BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474804 Length=659 Score E Sequences producing significant alignments: (Bits) Value AT1G56420.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 874 0.0 AT4G03376.1 | Symbols: | Pseudogene of AT1G56420 | chr4:148262... 252 4e-66 > AT1G56420.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21122551-21124234 REVERSE LENGTH=773 Length=773 Score = 874 bits (473), Expect = 0.0 Identities = 536/566 (95%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGTCTTCTTCAGTAATTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGT 60 Query 61 ACCATCGATGCTCTTCGATTAAGAATCATCAATCAGCTTAAAGCCAATGAAGAGTTAAAG 120 || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 61 ACTATCGATGCTCTCCGATTAAGGATCATCAATCAGCTCAAAGCCAATGAAGAGTTAAAG 120 Query 121 AGCACAACGATTAAAATGGCAGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCACAACGATTAAAATGGCGGAAGAGAGTAAAGTTCTGAACACACCTGGTGCTGAGAAA 180 Query 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGTCAAGAACTCGAAGGTCCAGTGCTAGAG 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CAGACTAAAAGAGAACTCTTTGATGCTCTTCGCCAAGAACTCGAAGGTCCAGTGCTAGAG 240 Query 241 AAGGCATCAAAATCAGTTTGGGATTTGATTCTTGAGAAGGATGGATTAGGGAAAGAGATA 300 |||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 241 AAGGCATCAAAATCAGTTTGGGATTTGATTATTGAGAAAGATGGGTTAGGAAAAGAGATA 300 Query 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGCGGGCAAGAACCGCCTTTTTATTCT 360 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 301 AACGAAACAGTAGAACGTGTCTTTTGTCATCTAAGTGGGCAAGAACCACCTTTTTATTCT 360 Query 361 TCATCAAACGTCGAGAAAACCCCAATGGAGATAGAGAAAGAGACGGAGATGAAGGAGAAT 420 ||||||||||| |||||||| || ||||||||||| || ||||||||| ||||||| | Sbjct 361 TCATCAAACGTGGAGAAAACTCCGATGGAGATAGATAAGGAGACGGAGGTGAAGGA---T 417 Query 421 AATAGCTCAAAAACAAAACCAAAGAAAAGAAGTCTTAGTGAGGTGAATTCCTCTGAAGGT 480 | ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 418 A---GCTCAAAGACGAAACCAAAGAAAAGAAGTCTTAGTGAGGTAAATTCCTCTGAAGGT 474 Query 481 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCGCAACTGTAACTTTAGAA 540 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 475 ATCGATGAAGTTGCAACGACGAAGAAGAAGCAAGGTGATTCCTCAACTGTAACTTTAGAA 534 Query 541 TCTAAGAAAACGCCTTGAGCCTTGTT 566 |||| ||||||||||||||||| ||| Sbjct 535 TCTAGGAAAACGCCTTGAGCCTGGTT 560 Score = 95.3 bits (51), Expect = 7e-19 Identities = 60/64 (94%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 570 CTGACTCTTCTGATATAGA-TAGTCTTGGTGTTTTATTGTTGACATTGCTCTTTTCAACT 628 |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 588 CTGAGTCTTCTGATATAGATTAGTCTTGGTGTTTTATTGTTGACATTGCTCTTCTCAACC 647 Query 629 ATCT 632 |||| Sbjct 648 ATCT 651 > AT4G03376.1 | Symbols: | Pseudogene of AT1G56420 | chr4:1482628-1482853 REVERSE LENGTH=226 Length=226 Score = 252 bits (136), Expect = 4e-66 Identities = 185/207 (89%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 20 TTAAACCAGAAGACGTTCTTGAACATCTTATGAACGATGGTACCATCGATGCTCTTCGAT 79 ||||||| |||||||||||||||||||||||||| | |||||| ||||||||||| |||| Sbjct 8 TTAAACCGGAAGACGTTCTTGAACATCTTATGAATGCTGGTACTATCGATGCTCTCCGAT 67 Query 80 TAAGAATCATCAATCAGCTT-AAAGCCAATGAAGAGTTAAAGAGCACAACGATTAAAATG 138 ||||||||||||| ||| || |||||| | || |||||||||||||||||||||||||| Sbjct 68 TAAGAATCATCAAGCAG-TTCAAAGCCTA--AA-AGTTAAAGAGCACAACGATTAAAATG 123 Query 139 GCAGA--AGAGAGTAAAGTTCTGAACACACC-TG-GTGCTGAGAAACAGACTAAAAGAGA 194 ||||| ||||||||||||||| ||||||| | || |||||||||||||||||||||| Sbjct 124 GCAGAGGAGAGAGTAAAGTTCTTAACACACTATTAGTACTGAGAAACAGACTAAAAGAGA 183 Query 195 ACTCTTTGATGCTCTTCGTCAAGAACT 221 ||| ||||||||||||||||| ||||| Sbjct 184 ACTTTTTGATGCTCTTCGTCAGGAACT 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31848449198 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5