BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474797
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56345.1 | Symbols: | Pseudouridine synthase family protein... 1417 0.0
> AT1G56345.1 | Symbols: | Pseudouridine synthase family protein
| chr1:21092993-21094461 REVERSE LENGTH=1392
Length=1392
Score = 1417 bits (767), Expect = 0.0
Identities = 988/1091 (91%), Gaps = 30/1091 (3%)
Strand=Plus/Plus
Query 1 ATACAAATGTCACTGCTTCGAAACCTCTTCTCCTTCTCCATCTCTACAAATTCAATTCTC 60
||||||||||| |||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct 2 ATACAAATGTCCCTGCTTCGAAACTTCTTCTCCTTCACCTTCTCTGCAAATTCAATAATC 61
Query 61 ACAAAACCCTATTTCGCAATCTCAACCAAAGCCATGGAATCTACCTCTGAACTCAATCTC 120
|||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 62 ACAAAACCCTATTTTGCAATCCCAATCAAAGCCATGGAAGCTACCTCTGAACTCAATCTC 121
Query 121 CATTACCCAAAACCCATATCTCCCCCTCCACCTCCAATCTCCAAAGACATTGAACTCAGA 180
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 122 AATTACCCAAAACCCATATCAGCTCCTCCACCTCCAATCTCCAAAGACATTGAACTCAGA 181
Query 181 AGAGCAATGGAAGCTTCATCGAAATCAAGTCTCTTCAATCTCACAAGAGACCATGTATTA 240
|||||||||||||||||||| |||||||||||||||||||| ||||||||| || || ||
Sbjct 182 AGAGCAATGGAAGCTTCATCAAAATCAAGTCTCTTCAATCTTACAAGAGACGATATACTA 241
Query 241 TACGAAGACGAATACCTAATGGCTGTGAATAAACCAAAAGGTGTTTATTGTGAAGCTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TACGAAGACGAATACCTAATGGCTGTGAATAAACCAAAAGGTGTTTATTGTGAAGCTGTT 301
Query 301 CTTCGCTCTGCTCCTCAAATTGTTCTTGATTCTTCGAGTGAGTTTCATTTAGCGAATAGG 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 302 CTTCGCTCTGCTCCTCAAATTGTTCTTGATTCTTCGAGTGAGTATCATTTAGCGAATAGA 361
Query 361 TTAGATCGTGATACTAGTGGTGTGATGATTATTACTAAGTCACATAAAGTCGCTGCTAAG 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 TTAGATCGTGATACTAGTGGTGTAATGATTATTACTAAGTCACATAAAGTCGCTGCTAAG 421
Query 421 CTTGTTAAGGCTTTCACAGAACATAAGATTCGTAAATCATACATTGCTCTTTGTATTGGT 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTTGTTAAGGCATTCACAGAACATAAGATTCGTAAATCATACATTGCTCTTTGTATTGGT 481
Query 481 TCATCTCCAAATTGGAGGAAGATTACGGTTAGTTCAGGTCATGGACGGTCGAAACACGGT 540
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 482 TCATCTCCAAATTGGAGGAGGGTCACGGTTAGTTCAGGTCATGGACGGTCGAAACACGGA 541
Query 541 GCTTGGCGTGTTTACGCTGCGTTGGATGTTGGTAGAGTTTTACCTGGTGGATCTTTTGTT 600
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 542 GCTTGGCGGGTTTACGCTGCGTTAGACGTTGGTAGAGTTTTACCTGGTGGATCTTTTGTT 601
Query 601 AGAGATATGGAGACGACGTTCGAAGTTGTATCGGTAAACGGTGTGGAAACCGAATCTTGT 660
|||||||||||||| ||||| ||||||||||| |||||| ||||| ||| ||||||||||
Sbjct 602 AGAGATATGGAGACAACGTTTGAAGTTGTATCTGTAAACAGTGTGAAAAACGAATCTTGT 661
Query 661 GAAGTGGAAAATGTGA-T--TGT--T-GTTGA--AGGGG-AGCAAG-AATTGAGTTGTGG 710
||| ||||| |||||| | ||| | |||| ||||| || | | |||||||||||||
Sbjct 662 GAACTGGAAGATGTGAATCATGTGATTGTTGCTGAGGGGGAG-AGGGAATTGAGTTGTGG 720
Query 711 TGGAGATGATG-T--TGTTGT-G--GT--T-AGGGCGTTTCCGCGAAGTGGGAGGACGCA 761
||||||||||| | |||||| | || | |||||||||||||||||||||||||||||
Sbjct 721 TGGAGATGATGATGATGTTGTTGTTGTGGTTAGGGCGTTTCCGCGAAGTGGGAGGACGCA 780
Query 762 TCAGATTAGGTTACATTGTCAGTATCTTGGGATTTCGATTAGAGGAGATGTTAAGTATCA 821
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 781 TCAGATTAGGTTACATTGTCAGTATCTTGGGATTCCTATTAGAGGAGATGTTAAGTATCA 840
Query 822 TGGAATGTATGAGTGGAGA-GGAAGAACATTTGAGGGGCATGAGCTTCATGCTGAGTGTT 880
|||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 TGGAGTGTATGAGTGGA-ATGGAAGAACATTTGAGGGGCATGAGCTTCACGCTGAGTGTT 899
Query 881 TGTCGTTGGATCATCCGGTTACGGATGATCCTATTGTTATTCGAGCTCCTCTTCCGTGCT 940
| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 900 TATCGTTAGATCATCCGGTTACGGGTGATTCTATTGTTATTCGAGCTCCTCTTCCGTATT 959
Query 941 GGGCCA-CCAGAGAT-GAAAGTTGTAACGGTTGATGGTTAGT-TATCAATGGATAGTGTT 997
|||| | || ||||| |||| | ||||||||| | || ||| | | ||||| ||||||
Sbjct 960 GGGC-AGCCGGAGATTGAAAAT-GTAACGGTTAAGGGATAGAGT-TGAATGGTTAGTGTG 1016
Query 998 AAGATCTTGACATTGGTTGATTTGTGttttttttAAAAAT-TCATTTCTTCAATGTCAAA 1056
||||| ||||| || ||| | | || |||| | ||| ||||||||||| |||||||
Sbjct 1017 AAGATTTTGACCTTTGTTTAACAAT-TTGTTTTCCAGAATCTCATTTCTTCAGTGTCAAA 1075
Query 1057 GATGGAAGATT 1067
|||||||||||
Sbjct 1076 GATGGAAGATT 1086
Score = 76.8 bits (41), Expect = 4e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1068 AACATTAGAAAGAAGGAAGTACATTGAATACAATCCTATGTTTCCTTTTGTTT 1120
|||||| | |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1130 AACATTGGCAAGAAGGAAGTACATTGAATACAATCCTCTGTTTGCTTTTGTTT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5