BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474806
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56430.1 | Symbols: ATNAS4, NAS4 | nicotianamine synthase 4 ... 1535 0.0
AT1G09240.1 | Symbols: NAS3, ATNAS3 | nicotianamine synthase 3 ... 758 0.0
> AT1G56430.1 | Symbols: ATNAS4, NAS4 | nicotianamine synthase
4 | chr1:21136944-21138087 FORWARD LENGTH=1144
Length=1144
Score = 1535 bits (831), Expect = 0.0
Identities = 944/999 (94%), Gaps = 6/999 (1%)
Strand=Plus/Plus
Query 1 AAACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGTAAACAAGATCTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGTAAACAAGATCTGC 121
Query 61 GATCTATACGAAAAGATCTCGAAGCTCGAGACGCTAAAGCCTTGTGAAGATGTCGACACT 120
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 122 GATCTTTACGAAAAGATCTCGAAGCTTGAGACCCTAAAGCCTTGTGAAGATGTCGACACT 181
Query 121 CTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAG 241
Query 181 ATGTCTGAAAACATCCAAGAGATGAGATCAAACCTCATCAAAATTTGTGGAGAAGCTGAA 240
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 242 ATGTCTGAAAACATCCAAGAGATGAGATCAAACCTCATCAAAATCTGTGGTGAGGCTGAA 301
Query 241 GGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGACAACCCACTTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 302 GGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGATAACCCCCTTCAT 361
Query 301 CATTTGAATCTTTTTCCTTACTACAACAACTATCTCAAACTAAGCAAGCTTGAGTTCGAT 360
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 362 CATTTGAATCTTTTTCCTTACTACAACAACTACCTCAAACTAAGCAAGCTCGAGTTTGAT 421
Query 361 CTCCTCAAACAGAACCTTAACGGTTCAGTTCCAAAGACTGTTGCTTTCATTGGCTCTGGT 420
|||||| |||||||||| ||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 422 CTCCTCGAACAGAACCTAAACGGTTTTGTTCCAAGGACTGTAGCTTTCATTGGCTCTGGT 481
Query 421 CCTCTCCCTCTTACTTCTGTCGTTCTTGCCTCTTCGCATCTCAAAGACTCAATCTTTCAC 480
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 482 CCTCTCCCTCTTACTTCCGTCGTTCTTGCCTCTTCCCATCTCAAAGACTCGATCTTTCAT 541
Query 481 AACTTTGACATCGACCCATCAGCGAATTTGGTAGCAGCTCGGTTGGTTTCGTCTGATCCT 540
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 542 AACTTTGACATCGACCCATCAGCGAATATGGTAGCAGCTCGTTTGGTTTCGTCTGATCCT 601
Query 541 GATCTTTCACAACGTATGTTCTTCCACACCGTTGATGTAATGGATGTGACTGAGAGCTTA 600
|||||||| ||||||||||| ||||| || |||||| |||||||||| || ||||||||
Sbjct 602 GATCTTTCTCAACGTATGTTTTTCCATACTGTTGATATAATGGATGTAACCGAGAGCTTG 661
Query 601 AAGGGCTTCGACGTTGTGTTCTTGGCTGCTCTTGTCGGAATGGATAAAAAGGAGAAGGTT 660
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 662 AAGGGCTTCGACGTTGTGTTCTTGGCTGCTCTTGTAGGGATGGATAAAAAGGAGAAGGTT 721
Query 661 AAAGTGATCGAGCATCTTGAGAAACACATGTCTCCTGGTGCTTTGCTCATGTTAAGAAGT 720
|| ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 722 AAGGTGGTCGAGCATCTTGAGAAACACATGTCTCCTGGTGCTTTGCTCATGCTGAGAAGC 781
Query 721 GCTCATGGACCTAGAGCGTTTCTCTATCCCATCGTCGAGCCTTGTGATCTCCAAGGTTTC 780
||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 782 GCTCATGGACCTAGAGCTTTTCTCTATCCAATCGTTGAGCCTTGTGATCTCGAAGGTTTC 841
Query 781 CAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTAATCTCAAGG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTAATCTCAAGG 901
Query 841 AAGCTCGGCGGAGAAGATGTTGGTAATGGTGTTGTTCATGATCATATAGATCAAGCTTCG 900
||||| || | | | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 902 AAGCTAGGTG-A-A-GATGCT---AATGGTGTTGTTCATGATCATATAGATCAAGCTTCG 955
Query 901 GATCTCGAGTGTAACTGTTCCAAGATCCACGTGATTATGAACAAGAAGAAGAGCATTATC 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATCTCGCGTGTAACTGTTCCAAGATCCACGTGATTATGAACAAGAAGAAGAGCATTATC 1015
Query 961 GAGGAGTTCGCAGGTGCTAATGAAGAACAACTTACTTAG 999
||||||||||||||||||||||||||||||||||| |||
Sbjct 1016 GAGGAGTTCGCAGGTGCTAATGAAGAACAACTTACCTAG 1054
> AT1G09240.1 | Symbols: NAS3, ATNAS3 | nicotianamine synthase
3 | chr1:2984881-2986130 FORWARD LENGTH=1250
Length=1250
Score = 758 bits (410), Expect = 0.0
Identities = 707/848 (83%), Gaps = 29/848 (3%)
Strand=Plus/Plus
Query 2 AACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGT--AAACAAGATCTG 59
|||||||||||||||||||||| |||||||||||| ||| | || |||| | || ||
Sbjct 53 AACCTCATAGTGTCGACATGGG---TTGCCAAGACGAACAATTGGTGCAAAC-A-ATATG 107
Query 60 CGATCTATACGAAAAGATCTCGAAGCTCGAGACG-CTAAAGCCTTGTGAAGATGTCGACA 118
|||||| |||||||||||||| ||||| |||| | ||||| || | ||||||||| |||
Sbjct 108 CGATCTCTACGAAAAGATCTCAAAGCTTGAGA-GTCTAAAACCATCCGAAGATGTCAACA 166
Query 119 CTCTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCA 178
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 167 TTCTCTTCAAGCAGCTCGTTTCCACATGCATACCACCAAACCCTAACATCGATGTCACCA 226
Query 179 AAATGTCTGAAAACA-TCCAAGAGATGAGATC-AAACCTCATCAAAATTTGTGGAGAAGC 236
| |||| || | | | |||||||||| || | || |||||||| |||||||| |||
Sbjct 227 AGATGTGTG-ACAGAGTCCAAGAGATTCGA-CTTAATCTCATCAAGATTTGTGGTCTAGC 284
Query 237 TGAAGGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGACAACCCACT 296
|||||| ||||||| | || |||||||| ||||| ||||||| |||||||||||||
Sbjct 285 CGAAGGTCACTTAGAAAACCATTTCTCTTCGATCTTGACCTCTTACCAAGACAACCCACT 344
Query 297 TCATCATTTGAATC-TTTTTCCTTACTACAACAACTATCTCAAACTAAGCAAGCTTGAGT 355
||||||||| || | |||| ||||| |||||||||||| | ||||| | ||||| ||||
Sbjct 345 TCATCATTT-AAACATTTTCCCTTATTACAACAACTATTTGAAACTCGGAAAGCTCGAGT 403
Query 356 TCGATCTCCTCAAACAGAACCTTAACGG-TTCAGTTCCAAAGACTGTTGCTTTCATTGGC 414
|||| |||||| |||| ||||| || || || || ||||||| ||| |||||||||||
Sbjct 404 TCGACCTCCTCGAACAAAACCTAAATGGCTT-TGTCCCAAAGAGTGTGGCTTTCATTGGA 462
Query 415 TCTGGTCCTCTCCCTCTTACTTCTGTCGTTCTTGCCTC-TTCGCATCTCAAAGACTCAAT 473
||||||||||| ||||| ||||| |||||||||| || ||| |||||||||||| ||||
Sbjct 463 TCTGGTCCTCTTCCTCTCACTTCCATCGTTCTTGCTTCATTC-CATCTCAAAGACACAAT 521
Query 474 CTTTCACAACTTTGACATCGACCCATCAGCGAATTTGGTAGCAGCTCGGT-TGGTTTCGT 532
||||||||||||||||||||||||||||||||| | | || ||| | ||||||| |
Sbjct 522 CTTTCACAACTTTGACATCGACCCATCAGCGAACTCACTCGCTTCTCT-TCTGGTTTCCT 580
Query 533 CTGATCCTGATCTT-TCACAACGTATGTTCTTCCACACCGTTGATGTAATGGATGTGACT 591
||||||| || | | || ||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 581 CTGATCCAGA-CATCTCTCAACGCATGTTCTTCCACACCGTTGATATAATGGACGTGACA 639
Query 592 GAGAGCTTAAAGGGCTTCGACGTTGTGTT-CTTGGCTGCTCTTGTCGGAATGGATAAAAA 650
|||||||||||| |||| || || ||||| || | |||||||||| |||||| | ||| |
Sbjct 640 GAGAGCTTAAAGAGCTTTGATGTCGTGTTTCTAG-CTGCTCTTGTTGGAATGAACAAAGA 698
Query 651 GGAGAAGGTTAAAGTGATCGAGCATCTTG-AGAAACACATGTCTCCTGGTGCTTTGCTCA 709
|||||| |||||||||||||||||||| | ||||||||||| ||||||||||| ||||||
Sbjct 699 GGAGAAAGTTAAAGTGATCGAGCATCT-GCAGAAACACATGGCTCCTGGTGCTGTGCTCA 757
Query 710 TG-TTAAGAAGTGCTCATGGACCTAGAGCGTTTCTCTATCCCATCGTCGAGCCTTGTGAT 768
|| ||| || |||||||||| || ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 758 TGCTTAGGA-GTGCTCATGGTCCGAGAGCGTTTCTTTATCCGATCGTTGAGCCGTGTGAT 816
Query 769 CTCCAAGGTTTCCAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATT 828
|| || || ||| | ||||| || |||||||||| || ||||| |||||||||||| |
Sbjct 817 CTTCAGGGGTTCGAGGTTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTG 876
Query 829 GTAATCTC 836
|| |||||
Sbjct 877 GTGATCTC 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5