BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474804

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56420.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   874    0.0  
  AT4G03376.1 | Symbols:  | Pseudogene of AT1G56420 | chr4:148262...   252    4e-66


> AT1G56420.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G12530.1); 
Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses 
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21122551-21124234 
REVERSE LENGTH=773
Length=773

 Score =  874 bits (473),  Expect = 0.0
 Identities = 536/566 (95%), Gaps = 6/566 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT  60

Query  61   ACCATCGATGCTCTTCGATTAAGAATCATCAATCAGCTTAAAGCCAATGAAGAGTTAAAG  120
            || ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  61   ACTATCGATGCTCTCCGATTAAGGATCATCAATCAGCTCAAAGCCAATGAAGAGTTAAAG  120

Query  121  AGCACAACGATTAAAATGGCAGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGCACAACGATTAAAATGGCGGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA  180

Query  181  CAGACTAAAAGAGAACTCTTTGATGCTCTTCGTCAAGAACTCGAAGGTCCAGTGCTAGAG  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  CAGACTAAAAGAGAACTCTTTGATGCTCTTCGCCAAGAACTCGAAGGTCCAGTGCTAGAG  240

Query  241  AAGGCATCAAAATCAGTTTGGGATTTGATTCTTGAGAAGGATGGATTAGGGAAAGAGATA  300
            |||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||
Sbjct  241  AAGGCATCAAAATCAGTTTGGGATTTGATTATTGAGAAAGATGGGTTAGGAAAAGAGATA  300

Query  301  AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGCGGGCAAGAACCGCCTTTTTATTCT  360
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  301  AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGTGGGCAAGAACCACCTTTTTATTCT  360

Query  361  TCATCAAACGTCGAGAAAACCCCAATGGAGATAGAGAAAGAGACGGAGATGAAGGAGAAT  420
            ||||||||||| |||||||| || ||||||||||| || ||||||||| |||||||   |
Sbjct  361  TCATCAAACGTGGAGAAAACTCCGATGGAGATAGATAAGGAGACGGAGGTGAAGGA---T  417

Query  421  AATAGCTCAAAAACAAAACCAAAGAAAAGAAGTCTTAGTGAGGTGAATTCCTCTGAAGGT  480
            |   ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  418  A---GCTCAAAGACGAAACCAAAGAAAAGAAGTCTTAGTGAGGTAAATTCCTCTGAAGGT  474

Query  481  ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCGCAACTGTAACTTTAGAA  540
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  475  ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCTCAACTGTAACTTTAGAA  534

Query  541  TCTAAGAAAACGCCTTGAGCCTTGTT  566
            |||| ||||||||||||||||| |||
Sbjct  535  TCTAGGAAAACGCCTTGAGCCTGGTT  560


 Score = 95.3 bits (51),  Expect = 7e-19
 Identities = 60/64 (94%), Gaps = 1/64 (2%)
 Strand=Plus/Plus

Query  570  CTGACTCTTCTGATATAGA-TAGTCTTGGTGTTTTATTGTTGACATTGCTCTTTTCAACT  628
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| 
Sbjct  588  CTGAGTCTTCTGATATAGATTAGTCTTGGTGTTTTATTGTTGACATTGCTCTTCTCAACC  647

Query  629  ATCT  632
            ||||
Sbjct  648  ATCT  651


> AT4G03376.1 | Symbols:  | Pseudogene of AT1G56420 | chr4:1482628-1482853 
REVERSE LENGTH=226
Length=226

 Score =  252 bits (136),  Expect = 4e-66
 Identities = 185/207 (89%), Gaps = 9/207 (4%)
 Strand=Plus/Plus

Query  20   TTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGTACCATCGATGCTCTTCGAT  79
            ||||||| |||||||||||||||||||||||||| | |||||| ||||||||||| ||||
Sbjct  8    TTAAACCGGAAGACGTTCTTGAACATCTTATGAATGCTGGTACTATCGATGCTCTCCGAT  67

Query  80   TAAGAATCATCAATCAGCTT-AAAGCCAATGAAGAGTTAAAGAGCACAACGATTAAAATG  138
            ||||||||||||| ||| || |||||| |  || ||||||||||||||||||||||||||
Sbjct  68   TAAGAATCATCAAGCAG-TTCAAAGCCTA--AA-AGTTAAAGAGCACAACGATTAAAATG  123

Query  139  GCAGA--AGAGAGTAAAGTTCTGAACACACC-TG-GTGCTGAGAAACAGACTAAAAGAGA  194
            |||||  ||||||||||||||| |||||||  |  || ||||||||||||||||||||||
Sbjct  124  GCAGAGGAGAGAGTAAAGTTCTTAACACACTATTAGTACTGAGAAACAGACTAAAAGAGA  183

Query  195  ACTCTTTGATGCTCTTCGTCAAGAACT  221
            ||| ||||||||||||||||| |||||
Sbjct  184  ACTTTTTGATGCTCTTCGTCAGGAACT  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31848449198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5