BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474807
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-li... 1107 0.0
> AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21138530-21141571 REVERSE LENGTH=1809
Length=1809
Score = 1107 bits (599), Expect = 0.0
Identities = 690/734 (94%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 809 AGGGGAAAAGCAAAGAAGGTTCCAAGAAAATTCCAGCTATCACGGAAAATCTAGACAGCA 868
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 955 AGGAGAAAAGCAAAGAAGGTTCCATGAAAATTCCAGCTATCACGGAAATTCTAGACAGCA 1014
Query 869 AGAAAGTGACGCCTAG-AGTCCAAAGTTATGAAAAGGAGGTTAAGTCTTCTGACAGAAAT 927
|||||||||||||| | || |||||||||||||||||||| ||| ||||||||||||||
Sbjct 1015 AGAAAGTGACGCCTGGAAG-CCAAAGTTATGAAAAGGAGGCGAAGCCTTCTGACAGAAAT 1073
Query 928 GGTACTCAGCCTTCTAGACAGGGAAACCAGGTTTCTAAAAAGCTGGAACTAAAGCCATCA 987
||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 1074 GGTACTCAGCCTTCTGGACCGGAAAACCAGGTTTCTAAACAGCTGGAACTAAAGCCATCA 1133
Query 988 GTACAAGAGCTTGCTGCCCATGCAGCATCACTTGCGATGTCTGAAGCTTCTAAAAACATT 1047
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1134 GTACAAGAGCTTGCTGCTCATGCAGCGTCACTTGCGATGACTGAAGCTTCTAAAAACATT 1193
Query 1048 AAAGCCCCAAAATCTGCTTACGAATTTGAGAACTCTTGGCGGAGTTTTTCTGGCGACCTT 1107
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1194 AAAACCCCAAAATCTGCTTACGAATTTGAGAACTCTTGGCGGAGTTTTTCCGGCGACAGT 1253
Query 1108 GCTCTACAAACCCAATTGTTGAAGGTCA-TATCTCCGAGCTCTTTACCTCAGATTTTCAA 1166
|| |||| || ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1254 GCCCTACGAAGCCAATTGTTGAAGGTCACGA-CTCCGAGCTCTTTACCTCAGATTTTCAA 1312
Query 1167 GAACGCCATGACTTCTCCGGTGCTGGTTGACATAATAAAATGTGTAGCCTCATTTTTCAC 1226
||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1313 GAACGCCCTGACCTCTCCGGTGCTGGTTGACATAATCAAATGTGTAGCCTCATTCTTCAC 1372
Query 1227 TGAAGACATGGATTTGGCTGTTAAATACATTGAGAACCTAACAAAGGTTCCTAGATTCAA 1286
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGAAGACATGGATTTGGCAGTTAAATACATTGAGAACCTAACAAAGGTTCCTAGATTCAA 1432
Query 1287 CATGCTCGTCATGTGCCTTACCTCAACCGAGAAAAACGAGCTTCTGAAGCTATGGGAAGA 1346
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1433 CATGCTCGTCATGTGCCTTACCTCAACCGAGAAAAACGAGCTACTGAAGATATGGGAAGA 1492
Query 1347 TGTTTTCTGCAATAAAGCAACCCCAATGGAGTATGCAGAGGTCTTAGACAAACTGAGGTC 1406
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1493 TGTTTTCTGCAATAAAGCAACCCCAATGGAGTATGCAGAGGTCTTAGACAAACTAAGGTC 1552
Query 1407 AAGATACTGCCTCAAACAGTAACTTAGGAGATGGCTCTTTTTAGCAGTGTGCATGGTGAA 1466
|||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct 1553 AAGATACTGCCTTAAACAGTAACTTAGTAGATGGCTCTTTTTAGTAGTGTACATGGTGAA 1612
Query 1467 GATTTTGCACACCCAGTAGGCCAGTAAGCATTTCTCAATGATCATGAAACAGTTTTT-GT 1525
||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| ||
Sbjct 1613 GATTTTGCACACCCAGTAGGCCAGTAAGCATTT-TGGATGATAATGAACCAGTTTTTTGT 1671
Query 1526 TCATATATTTACCG 1539
||||||||||||||
Sbjct 1672 TCATATATTTACCG 1685
Score = 1103 bits (597), Expect = 0.0
Identities = 752/825 (91%), Gaps = 18/825 (2%)
Strand=Plus/Plus
Query 1 TCTCTCAGTATGTCTAGGTCACCGAACAAACACGGCCGCGATCAAA--C------T-CAG 51
|||||||| ||| |||||||||||| |||||||||||||||||||| | | |||
Sbjct 81 TCTCTCAGAATGGCTAGGTCACCGAGCAAACACGGCCGCGATCAAACTCAGGATTTCCAG 140
Query 52 GGATTTTTGAATGACTTGCAGGATTGGGAACTTTCATTGAAGGATAAGGACAAGAAAATC 111
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 141 GGATTTTTCAATGACTTGCAGGATTGGGAACTCTCATTGAAGGATAAAGACAAGAAGATT 200
Query 112 AAGCAGCAACGC-GATAATTCATCGAATCCGAGTAGTGAGAATTTCAGACCAAGTGGTTC 170
||||| |||| | | |||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 201 AAGCAACAAC-CTGCTAATTCGTCGAATCCGAGTAGTGAGACGTTCAGACCAAGTGGGTC 259
Query 171 AGGGCAATATGATTTTG-TAAAAAATTATCATTCCGTTAGAGATTTGTCGAGTAGTTTGA 229
|||| ||||||| |||| | ||||| |||| |||| |||| |||||||||||||||||||
Sbjct 260 AGGGAAATATGACTTTGCT-AAAAAGTATCGTTCCATTAGGGATTTGTCGAGTAGTTTGA 318
Query 230 TCGGAGAAAGTCTCTTGGATTCTAATTCAGAGAAGGAGCAGGGAAATGAATTTTTCAAGC 289
| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 319 TTGGAGAAAGTCTATTGGATTCTAGTTCAGAGAAGGAGCAGGGTAATGAATTCTTCAAGC 378
Query 290 AGAAGAAGTTTAATGAGGCGATTGATTGTTACTCTCGAAGCATTGCTTTATCACCAAATG 349
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 379 AGAAGAAGTTCAATGAGGCGATTGATTGTTACTCTCGGAGCATTGCTTTATCGCCAAATG 438
Query 350 CTATTG-CTTATGCAAATCGAGCAATGGCTTATCTTAAGATCAAAAGATATCGAGAAGCG 408
|| || ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 439 CT-GTGACTTATGCAAATCGAGCAATGGCTTACCTTAAAATCAAAAGATATCGAGAGGCT 497
Query 409 GAGGTAGACTGCACAGAAGCCTTAAATCTGGATGATCGTTACATAAAAGCATACTCACGC 468
||||| |||||||||||||| ||||||||||||||||| || |||||||| |||||||||
Sbjct 498 GAGGTTGACTGCACAGAAGCTTTAAATCTGGATGATCGATATATAAAAGCTTACTCACGC 557
Query 469 CGAGCAACAGCCAGAAAAGAACTTGACATGATTAAAGAAGCCAAGGAAGATGCTGAGTTT 528
||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 558 CGAGCAACAGCAAGAAAAGAACTCGGCATGATTAAAGAAGCCAAAGAAGATGCTGAGTTT 617
Query 529 GCTTTAAGATTGGAGCCTGAGAGCCAGGAACTTAAGAAGCAATATGCCGACATCAAATCT 588
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 618 GCCTTAAGATTGGAGCCTGAGAGCCAGGAACTTAAGAAGCAATATGCCGATATCAAATCT 677
Query 589 TTGCTTGAGAAAGAAATCATTGAGAAAGCCACTGGAGCTATGCAAAGCACTGCACAAGAA 648
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 678 TTGCTCGAGAAAGAAATCATTGAGAAAGCCACTGGAGCAATGCAAAGCACTGCACAAGAA 737
Query 649 TTACTCAAAACATCAGGTTTAGATAAGAAAATACAAAAGCCAAATACAGA---GACTTTG 705
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 738 TTACTCAAAACATCAGGTTTAGATAAGAAAATACAAAAGCCAAAGACAGAAATGACTTCA 797
Query 706 AAGCCGGTGACCCTAGGGGCCAAAACGAACAGGGATATGGGTCAGCCTGTTCCAGGTAGC 765
||||| |||||||||| ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 798 AAGCCAGTGACCCTAGTGGCCAAAACGAACAGGGATATTGTTCAGCCTGTTCTAGGTAGC 857
Query 766 AAGGAAAGTTCGGGAAAGAAGCTCATTGAAAATATACAACCTGAG 810
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AATGAAAGTTCGGGAAAGAAGCTCATTGAAAATATACAACCTGAG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5