sbjct 191 AGAGAAACACTTCA-AATCTTTGAATTCGTAGTGCGACGGAGACGGAGGAGCCATCAGTT 249
Query 222 TCGAAAATGGCGTGTGAAGGTGGAGGATCTAACGTCAGATCTAGCTACTACAACGTTCTC 281
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 250 TCGAAAATGGCGTGCGAAGGTGGAGGATCTAACGTCAGATCTAGCTACTACACCATTCTC 309
Query 282 GGAATTCGTAAAGACGCCTCCGTTTCCGATATCCGTACTGCTTATCGTAAGCTAGCTATG 341
|| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 310 GGGATTCGTAAAGATGCCTCTGTTTCCGATATCCGCACTGCTTATCGTAAGCTAGCTATG 369
Query 342 AAATGGCATCCGGATAGATATGCTCGGAATCCTGGAGTTGCCGGCGAAGCTAAACGTCGG 401
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 370 AAATGGCATCCGGATAGATATGCTCGAAATCCTGGAGTCGCCGGAGAAGCTAAACGTCGG 429
Query 402 TTTCAACAAATCCAGGAAGCCTATTCTGTTTTGAATGATGAGAATAAGAGGTCAATGTAC 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTTCAACAAATCCAGGAAGCCTATTCTGTTTTGAATGATGAGAATAAGAGGTCAATGTAC 489
Query 462 GATGTTGGGCTTTATGATCCTCATGAAGATGATGACGATGACTTCTGCGATTTCATGCAA 521
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 GATGTTGGACTATATGATCCTCATGAAGATGATGACGATGACTTCTGTGATTTCATGCAA 549
Query 522 GAGATGATCTCAATGATGAACAATGTCAAAGACGAGGGAGAGAGCTTGGAAGACTTGCAA 581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 550 GAGATGATCTCAATGATGAACAATGTCAAAGACGCGGGAGAGAGCTTGGAAGACTTGCAA 609
Query 582 CGAATGTTCACGGACATGGTTGGTGGAGATGGCGTGAACTTTGACTGTAACAACAATCCA 641
|||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 610 CGAATGTTCACGGATATGGTTGGTGGAGATGGCGTGAGCTATGACTGTAACAATAATCCA 669
Query 642 AAGGGCAGCAAAAGACAACGTGTCAATGTCTCTAGG-GCTAGTGCTGCGATGCGTTAACG 700
||||||| |||||||| |||||||||| |||| ||| | ||||||||||||||||||| |
Sbjct 670 AAGGGCAACAAAAGACCACGTGTCAATATCTCGAGGAG-TAGTGCTGCGATGCGTTAAGG 728
Query 701 CTTACTTCTTTGTGTGTATG--TAACGTGTTGTATCAAAATTTTCAATTCCATTTTCAAT 758
||||||||||| |||||||| | |||||||||||||||||| ||||||||| ||||||
Sbjct 729 CTTACTTCTTT-TGTGTATGAGTGTCGTGTTGTATCAAAATTT-CAATTCCATGTTCAAT 786
Query 759 TGTCTAAATAGACCCCAAGTCCTTAAAATAAATTATCTGTGAACACCAACTAGAACTAG 817
|||||| |||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 787 TGTCTA----GACC--A--T----AAAATAAATTATCTGTGAAAACCAACTAGAACTAG 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5