BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474798
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56350.1 | Symbols: | Peptide chain release factor 2 | chr1... 1914 0.0
AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 318 9e-86
> AT1G56350.1 | Symbols: | Peptide chain release factor 2 | chr1:21094778-21097988
FORWARD LENGTH=1673
Length=1673
Score = 1914 bits (1036), Expect = 0.0
Identities = 1238/1337 (93%), Gaps = 8/1337 (1%)
Strand=Plus/Plus
Query 225 ATTCTGGGAGTAGTTTCGTTTCCACG-ACTCGATCATTGAACTCAGAAGCTGTAGCTGTG 283
|||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 268 ATTCTGGGAGTAGTTTCGCTTCCA-GTACTCGATCATTGAGCTCAGAAGCTGTAGCTGTG 326
Query 284 GCTGCGACTTGTGACGGACTTACAGTAGAACGAATCATAGCTAATCAATGGCCGATTTTA 343
|| ||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 327 GCAGCGACTTGTGATGGACTTACTGTGGAACGAATTATAGCTAATCAGTGGCCGATTTTA 386
Query 344 GATGAGAATGAAAGTGATTGGAAAAGTCACGCTGCAGCAATTTCACAATCGATTCAAGTC 403
|||||||||||| |||||||||| |||||||||||||||||| |||| || |||||||||
Sbjct 387 GATGAGAATGAAGGTGATTGGAAGAGTCACGCTGCAGCAATTGCACAGTCTATTCAAGTC 446
Query 404 ATCAAGAGACGATTACAGTGGAAGAAACTTTTGGTGAGGTTAAAAGTGTTATCTACAGAG 463
||||||||||||||||||||||||||||| ||||||||| | ||||| |||||| |||||
Sbjct 447 ATCAAGAGACGATTACAGTGGAAGAAACTCTTGGTGAGGCTGAAAGTTTTATCTGCAGAG 506
Query 464 CTGAATAAGCCTGAT-TTATGGAATGATCCGATTCATGCTGGTAAGATAAGCCGGGAACA 522
|||| ||| ||||| || ||| ||||||| | |||||||||||||||||||||||| ||
Sbjct 507 TTGAACAAGTCTGATCTT-TGGGATGATCCAACTCATGCTGGTAAGATAAGCCGGGAGCA 565
Query 523 TGGTTCGCTTACGGGGAAAATGAAAGGAGTTATGACATTTGAGAGAGAGCTTCTTGAACA 582
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CGGCTCGCTTACGGGAAAAATGAAAGGAGTTATGACATTTGAGAGAGAGCTTCTTGAACA 625
Query 583 TATTGATATGTTGAAACTTACTAAAGAGGAGAATGATACAGAGTTAGAATCGGAAACATT 642
||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 626 CATTGACATGTTGAAACTCGCTAAAGAGGAGAACGATTCAGAGTTAGAATCGGAAACTTT 685
Query 643 GAAGGCATTGATGGATATGAGGAGAGTTTCAAAAGAGAAAGAACTCGAGGCTTTATTATC 702
||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 686 AAAGGCATTGATAGATATGAGAAGGGTGTCAAAAGAGAAAGAACTCGAGGCTTTATTATC 745
Query 703 TGCGGAGAATGATCCGTGTTCCTGTTATATTGAGGTTCAAGCTGGAGCTGGAGGAACAGA 762
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 746 TGCGGATAATGATCCTTGTTCTTGTTATATCGAGGTTCAAGCTGGAGCTGGAGGAACAGA 805
Query 763 GAGCAATGATTGGGCATCTATGGTAATGGAAATGTATAAAACATGGGCTCAACGACGTAA 822
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 806 GAGCAATGATTGGGCAGCTATGGTAATGGAAATGTACAAAACATGGGCTCAACGACGCAA 865
Query 823 ATTTTCAGTCACTGTCGTTGATGAAGCGGCTGGGGAAATAGCGGGAATCAAGCGTGCAAC 882
||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct 866 ATTTTCAGTCACTGTGGTTGATGAAGCTCCTGGGGAGATAGCAGGAATCAAGCGTGCTAC 925
Query 883 AATCAAAGTGAACGGTGAATACTCATATGGATACGCCAAAGCAGAAGTTGGAGTTCATAG 942
|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 926 AATCAAAGTGAACGGTGAATACGCATACGGATACGCCAAAGCAGAAGTTGGAGTACATAG 985
Query 943 GCTGGTGCGTATATCCCCGTTTGACAGTGGAAAACGGAGGCACACTTCCTTTGCAGCGGT 1002
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 986 GCTGGTGCGTATATCCCCGTTTGACAGTGGAAAACGGAGACACACTTCGTTTGCGGCAGT 1045
Query 1003 TGCGGTGATTCCAATTCTAGGTGATGGTTCAACCCGAGTACAGATCAATGACTCGGATCT 1062
||||||||||||||||||||||||||| || ||||| || ||||||||||||| |||||
Sbjct 1046 TGCGGTGATTCCAATTCTAGGTGATGGGTCCACCCGTGTGGAGATCAATGACTCCGATCT 1105
Query 1063 CCGGATCGAGCGGTTCCGTTCTGGAGGAGCCGGTGGACAGCATGCTAACACGACAGACAG 1122
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1106 CCGGATTGAGCGGTTCCGTTCTGGAGGAGCCGGTGGGCAGCACGCTAACACGACAGACAG 1165
Query 1123 TGCTGTGAGAATCATTCACATACCAACTGGCATAACAGCAACTTGTCAGAATGAAAGGTC 1182
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TGCTGTTAGAATCGTTCACATACCAACTGGCATAACAGCAACTTGTCAGAATGAAAGGTC 1225
Query 1183 GCAACATATG-AACAAGGCTTCAGCAATGGCGGTACTACAATCACGTTTAGACCAATTGG 1241
||||||| | |||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 1226 ACAACATA-GTAACAAGGCTTCAGCAATGGCAGTACTACAATCACGGTTAGACCAACTGG 1284
Query 1242 AAATGGCTCGTCAGACAGCAATGAATGCTCAACATACGCAATCACTAACCGAAATCAGCT 1301
||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 1285 AAATGGCTCGTCAGACAGCAATGAACGCTCAACATACACAATCACTAACAGAGATCAGCT 1344
Query 1302 GGGGAAACCAGATACGAACTTACGTTCTCCATCCATACAGAATGGTGAAGGATCTGCGAA 1361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1345 GGGGAAACCAGATACGAACTTATGTTCTCCATCCATACAGAATGGTGAAGGATCTGCGAA 1404
Query 1362 CAAACTACGAAGTCTCTGATCCCGACTCGGTTCTTGAAGGAGACTTAGATGGTTTCATCT 1421
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1405 CCAACTACGAGGTCTCTGATCCTGACTCGGTTCTTGAAGGAGACTTAGATGGTTTCATCT 1464
Query 1422 TGAGCTTCTTATCTTCTTCTTTAGACAGAGATGATCCAGAACATTAGTTTAGAGATGTTG 1481
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1465 TGAGCTTCTTATCTTCTTCTTTAGACAAAGATGATCCTGAACATTAGTTTATAGATGTTG 1524
Query 1482 ACATGATTGTCTCAAAAGAGTTATTCTTATGTT-ACTTGAAACGTCTTTTTATTTACTTA 1540
||||||||||||||| |||||| | |||||||| |||||||||||||||||||| ||| |
Sbjct 1525 ACATGATTGTCTCAAGAGAGTTCTACTTATGTTTACTTGAAACGTCTTTTTATT-ACTAA 1583
Query 1541 ACTCCGAAAGGATTTAG 1557
|||||||||||| ||||
Sbjct 1584 ACTCCGAAAGGACTTAG 1600
> AT3G30122.1 | Symbols: | pseudogene similar to peptide chain
release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368
Length=2368
Score = 318 bits (172), Expect = 9e-86
Identities = 210/227 (93%), Gaps = 8/227 (4%)
Strand=Plus/Plus
Query 1336 ATACAGAATGGTGAAGGATCTGCGAACAAACTACGAAGTCTCTGATCCCGACTCGGTTCT 1395
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct 2095 ATACAGAATGGTGAAGGATCTGAGAACAAACTACGAGGTCTCTGATCCTGACTCGGTTCT 2154
Query 1396 TGAAGGAGACTTAGATGGTTTCATCT-TGAGCTTCTTATCTTCTTCTTTAGACAGAGATG 1454
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 2155 TGAAGGAGACTTAGATGGTTTCATCTCTAAGCTTCTTATCTTCTTCTTTAGACAAAGATG 2214
Query 1455 ATCCAGAACATTAGTTTAGAGATGTTGACATGATTGTCTCAAAAGAGTTAT-T-CTTATG 1512
|||| || |||||||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct 2215 ATCCTGACCATTAGTTTAGAGATGTTGACATGATTGTCTCAAGAGAGTT-TCTACTTATG 2273
Query 1513 TT-ACTTGAAACGTCTTTTTATTTACTTAACTCCGAAAGGA-TTTAG 1557
|| |||||||||||||||| ||| ||| ||||||||||||| |||||
Sbjct 2274 TTTACTTGAAACGTCTTTT-ATT-ACTAAACTCCGAAAGGACTTTAG 2318
Score = 189 bits (102), Expect = 7e-47
Identities = 132/147 (90%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 1187 CATATGAACAAGGCTTCAGCAATGGCGGTACTACAATCACGTTTAGACCAATTGGAAATG 1246
|||||||||||||||||||||||||||||||| |||||| | ||||||||| | || |||
Sbjct 1861 CATATGAACAAGGCTTCAGCAATGGCGGTACTTCAATCATGGTTAGACCAACTAGAGATG 1920
Query 1247 GCTCGTCAGACAGCAATGAATGCTCAACATACGCAATCACTAACCGAAATCAGCTGGGGA 1306
|| ||||||||| || |||| ||||||||||| | ||||||||| || ||||||||||||
Sbjct 1921 GCACGTCAGACATCAGTGAACGCTCAACATACACGATCACTAACAGAGATCAGCTGGGGA 1980
Query 1307 AACCAGATACGAACTTACGTTCTCCAT 1333
||||||||||||||||| |||||||||
Sbjct 1981 AACCAGATACGAACTTATGTTCTCCAT 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5