BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474805
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56423.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1315 0.0
> AT1G56423.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21128912-21130839
FORWARD LENGTH=1257
Length=1257
Score = 1315 bits (712), Expect = 0.0
Identities = 849/915 (93%), Gaps = 10/915 (1%)
Strand=Plus/Plus
Query 1 GAACCGACATATCCACATGACTTTGATTGAGTCTTCCAATATTCTTTCTCTCTGACTTGT 60
||||||||||||||||||| |||| | ||||||| ||||||| ||| ||||||||| |
Sbjct 1 GAACCGACATATCCACATGGCTTT--TGGAGTCTTTGAATATTCCTTCCCTCTGACTTAT 58
Query 61 GGTTTCCTGAAACCTTCCTCACACTCAAATGTTTTGTTCTTCTTAGGCACAATTTCAGAA 120
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 59 GGTTTCCAGAAACCTTCCTCACACTCAAATGTTTTGTTCTTCTTAATCACAATTTCAGAA 118
Query 121 TTGGTCTTTTAGGGTTAAGAATTTGGGATTGTGAATTGAAAAGCCATGGACTTCCGAAGA 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 TTGGTCTTTTACGGTTAAGAATTCAGGATTGTGAATTGAAAAGCCATGGACTTCCGAAGT 178
Query 181 AGAAGGGTTCAATTTATTCTCTTTGCTATCGGATTAATCGCTCTTAGTATGACAGCTGAA 240
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 AGAAGGGTTCAATTTCTACTCTTTGCTATTGGATTAATCGCTCTTAGTATGACAGCTGAA 238
Query 241 AAATGTCGGGAACTTGTTGGACAAGAAGCTGCATCAAAGAGTGGACAGTTTACGTTCTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 239 AAATGTCGGGAACTTGTTGGACAAGAAGCTGCATCAAAGAGTGGACAGTTTACATTCTTG 298
Query 301 AATTGTTTTGATATGAGTTCAGGAACTTTAGCCTGTGCAGTTAAAGAAGGTGTGAAGCTT 360
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 299 AATTGCTTTGATATGAGTTCAGGGACTTTAGCATGTGCAGTTAAAGAAGGTGTGAAGCTT 358
Query 361 TATTTCTATAATATAAGGTCTATTCATGTAGAGAAAGCCCGGAATGTTGCTATCGAGAAA 420
|||||||| |||||||| ||||||||||||||||| ||| |||| || ||||| ||||||
Sbjct 359 TATTTCTACAATATAAGATCTATTCATGTAGAGAAGGCCAGGAACGTCGCTATTGAGAAA 418
Query 421 GCCTTGCATGAGGCGTTGG-TAAATGGCATGCCTGCAAAAGAAGCAGCTAAAGAGGTGCA 479
|||||||| ||||| |||| ||| |||||||| ||||||||||||||| ||||||| |||
Sbjct 419 GCCTTGCACGAGGCATTGGATAA-TGGCATGCTTGCAAAAGAAGCAGCCAAAGAGGGGCA 477
Query 480 GAGAGCAGGTGAAAAAGCGGCTAAACTGGCGA-GCAGGCAGGCTAAACGTATCATAGGAC 538
|||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||
Sbjct 478 GAGAGCAGGTGAAAAAGCGGCTAAACTGGCGACGC-GGCAAGCGAAACGTATCATAGGAC 536
Query 539 CAATAGTAGCAGCCGGGTGGGATTTCTTTGAAGCGCTTTACTTTGGAGGGACTTTAACTG 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAATAGTAGCAGCTGGGTGGGATTTCTTTGAAGCGCTTTACTTTGGAGGGACTTTAACTG 596
Query 599 AAGGGTTCTTGCGCGGTTCTGGAACTATGGTTGGTGCTTACTCAGGAGGGTATGTGGGTG 658
||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 597 AAGGGTTCTTGCGTGGTACTGGAACTATGGTTGGTGCTTACTCAGGAGGGTACGTAGGTG 656
Query 659 AGCAGAGATTTGGTAGATTCGGTTATCTTGTGGGAAGTACCTTGGGGAATTGGGTTGGCG 718
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 AGCAGAGATTTGGTAGATTCGGTTATCTTGTGGGAAGTACCTTAGGGAATTGGGTTGGCG 716
Query 719 CACGGGTTGGACTGATGGTTTATGATGTTGTGAATGGGGTAAACTTCTTCCT-TGAGACT 777
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 717 CACGGGTTGGACTTATGGTTTATGATGTTGTGAATGGGGTAAACTTCTTC-TATGAGACT 775
Query 778 TATCAATCTGGAGAAATTTATAAGGATCAGTCTACATATGAAAGTCCTGAGGATCAGTCT 837
||||||||||||||||| ||| |||||||||||||| |||||||||| ||||| | ||||
Sbjct 776 TATCAATCTGGAGAAATATATGAGGATCAGTCTACAAATGAAAGTCCCGAGGACCGGTCT 835
Query 838 ACATTTGAAAGTCCTAAGGATCAGTCTACATATGAAAGTCCTGAGGATCAG-TCTACATA 896
|||| |||||||| | |||| | |||||||||||||||||||||||| ||| ||||| ||
Sbjct 836 ACATATGAAAGTCGTGAGGACCCGTCTACATATGAAAGTCCTGAGGA-CAGGTCTACTTA 894
Query 897 TGAAAGTCCTGAGGA 911
||||| || ||||||
Sbjct 895 TGAAATTCGTGAGGA 909
Score = 346 bits (187), Expect = 3e-94
Identities = 345/415 (83%), Gaps = 35/415 (8%)
Strand=Plus/Plus
Query 800 AGGATCAGTCTACATATGAAAGTCCTGAGGATCA-GTCTACATT-TGAAAGTCCTAAGGA 857
|||| | |||||||||||||||||||||||| || |||||| || ||||| || | ||||
Sbjct 852 AGGACCCGTCTACATATGAAAGTCCTGAGGA-CAGGTCTAC-TTATGAAATTCGTGAGGA 909
Query 858 TCAGTCTACATATGAAAGTCCT---GAGGATCAGTCTACATATGAAAGTCCTGAGGATCG 914
||||||||||||||||||||| |||||||||||||||||||||| | | | || |
Sbjct 910 CCAGTCTACATATGAAAGTCCTGAGGAGGATCAGTCTACATATGAAACTTCAAATTAT-G 968
Query 915 TCCTGAAAATCAG-T-CTACATATGAAACTTCAAGTGACGAGCTCTAGATGAAAATGACC 972
|| | || || | ||||| ||| || | | | | | | | | | ||||||||||
Sbjct 969 AGCTCTAGAT-AGTTCCTACA-ATG-AA--TGGATTTATG-GAT-T-G--GAAAATGACC 1018
Query 973 TAAGAAACCTTTGAAGACAAGTCAGAAAGG-A--ATTGGAAAGCTTTAGAAGATTTCGGA 1029
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 1019 TAAGAAACTTTTGAAGACAAGTCAGAAAGGAATTATTGGAAAGCTTTAGAAGATTTTGGA 1078
Query 1030 ATATTTCTTTCCGATATATTTGACATA--T-TTGTATAGACTAAAAGAGTTTCGACAAGA 1086
|||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1079 ATATTTCTTTCCAATACATTTGACATAGTTGTTGTATAGACTAAAAGAGTTTCGACAAGA 1138
Query 1087 TC-AATTTGTTGATGGATGCCCAAAATATTTAAGTTAAATTTGTTTTATTGTACAAATCG 1145
| |||| |||||||||||||| |||||||| |||| |||||||||||||||||||| |
Sbjct 1139 -CGAATTCGTTGATGGATGCCCCAAATATTTCAGTTGCATTTGTTTTATTGTACAAATTG 1197
Query 1146 GTTGTTTCAAATTAGTTTTTACTTTTTATGTTGGTTTTCTTGAATGTTTAAATGT 1200
||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1198 TTTGTTTCAAATTA-------CTTTTTATGTTGGTTGTCTTGAATGTTTAAATGT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5