BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474808
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1 | ... 1528 0.0
> AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1
| chr1:21141883-21144400 FORWARD LENGTH=1042
Length=1042
Score = 1528 bits (827), Expect = 0.0
Identities = 926/973 (95%), Gaps = 9/973 (1%)
Strand=Plus/Plus
Query 20 ATTTTTCGAGAAGATGACGACTCTTACTGTTCCGATTGATAACGGAGATTCTGTGAAGAT 79
|||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 75 ATTTTTCGAGAATATGACGACTTTTTCTGTTCCGATTGATAACGGAGATTCTATGAAGAT 134
Query 80 CGCAGAAGAAGAATCACAAAGAACTCTGTACCCTTATGTAACTGGAACTTCAATTGTTGC 139
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 135 CGCAGAAGAAGAATCACAAAGAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGC 194
Query 140 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCCAC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 195 AATCAAGTACAAAGATGGGGTTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAAC 254
Query 200 CTTAAGATACAAGAACATTGAAAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 259
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTTAAGATACAAGAACATCGAGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGC 314
Query 260 CAGCGGAGAAATCAGTGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 319
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CAGCGGAGAAATCAGCGACTTTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAA 374
Query 320 TGATAACATGTGGGATGATGGTAATTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 379
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 375 TGATAACATGTGGGATGATGGTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGAC 434
Query 380 CCGTGTGATGTACAACCGTCGCAACAAGTTTGACCCTCTGTGGAACACTCTTGTCCTTGG 439
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 435 CCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGG 494
Query 440 AGGCGTCAAAAACGGGAAGAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 499
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGA 554
Query 500 GGACGATCATGTCGCCACCGGATTTGGAAACCACCTCGCTAGGCCAATTCTTCGTGATGA 559
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 555 GGACGATCATGTTGCCACTGGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGA 614
Query 560 GTGGCATGCGGACCTGAGTTTTGAAGACGGTGTCAAGCTCCTTGAGAAATGTATGCGCGT 619
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 615 GTGGCATGCAGACCTGAGTTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGT 674
Query 620 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGA 734
Query 680 AGGTGTGACTGTCTCACAGCCATACTCATTGAAGACATTCTGGGAATTCTCGTCATTCCA 739
|| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 735 GGGCGTGACGGTCTCACAGCCATACTCATTGAAGACATACTGGGAATTCTCGTCATTCCA 794
Query 740 CAACCCAACTGCTGGTGCTGAAGGCTCCTGGTAAGAAGCCAAGCAACCACATAATGTCTG 799
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 795 CAACCCAACTGCTGGTGCTGCAGGCTCCTGGTAAGAAGCCAAGCAACCACATCG-G-CTG 852
Query 800 GAGATCTTTCAAGGAAGCTTTT-TT--ATTTTATGTGATGTTGTTAAAAACTTTGTACTG 856
| ||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 853 GCGATCTTTTAAGGAAGCTTTTATTTTATTTTATGTGATGTTGTTAAACACTTTGTACTG 912
Query 857 TAGTTGGTTTACTATTAAACATGGTGGTTTCTT-CATGACATTCCAGAGTTTAGATCAAT 915
|||||| ||||||||||||| |||||||||||| | ||||| ||||||||||||||||||
Sbjct 913 TAGTTGTTTTACTATTAAACTTGGTGGTTTCTTTC-TGACAGTCCAGAGTTTAGATCAAT 971
Query 916 GAGGATTTATAAAAAGTTCTGGATATCTTTGGTTAGTAATCCATAAACCTTTGTTCATTG 975
||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 972 GAGGATTTATAAAAAGTACTGGATATCTTTGGGTAGTAATCCATA--CCTTTGTTCATTG 1029
Query 976 TTGATCGTTCTCC 988
|||||||||||||
Sbjct 1030 TTGATCGTTCTCC 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5