BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474796
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37070.1 | Symbols: | Protein of unknown function, DUF538 |... 774 0.0
> AT5G37070.1 | Symbols: | Protein of unknown function, DUF538
| chr5:14651012-14652286 FORWARD LENGTH=731
Length=731
Score = 774 bits (419), Expect = 0.0
Identities = 499/538 (93%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 23 CTTTTACACAGAAGAGGAGAGATATGGATCAGATACTGAACAAAGTTGGCTCTTACTGGT 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CTTTTACACAGAAGAGGAGAGATATGGATCAGATACTGAACAAAGTTGGCTCTTACTGGT 116
Query 83 TAGGTCAAAAGGCAAACAAAGAGTTCAATTCCGTCGGTGACGATTTCAATTCATTGTCAA 142
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 117 TAGGGCAAAAGGCAAACAAAGAGTTCAATTCCGTCGGTGACGATTTCAATTCATTGTCTA 176
Query 143 GCAGTATTGAAGGAGGTACCAAGTGGTTAGTCAACAAACTCAAAGGAAAAATGCAGAAAC 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 GCAGTATTGAAGGAGGTACCAAGTGGTTAGTCAACAAACTCAAAGGAAAAATGCAGAAGC 236
Query 203 CATTACCTGATTTGCTGAAGGAATTTGGTTTACCAGTTGGGATCTTTCCACAAGATGCCA 262
|||||||||| ||| |||||||||||||| |||||||||||||||| ||||| ||||| |
Sbjct 237 CATTACCTGAATTGTTGAAGGAATTTGGTCTACCAGTTGGGATCTTCCCACAGGATGCTA 296
Query 263 CAAACTATGAGTTCAACGAAGATACGGGTAAGTTGACTGTATTTATCCCTGAGACCTGCG 322
|||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || |
Sbjct 297 CAAACTATGAATTCAACGAAGAGACGGGTAAATTGACTGTATTCATCCCTGAGACATGTG 356
Query 323 AGGTTGGGTACAGGGATTCATCTGTCCTGCGGTTTTCGACTACGGTAACGGGTTATCTAG 382
| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||| || |
Sbjct 357 AAGTTGGGTACAGAGATTCATCGGTTCTGCGGTTTTCAACTACGGTAACGGGTTA-CTTG 415
Query 383 -AGAAAGGGAAGCTAGCAGAAGTAGAAGGCTTGAAAACAAAGGTGATGATTTGGGTGAAA 441
|||||||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||
Sbjct 416 GAGAAAGGGAAGCTAGCAGAAGTGGAAGGCATGAAGACAAAGGTTATGATATGGGTGAAA 475
Query 442 GTGACATGTATCTCAGCAGACACATCAAAGGTATATTTCACAGCTGGGATAAAGAAAAGC 501
||||| ||||||||||| || |||||||||||||||||||||| ||||| |||||||||
Sbjct 476 GTGACTTGTATCTCAGCTGATTCATCAAAGGTATATTTCACAGCCGGGATTAAGAAAAGC 535
Query 502 AGGAA-CAGAGATGCTTATGAGGTAATAAGGCCTGGTGTTAGTGTTGATAAATTCTAA 558
|| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 536 AG-AAGCAGAGATGCTTATGAGGTAATACGACCTGGTGTTGGTGTTGATAAATTCTAA 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5